Ss1.1-Mixn-0004a08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCACTCCAGAGCGCGGGCGTCCAAGTAGGGGTGTGTGGCAGGGGTTTCCGGGCCGGGCA CCAGCACCCCAGCCCCTTCCATCAGGGGTTTGGCTTAGGGTCGTCCCTGGCGGGCGGCTC TCGAAGCTTGAAGAACAGCGCGCGCACCCGGGCCGCTCCGGGACTGCAGAGGTCCGCTAG GCAGGCACGAAGATGGCGGCAGCGTCGGTCTCTGAGACTTCGGCTTCTCAATTCTCGAAC ATCTTAGCAGAACCATCAAAGTCTAGTGGAAGTATGGTTCGCCATTCCTCATCTCCATAT GTAGTATATCCACCCGATAAGCCTTTCCTTAACAGTGATCTACGACGCTCCCCAAATAAG CCTACATTTGCCTATCCGGAAAGCAACAGCAGAGCTATATTTTCTGCTTTGAAGAATCTT CAAGATAAAATTCGACGTTTAGAACTTGAGAGGATTCAGGCAGAAGAAAGTGTGAAAACC TTGTCTAAAGAAACAATTGAATATAAGAAAGTACTGGATGAACAAATACAAGAAAGGGAG AATTCAAAGAATGAGGAATCGAAGCACAATCAAGAACTGACATCTCAGTTGTTAGCTGCA GAAAATAAATGTAATCTTTTAGAAAAACAATTGGAATACATGCGTAATATGATAAAGCAT GCAGAAATGGAGAGGACGTCTGTATTAGAGAAACAGGTTTCCCTAGAAAGAGAACGGCAA CATGATCAAACACATGTTCAAAACCAGCTTGAAAAATTGGATCTTCTTGAACAGGAGTAT AACAAGCTTACCACAATGCAAGCCCTTGCAGAAAAAAAAATGCAAGAGTTAGAAGCCAAA CTCCGCGAAGAAGAACAGGAAAGGAAACGTATGCAAGCGAAGGCAGCCCAGTTGCAGACT GGCCTAGAAACAAATAGACTTATCTTTGAAGATAAGGCAACTTCATGTGTCCCCCGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCACTCCAGAGCGCGGGCGTCCAAGTAGGGGTGTGTGGCAGGGGTTTCCGGGCCGGGCA CCAGCACCCCAGCCCCTTCCATCAGGGGTTTGGCTTAGGGTCGTCCCTGGCGGGCGGCTC TCGAAGCTTGAAGAACAGCGCGCGCACCCGGGCCGCTCCGGGACTGCAGAGGTCCGCTAG GCAGGCACGAAGATGGCGGCAGCGTCGGTCTCTGAGACTTCGGCTTCTCAATTCTCGAAC ATCTTAGCAGAACCATCAAAGTCTAGTGGAAGTATGGTTCGCCATTCCTCATCTCCATAT GTAGTATATCCACCCGATAAGCCTTTCCTTAACAGTGATCTACGACGCTCCCCAAATAAG CCTACATTTGCCTATCCGGAAAGCAACAGCAGAGCTATATTTTCTGCTTTGAAGAATCTT CAAGATAAAATTCGACGTTTAGAACTTGAGAGGATTCAGGCAGAAGAAAGTGTGAAAACC TTGTCTAAAGAAACAATTGAATATAAGAAAGTACTGGATGAACAAATACAAGAAAGGGAG AATTCAAAGAATGAGGAATCGAAGCACAATCAAGAACTGACATCTCAGTTGTTAGCTGCA GAAAATAAATGTAATCTTTTAGAAAAACAATTGGAATACATGCGTAATATGATAAAGCAT GCAGAAATGGAGAGGACGTCTGTATTAGAGAAACAGGTTTCCCTAGAAAGAGAACGGCAA CATGATCAAACACATGTTCAAAACCAGCTTGAAAAATTGGATCTTCTTGAACAGGAGTAT AACAAGCTTACCACAATGCAAGCCCTTGCAGAAAAAAAAATGCAAGAGTTAGAAGCCAAA CTCCGCGAAGAAGAACAGGAAAGGAAACGTATGCAAGCGAAGGCAGCCCAGTTGCAGACT GGCCTAGAAACAAATAGACTTATCTTTGAAGATAAGGCAACTTCATGTGTCCCCCGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 393-551, + strand, RNAz p=0.599594 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 393-551, + strand, RNAz p=0.599594 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-237, gnl|bosTau2|chr15 (3662688-3662452) | |
| 1-237, gnl|canFam2|chr21 (8360701-8359390) | |
| 1-237, gnl|echTel1|scaffold_284834 (184210-182881) | |
| 1-237, gnl|hg17|chr11 (95162582-95163923) | |
| 1-237, gnl|Hg17|chr11 (95163319-95163555) | |
| 1-237, gnl|loxAfr1|scaffold_113796 (6033-4678) | |
| 1-237, gnl|mm7|chr9 (13664933-13663724) | |
| 1-237, gnl|Mm7|chr9 (13664242-13664030) | |
| 1-237, gnl|monDom2|scaffold_15 (1442368-1441032) | |
| 1-237, gnl|oryCun1|scaffold_130564 (10052-11337) | |
| 1-237, gnl|panTro1|chr9 (97075009-97076349) | |
| 1-237, gnl|rheMac2|chr14 (94347641-94348986) | |
| 1-237, gnl|rn3|chr8 (10628631-10627412) | |
| 393-574, gnl|bosTau2|chr15 (3635772-3635591) | |
| 393-574, gnl|canFam2|chr21 (8337917-8338096) | |
