Non-Coding RNA Search

Ss1.1-Mixn-0003o22.5

Sequence:


               
               AGAGCTAGAAGACCAGCGAGGCGCGGTGGCATCCGACTGGCTCGCGAGGTCCGAGGCGGG
CCGGGGTCCAGGACCGGGTGGGATCCGAGAGGGGCGCGGGGCCAGAGGACGGCCTTCGCC
CGGGAACCGCCGGGAAGAAGAAGCCGCACCGGTAGCGGCCTCGCATGTGGGAACCGCACC
TCCAAGGCCGTCCTTGAAGACCCGGACAGTGGGTTCAGGCAGCCGTGCGCGGGCGAGGGT
AGCCCAACCTGGCTCGCGAGAAAGTGACAAGACACCCCTCTGCTGAGTGGATCTTCTTTC
TACAGCCAGGAGCCAATGGCCAGAGACAAAGACAAACCCTGTGAGCTGGACCAAGAGAAA
TACAATGCTGATGACAATGTGAAAATCATCTGCCTGGGGGACAGCGCTGTGGGCAAGTCC
AAACTCATGGAGAGATTTCTCATGGACGGATTTCAGCCGCAGCAGCTGTCCACGTATGCC
CTCACCCTGTACAAGCACAGGGCCACAGTCGACGGCAAGACCGTCCTCGTGGACTTTTGG
GACACAGCAGGCCAGGAGCGGTTCCAAAGCATGCACGCCTCCTACTACCACAAGGCCCAC
GCCTGCATCATGGTGTTTGATGTGCAGAGGAAAATCACCTACAAGAACCTGGGCACCTGG
TATACAGAGCTTCGGACGTTCAGGCCAGAGATTCCGTGCATCGTGGTGGCTAATAAAATC
GATGCAGACATAAAGATGACCCAAAAAAGCTTCAATTTTGCCAGAAAGTTCTCCCTGCCC
CTGTACTTTGTCTCAGCTGCTGATGGTACGAACGTCGTGAAGCTCTTCAATGATGCGATT
CGATTAGCTGTGTCTTACAAACAGAACTCCCGGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCTAGAAGACCAGCGAGGCGCGGTGGCATCCGACTGGCTCGCGAGGTCCGAGGCGGG
CCGGGGTCCAGGACCGGGTGGGATCCGAGAGGGGCGCGGGGCCAGAGGACGGCCTTCGCC
CGGGAACCGCCGGGAAGAAGAAGCCGCACCGGTAGCGGCCTCGCATGTGGGAACCGCACC
TCCAAGGCCGTCCTTGAAGACCCGGACAGTGGGTTCAGGCAGCCGTGCGCGGGCGAGGGT
AGCCCAACCTGGCTCGCGAGAAAGTGACAAGACACCCCTCTGCTGAGTGGATCTTCTTTC
TACAGCCAGGAGCCAATGGCCAGAGACAAAGACAAACCCTGTGAGCTGGACCAAGAGAAA
TACAATGCTGATGACAATGTGAAAATCATCTGCCTGGGGGACAGCGCTGTGGGCAAGTCC
AAACTCATGGAGAGATTTCTCATGGACGGATTTCAGCCGCAGCAGCTGTCCACGTATGCC
CTCACCCTGTACAAGCACAGGGCCACAGTCGACGGCAAGACCGTCCTCGTGGACTTTTGG
GACACAGCAGGCCAGGAGCGGTTCCAAAGCATGCACGCCTCCTACTACCACAAGGCCCAC
GCCTGCATCATGGTGTTTGATGTGCAGAGGAAAATCACCTACAAGAACCTGGGCACCTGG
TATACAGAGCTTCGGACGTTCAGGCCAGAGATTCCGTGCATCGTGGTGGCTAATAAAATC
GATGCAGACATAAAGATGACCCAAAAAAGCTTCAATTTTGCCAGAAAGTTCTCCCTGCCC
CTGTACTTTGTCTCAGCTGCTGATGGTACGAACGTCGTGAAGCTCTTCAATGATGCGATT
CGATTAGCTGTGTCTTACAAACAGAACTCCCGGGAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|18088510|gb|AAH20495.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18088510|gb|AAH20495.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               263-422, gnl|bosTau2|chr5 (75554972-75554813)
               

               
               263-422, gnl|Hg17|chr22 (49510921-49510760)
               

               
               263-422, gnl|Mm7|chr15 (89673306-89673151)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               263-422, gnl|bosTau2|chr5 (75554972-75554813)
               

               
               263-422, gnl|Hg17|chr22 (49510921-49510760)
               

               
               263-422, gnl|Mm7|chr15 (89673306-89673151)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	263-422, gnl\|bosTau2\|chr5 (75554972-75554813)
	263-422, gnl\|Hg17\|chr22 (49510921-49510760)
	263-422, gnl\|Mm7\|chr15 (89673306-89673151)