Non-Coding RNA Search

Ss1.1-Mixn-0003o09.5

Sequence:


               
               TAAGTAGAACAGATTTCTAGGTTGGGTAGGCCACTCCATTCTCTTTTCAATTCCAAATTG
GTCAACAGAATTCGCAAAGTGACTTCAGGAGAAAGCAGCTCTGAGGAATGTGGAAGATCA
TAATTGCTGTTGTGACTGTTGACTGATTATGACCCTCAGAAGGGAGCCTGTTACCTAGAG
AAGCAGGCTGGATGTCCAGCCACCTCCTCCTGTCCACACGAATTCACATACGCTATTCTA
CAAATAAAAGGGAGGGAGATGTTCTCCTAGAAGCCTGTGGACGATGAGGTTCTGAGGCAC
TGTGGAGTTTTTCCCGAGGAGTGAGTGTGACTTAATTATCAGACTGTCTTAGCACAGAAA
GGTGGAAAAAGAAATTCCAGGCCTCTGTTCTATCAGAGCAAAACGGATGTCTCTGCAGTG
TTTGATACCACATACCACACGTCTGCAGGAAGCATCTCCCAGGAGAAGCTCTCCAGTCAA
TCACCCAAAAAGGGAGAGGTATGGCCTGGAAATTATGTATGATAAGAAAATGACTGGAGA
GTGAGGAAGACATTAACACAATATGATACAAATAAGTGTAGCCTTGATTTCAGCAGACTT
AATGGAAGCTACATGAAATTCAGAAAGAACCCATTTCTCAGAAAGTTAATCCTGCGAACT
CCCTTTTGGGAGGGGAAAAGGGCCATCTGTAAGGGCAGCCTGTCCAGGTGAAATTGTGTT
TAGTCACTGCTATTTGAGGGGGGGGTCACAGCCACCCAGAGAGCGTCACCAGGAGAAGGG
TAAAAGCAACTGCCACACAGCAAGGTCCCAGCTTTGAGGGCATCAAGATGTCAGCTCAGG
GTTACATAGTTTGATCTTAAGAAGAGGCTTTTCAGACGTAGCCTTTGCTTTCTGCTGAGA
TAGGGAATGCGTCCCTCTGCCGGAGTACGACTTTTTACGATGATGAAATAAAGCTGTATA
TGTCTCATTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGTAGAACAGATTTCTAGGTTGGGTAGGCCACTCCATTCTCTTTTCAATTCCAAATTG
GTCAACAGAATTCGCAAAGTGACTTCAGGAGAAAGCAGCTCTGAGGAATGTGGAAGATCA
TAATTGCTGTTGTGACTGTTGACTGATTATGACCCTCAGAAGGGAGCCTGTTACCTAGAG
AAGCAGGCTGGATGTCCAGCCACCTCCTCCTGTCCACACGAATTCACATACGCTATTCTA
CAAATAAAAGGGAGGGAGATGTTCTCCTAGAAGCCTGTGGACGATGAGGTTCTGAGGCAC
TGTGGAGTTTTTCCCGAGGAGTGAGTGTGACTTAATTATCAGACTGTCTTAGCACAGAAA
GGTGGAAAAAGAAATTCCAGGCCTCTGTTCTATCAGAGCAAAACGGATGTCTCTGCAGTG
TTTGATACCACATACCACACGTCTGCAGGAAGCATCTCCCAGGAGAAGCTCTCCAGTCAA
TCACCCAAAAAGGGAGAGGTATGGCCTGGAAATTATGTATGATAAGAAAATGACTGGAGA
GTGAGGAAGACATTAACACAATATGATACAAATAAGTGTAGCCTTGATTTCAGCAGACTT
AATGGAAGCTACATGAAATTCAGAAAGAACCCATTTCTCAGAAAGTTAATCCTGCGAACT
CCCTTTTGGGAGGGGAAAAGGGCCATCTGTAAGGGCAGCCTGTCCAGGTGAAATTGTGTT
TAGTCACTGCTATTTGAGGGGGGGGTCACAGCCACCCAGAGAGCGTCACCAGGAGAAGGG
TAAAAGCAACTGCCACACAGCAAGGTCCCAGCTTTGAGGGCATCAAGATGTCAGCTCAGG
GTTACATAGTTTGATCTTAAGAAGAGGCTTTTCAGACGTAGCCTTTGCTTTCTGCTGAGA
TAGGGAATGCGTCCCTCTGCCGGAGTACGACTTTTTACGATGATGAAATAAAGCTGTATA
TGTCTCATTGTT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               505-972, gnl|bosTau2|chr10 (46676481-46676020)
               

               
               505-972, gnl|hg17|chr14 (56520712-56521036)
               

               
               505-972, gnl|panTro1|chr15 (55971306-55971630)
               

               
               505-972, gnl|rheMac2|chr7 (120009359-120009675)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               505-972, gnl|bosTau2|chr10 (46676481-46676020)
               

               
               505-972, gnl|hg17|chr14 (56520712-56521036)
               

               
               505-972, gnl|panTro1|chr15 (55971306-55971630)
               

               
               505-972, gnl|rheMac2|chr7 (120009359-120009675)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               cbe (1.19617)
               

               
               sto (0.539471)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.19617)
               

               
               sto (0.539471)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	505-972, gnl\|bosTau2\|chr10 (46676481-46676020)
	505-972, gnl\|hg17\|chr14 (56520712-56521036)
	505-972, gnl\|panTro1\|chr15 (55971306-55971630)
	505-972, gnl\|rheMac2\|chr7 (120009359-120009675)

	cbe (1.19617)
	sto (0.539471)
	pro (0.512033)
	aor (0.390549)
	cmu (0.372787)
	sin (0.349895)
	spc (0.340097)
	fco (0.314416)
	cte (0.29274)
	spl (0.286369)
	sug (0.254582)
	thg (0.253582)
	bla (0.248694)
	mgp (0.230681)
	fcc (0.197785)
	fbs (0.175346)
	rec (0.17307)
	fhi (0.169578)
	cje (0.165235)
	pty (0.142714)
	ret (0.128733)
	pgl (0.118483)
	ebs (0.118301)
	jej (0.0989218)