| 393-574, gnl|canFam2|chr36 (8583159-8583308) | |
| 393-574, gnl|dasNov1|scaffold_6806 (3626-3447) | |
| 393-574, gnl|dasNov1|scaffold_6806 (3618-3447) | |
| 393-574, gnl|echTel1|scaffold_227702 (11916-11759) | |
| 393-574, gnl|echTel1|scaffold_278625 (82495-82316) | |
| 393-574, gnl|hg17|chr1 (170064165-170064344) | |
| 393-574, gnl|Hg17|chr11 (95185742-95185923) | |
| 393-574, gnl|hg17|chr2 (160495983-160496126) | |
| 393-574, gnl|loxAfr1|scaffold_166868 (459-309) | |
| 393-574, gnl|loxAfr1|scaffold_29485 (13579-13758) | |
| 393-574, gnl|mm7|chr9 (13656034-13656213) | |
| 393-574, gnl|mm7|chr9 (13656044-13656213) | |
| 393-574, gnl|Mm7|chr9 (13656214-13656033) | |
| 393-574, gnl|monDom2|scaffold_15 (1401926-1402105) | |
| 393-574, gnl|panTro1|chr1 (152425724-152425903) | |
| 393-574, gnl|panTro1|chr13 (49873979-49874122) | |
| 393-574, gnl|rheMac2|chr1 (203022568-203022747) | |
| 393-574, gnl|rheMac2|chr12 (23363545-23363688) | |
| 393-574, gnl|rn3|chr8 (10620182-10620361) | |
| 393-574, gnl|rn3|chr8 (10620190-10620361) | |
| 694-813, gnl|bosTau2|chr15 (3633140-3633021) | |
| 694-813, gnl|canFam2|chr21 (8335849-8335963) | |
| 694-813, gnl|canFam2|chr21 (8335978-8335826) | |
| 694-813, gnl|danRer3|chr20 (28531276-28531120) | |
| 694-813, gnl|dasNov1|scaffold_6806 (6810-6696) | |
| 694-813, gnl|dasNov1|scaffold_6806 (6681-6832) | |
| 694-813, gnl|echTel1|scaffold_278625 (82734-82620) | |
| 694-813, gnl|echTel1|scaffold_285022 (3621-3774) | |
| 694-813, gnl|galGal2|chr1 (177050623-177050482) | |
| 694-813, gnl|hg17|chr1 (170063930-170064040) | |
| 694-813, gnl|hg17|chr11 (95190587-95190739) | |
| 694-813, gnl|Hg17|chr11 (95190596-95190715) | |
| 694-813, gnl|loxAfr1|scaffold_29485 (10217-10331) | |
| 694-813, gnl|loxAfr1|scaffold_29485 (10346-10194) | |
| 694-813, gnl|mm7|chr9 (13654062-13654176) | |
| 694-813, gnl|mm7|chr9 (13654191-13654036) | |
| 694-813, gnl|Mm7|chr9 (13654180-13654061) | |
| 694-813, gnl|monDom2|scaffold_15 (1392992-1393106) | |
| 694-813, gnl|monDom2|scaffold_15 (1393121-1392970) | |
| 694-813, gnl|oryCun1|scaffold_117741 (2784-2670) | |
| 694-813, gnl|oryCun1|scaffold_117741 (2656-2807) | |
| 694-813, gnl|panTro1|chr1 (152425489-152425599) | |
| 694-813, gnl|panTro1|chr9 (97104200-97104352) | |
| 694-813, gnl|rheMac2|chr1 (203022329-203022443) | |
| 694-813, gnl|rheMac2|chr14 (94375938-94376090) | |
| 694-813, gnl|rn3|chr8 (10618214-10618328) | |
| 694-813, gnl|rn3|chr8 (10618343-10618192) | |
| 694-813, gnl|xenTro1|scaffold_123 (2173785-2173940) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-237, gnl|bosTau2|chr15 (3662688-3662452) | |
| 1-237, gnl|canFam2|chr21 (8360701-8359390) | |
| 1-237, gnl|echTel1|scaffold_284834 (184210-182881) | |
| 1-237, gnl|hg17|chr11 (95162582-95163923) | |
| 1-237, gnl|Hg17|chr11 (95163319-95163555) | |
| 1-237, gnl|loxAfr1|scaffold_113796 (6033-4678) | |
| 1-237, gnl|mm7|chr9 (13664933-13663724) | |
| 1-237, gnl|Mm7|chr9 (13664242-13664030) | |
| 1-237, gnl|monDom2|scaffold_15 (1442368-1441032) | |
