Ss1.1-Mixn-0004a23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGGGTCGTGGCTGCGGCCGCCGAGTCCGTGCACGCAGCAGGCTGCTTCTCCTTGCTGGG GTGTCAGCGCTGAGAGGCGGCGACCGGCGGGATGGAGAAGAGTAGGATGAACCTGCCCAA GGGGCCGGACACACTCTGCTTCGACAAGGACGAGTTCATGAAGGAAGATTTTGACGTCGA TCACTTTGTGTCCGACTGTCGGAAGCGTGTCCAGCTGGAGGAGCTGAGGGATGACCTGGA GCTGTACTATAAACTGCTGAAAACGGCCATGGTCGAGCTCATCAACAAGGACTATGCGGA TTTTGTCAACCTCTCAACAAACCTGGTTGGCATGGACAAAGCCCTCAACCAGCTTTCTGT GCCTTTGGGACAGTTACGAGAAGAAGTTCTGAGTCTCAGGTCATCCTTGAGTGAAGGAAT TCGGGCAGTTGATGAACGAATGTCTAAACAAGAGGACATTAGGAAGAAAAAGATGTGTGT GTTGAGGCTTATACAGGTTATTCGATCAGTTGAGAAAATTGAAAAAATCTTAAATTCTCA AAATTCTAAAGAAACATCTGCACTAGAAGGAAGCAGCTCACTTTTGACTGGACAAATTTT GGAGAGAATTGCCACAGAATTTAACCAGTTACAGTTTCATGCTGTTCAAAGCAAAGGCAT GCCTCTTTTGGACAAAATAAGACACGTATAGCTGGCATCACGGCCATGCTGCAGCAGTCC CTGGAAGGCCTCTTGTTAGAAGGGCTTCGGACCTCCAACGTGGATATAATCCGGCACTGC TTGCGGACTTATGCCACGATTGACAAGACACGGGATGCTGAGGCGCTGGTTGGTCAAGTC CTGGTGAAACCATACATGGATGATGGTGATTACAGAGCAGATTGTTGATACGAATCTGAG TGGCCTCCAGCTCATGTATCATAAGCTCTTGGAGTTTGTGCCCCACCACTGCCGCCTTCT TCGAGAGGTCACGGGAGGAGCCATCTCAAGTGAAAAAGGCAATACTGTTCCTGGATATGA TTTTTTGGTGAATTCTGTCTGGCCAGAAATAGTACGAGGATTAGAAGAAAAATTGCCCTC ACTTTTTAATCCTGGGAATCCTGATACATTTCACCAGAAATATACCATAAGTATGGATTT TGTAAGAAACTTTGAGCGGCAATGTGGATCACAGGCCAGTGTAAAAAGATTAAGAGCACA TCCTGCCTATCACAGCTTCAATAATAAGTGGAACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGGGTCGTGGCTGCGGCCGCCGAGTCCGTGCACGCAGCAGGCTGCTTCTCCTTGCTGGG GTGTCAGCGCTGAGAGGCGGCGACCGGCGGGATGGAGAAGAGTAGGATGAACCTGCCCAA GGGGCCGGACACACTCTGCTTCGACAAGGACGAGTTCATGAAGGAAGATTTTGACGTCGA TCACTTTGTGTCCGACTGTCGGAAGCGTGTCCAGCTGGAGGAGCTGAGGGATGACCTGGA GCTGTACTATAAACTGCTGAAAACGGCCATGGTCGAGCTCATCAACAAGGACTATGCGGA TTTTGTCAACCTCTCAACAAACCTGGTTGGCATGGACAAAGCCCTCAACCAGCTTTCTGT GCCTTTGGGACAGTTACGAGAAGAAGTTCTGAGTCTCAGGTCATCCTTGAGTGAAGGAAT TCGGGCAGTTGATGAACGAATGTCTAAACAAGAGGACATTAGGAAGAAAAAGATGTGTGT GTTGAGGCTTATACAGGTTATTCGATCAGTTGAGAAAATTGAAAAAATCTTAAATTCTCA AAATTCTAAAGAAACATCTGCACTAGAAGGAAGCAGCTCACTTTTGACTGGACAAATTTT GGAGAGAATTGCCACAGAATTTAACCAGTTACAGTTTCATGCTGTTCAAAGCAAAGGCAT GCCTCTTTTGGACAAAATAAGACACGTATAGCTGGCATCACGGCCATGCTGCAGCAGTCC CTGGAAGGCCTCTTGTTAGAAGGGCTTCGGACCTCCAACGTGGATATAATCCGGCACTGC TTGCGGACTTATGCCACGATTGACAAGACACGGGATGCTGAGGCGCTGGTTGGTCAAGTC CTGGTGAAACCATACATGGATGATGGTGATTACAGAGCAGATTGTTGATACGAATCTGAG TGGCCTCCAGCTCATGTATCATAAGCTCTTGGAGTTTGTGCCCCACCACTGCCGCCTTCT TCGAGAGGTCACGGGAGGAGCCATCTCAAGTGAAAAAGGCAATACTGTTCCTGGATATGA TTTTTTGGTGAATTCTGTCTGGCCAGAAATAGTACGAGGATTAGAAGAAAAATTGCCCTC ACTTTTTAATCCTGGGAATCCTGATACATTTCACCAGAAATATACCATAAGTATGGATTT TGTAAGAAACTTTGAGCGGCAATGTGGATCACAGGCCAGTGTAAAAAGATTAAGAGCACA TCCTGCCTATCACAGCTTCAATAATAAGTGGAACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 685-803, + strand, RNAz p=0.58905 | |
| 685-791, + strand, RNAz p=0.576839 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 685-803, + strand, RNAz p=0.58905 | |
| 685-791, + strand, RNAz p=0.576839 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 162-327, gnl|bosTau2|chr28 (34836737-34836572) | |
| 162-327, gnl|canFam2|chr4 (11735429-11735220) | |
| 162-327, gnl|danRer3|chr13 (28643921-28644135) | |
| 162-327, gnl|dasNov1|scaffold_22709 (5823-6032) | |
| 162-327, gnl|echTel1|scaffold_304888 (886-1092) | |
| 162-327, gnl|fr1|chrUn (135860848-135860661) | |
| 162-327, gnl|galGal2|chr3 (36592385-36592578) | |
| 162-327, gnl|hg17|chr1 (227101904-227102113) | |
| 162-327, gnl|Hg17|chr1 (227101943-227102108) | |
| 162-327, gnl|loxAfr1|scaffold_4961 (43893-43685) | |
| 162-327, gnl|mm7|chr8 (123112774-123112970) | |
| 162-327, gnl|Mm7|chr8 (123112800-123112965) | |
| 162-327, gnl|monDom2|scaffold_13 (59006195-59006404) | |
| 162-327, gnl|oryCun1|scaffold_198292 (254682-254473) | |
| 162-327, gnl|panTro1|chr1 (210949873-210950082) | |
| 162-327, gnl|rheMac2|chr1 (226308085-226307876) | |
| 162-327, gnl|rn3|chr19 (54712785-54712981) | |
| 162-327, gnl|tetNig1|chrUn_random (10034072-10034260) | |
| 162-327, gnl|xenTro1|scaffold_124 (1236386-1236169) | |
| 471-600, gnl|bosTau2|chr28 (34829666-34829536) | |
| 471-600, gnl|Hg17|chr1 (227106963-227107091) | |
| 471-600, gnl|Mm7|chr8 (123117067-123117188) | |
| 685-863, gnl|bosTau2|chr28 (34826905-34826727) | |
| 685-863, gnl|canFam2|chr4 (11725585-11725389) | |
| 685-863, gnl|danRer3|chr13 (28646440-28646633) | |
| 685-863, gnl|dasNov1|scaffold_100823 (4014-3818) | |
| 685-863, gnl|echTel1|scaffold_171592 (1242-1046) | |
| 685-863, gnl|fr1|chrUn (135859417-135859234) | |
| 685-863, gnl|galGal2|chr3 (36599339-36599535) | |
| 685-863, gnl|hg17|chr1 (227111830-227112026) | |
| 685-863, gnl|Hg17|chr1 (227111837-227112015) | |
| 685-863, gnl|loxAfr1|scaffold_4961 (33090-32894) | |
| 685-863, gnl|mm7|chr8 (123120378-123120574) | |
| 685-863, gnl|Mm7|chr8 (123120385-123120563) | |
| 685-863, gnl|monDom2|scaffold_13 (59037571-59037767) | |
| 685-863, gnl|oryCun1|scaffold_198292 (241652-241456) | |
| 685-863, gnl|panTro1|chr1 (210959562-210959758) | |
| 685-863, gnl|rheMac2|chr1 (226298331-226298135) | |
| 685-863, gnl|rn3|chr19 (54720958-54721154) | |
| 685-863, gnl|tetNig1|chrUn_random (10035373-10035562) | |
| 685-863, gnl|xenTro1|scaffold_124 (1229139-1228946) | |
| 865-990, gnl|bosTau2|chr28 (34825088-34824963) | |
| 865-990, gnl|canFam2|chr4 (11723722-11723565) | |
| 865-990, gnl|danRer3|chr13 (28650107-28650266) | |
| 865-990, gnl|fr1|chrUn (135859170-135859025) | |
| 865-990, gnl|galGal2|chr3 (36601384-36601547) | |
| 865-990, gnl|hg17|chr1 (227113968-227114127) | |
| 865-990, gnl|Hg17|chr1 (227113996-227114121) | |
| 865-990, gnl|loxAfr1|scaffold_34241 (3423-3266) | |
| 865-990, gnl|mm7|chr8 (123122437-123122700) | |
| 865-990, gnl|Mm7|chr8 (123122569-123122694) | |