| 1-237, gnl|oryCun1|scaffold_130564 (10052-11337) | |
| 1-237, gnl|panTro1|chr9 (97075009-97076349) | |
| 1-237, gnl|rheMac2|chr14 (94347641-94348986) | |
| 1-237, gnl|rn3|chr8 (10628631-10627412) | |
| 393-574, gnl|bosTau2|chr15 (3635772-3635591) | |
| 393-574, gnl|canFam2|chr21 (8337917-8338096) | |
| 393-574, gnl|canFam2|chr36 (8583159-8583308) | |
| 393-574, gnl|dasNov1|scaffold_6806 (3626-3447) | |
| 393-574, gnl|dasNov1|scaffold_6806 (3618-3447) | |
| 393-574, gnl|echTel1|scaffold_227702 (11916-11759) | |
| 393-574, gnl|echTel1|scaffold_278625 (82495-82316) | |
| 393-574, gnl|hg17|chr1 (170064165-170064344) | |
| 393-574, gnl|Hg17|chr11 (95185742-95185923) | |
| 393-574, gnl|hg17|chr2 (160495983-160496126) | |
| 393-574, gnl|loxAfr1|scaffold_166868 (459-309) | |
| 393-574, gnl|loxAfr1|scaffold_29485 (13579-13758) | |
| 393-574, gnl|mm7|chr9 (13656034-13656213) | |
| 393-574, gnl|mm7|chr9 (13656044-13656213) | |
| 393-574, gnl|Mm7|chr9 (13656214-13656033) | |
| 393-574, gnl|monDom2|scaffold_15 (1401926-1402105) | |
| 393-574, gnl|panTro1|chr1 (152425724-152425903) | |
| 393-574, gnl|panTro1|chr13 (49873979-49874122) | |
| 393-574, gnl|rheMac2|chr1 (203022568-203022747) | |
| 393-574, gnl|rheMac2|chr12 (23363545-23363688) | |
| 393-574, gnl|rn3|chr8 (10620182-10620361) | |
| 393-574, gnl|rn3|chr8 (10620190-10620361) | |
| 694-813, gnl|bosTau2|chr15 (3633140-3633021) | |
| 694-813, gnl|canFam2|chr21 (8335849-8335963) | |
| 694-813, gnl|canFam2|chr21 (8335978-8335826) | |
| 694-813, gnl|danRer3|chr20 (28531276-28531120) | |
| 694-813, gnl|dasNov1|scaffold_6806 (6810-6696) | |
| 694-813, gnl|dasNov1|scaffold_6806 (6681-6832) | |
| 694-813, gnl|echTel1|scaffold_278625 (82734-82620) | |
| 694-813, gnl|echTel1|scaffold_285022 (3621-3774) | |
| 694-813, gnl|galGal2|chr1 (177050623-177050482) | |
| 694-813, gnl|hg17|chr1 (170063930-170064040) | |
| 694-813, gnl|hg17|chr11 (95190587-95190739) | |
| 694-813, gnl|Hg17|chr11 (95190596-95190715) | |
| 694-813, gnl|loxAfr1|scaffold_29485 (10217-10331) | |
| 694-813, gnl|loxAfr1|scaffold_29485 (10346-10194) | |
| 694-813, gnl|mm7|chr9 (13654062-13654176) | |
| 694-813, gnl|mm7|chr9 (13654191-13654036) | |
| 694-813, gnl|Mm7|chr9 (13654180-13654061) | |
| 694-813, gnl|monDom2|scaffold_15 (1392992-1393106) | |
| 694-813, gnl|monDom2|scaffold_15 (1393121-1392970) | |
| 694-813, gnl|oryCun1|scaffold_117741 (2784-2670) | |
| 694-813, gnl|oryCun1|scaffold_117741 (2656-2807) | |
| 694-813, gnl|panTro1|chr1 (152425489-152425599) | |
| 694-813, gnl|panTro1|chr9 (97104200-97104352) | |
| 694-813, gnl|rheMac2|chr1 (203022329-203022443) | |
| 694-813, gnl|rheMac2|chr14 (94375938-94376090) | |
| 694-813, gnl|rn3|chr8 (10618214-10618328) | |
| 694-813, gnl|rn3|chr8 (10618343-10618192) | |
| 694-813, gnl|xenTro1|scaffold_123 (2173785-2173940) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tes (0.207814) | |
| fcc (0.197785) | |
| pty (0.142714) | |
| cst (0.140036) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| fcc (0.197785) | |
| pty (0.142714) | |
| cst (0.140036) |