| 865-990, gnl|monDom2|scaffold_13 (59049005-59049159) | |
| 865-990, gnl|panTro1|chr1 (210961716-210961875) | |
| 865-990, gnl|rheMac2|chr1 (226296160-226296001) | |
| 865-990, gnl|rn3|chr19 (54722897-54723053) | |
| 865-990, gnl|tetNig1|chrUn_random (10035633-10035762) | |
| 865-990, gnl|xenTro1|scaffold_124 (1228370-1228216) | |
| 1116-1236, gnl|bosTau2|chr28 (34818960-34818840) | |
| 1116-1236, gnl|canFam2|chr4 (11717091-11716901) | |
| 1116-1236, gnl|danRer3|chr13 (28650606-28650784) | |
| 1116-1236, gnl|dasNov1|scaffold_116932 (622-822) | |
| 1116-1236, gnl|echTel1|scaffold_41288 (3977-3792) | |
| 1116-1236, gnl|fr1|chrUn (135858777-135858598) | |
| 1116-1236, gnl|galGal2|chr3 (36606297-36606485) | |
| 1116-1236, gnl|hg17|chr1 (227121362-227121549) | |
| 1116-1236, gnl|Hg17|chr1 (227121392-227121512) | |
| 1116-1236, gnl|loxAfr1|scaffold_4961 (19358-19174) | |
| 1116-1236, gnl|mm7|chr8 (123128110-123128299) | |
| 1116-1236, gnl|Mm7|chr8 (123128142-123128262) | |
| 1116-1236, gnl|monDom2|scaffold_13 (59054787-59054962) | |
| 1116-1236, gnl|oryCun1|scaffold_198292 (231879-231697) | |
| 1116-1236, gnl|panTro1|chr1 (210969220-210969408) | |
| 1116-1236, gnl|rheMac2|chr1 (226288757-226288569) | |
| 1116-1236, gnl|rn3|chr19 (54728889-54729078) | |
| 1116-1236, gnl|xenTro1|scaffold_124 (1226003-1225825) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-327, gnl|bosTau2|chr28 (34836737-34836572) | |
| 162-327, gnl|canFam2|chr4 (11735429-11735220) | |
| 162-327, gnl|danRer3|chr13 (28643921-28644135) | |
| 162-327, gnl|dasNov1|scaffold_22709 (5823-6032) | |
| 162-327, gnl|echTel1|scaffold_304888 (886-1092) | |
| 162-327, gnl|fr1|chrUn (135860848-135860661) | |
| 162-327, gnl|galGal2|chr3 (36592385-36592578) | |
| 162-327, gnl|hg17|chr1 (227101904-227102113) | |
| 162-327, gnl|Hg17|chr1 (227101943-227102108) | |
| 162-327, gnl|loxAfr1|scaffold_4961 (43893-43685) | |
| 162-327, gnl|mm7|chr8 (123112774-123112970) | |
| 162-327, gnl|Mm7|chr8 (123112800-123112965) | |
| 162-327, gnl|monDom2|scaffold_13 (59006195-59006404) | |
| 162-327, gnl|oryCun1|scaffold_198292 (254682-254473) | |
| 162-327, gnl|panTro1|chr1 (210949873-210950082) | |
| 162-327, gnl|rheMac2|chr1 (226308085-226307876) | |
| 162-327, gnl|rn3|chr19 (54712785-54712981) | |
| 162-327, gnl|tetNig1|chrUn_random (10034072-10034260) | |
| 162-327, gnl|xenTro1|scaffold_124 (1236386-1236169) | |
| 471-600, gnl|bosTau2|chr28 (34829666-34829536) | |
| 471-600, gnl|Hg17|chr1 (227106963-227107091) | |
| 471-600, gnl|Mm7|chr8 (123117067-123117188) | |
| 685-863, gnl|bosTau2|chr28 (34826905-34826727) | |
| 685-863, gnl|canFam2|chr4 (11725585-11725389) | |
| 685-863, gnl|danRer3|chr13 (28646440-28646633) | |
| 685-863, gnl|dasNov1|scaffold_100823 (4014-3818) | |
| 685-863, gnl|echTel1|scaffold_171592 (1242-1046) | |
| 685-863, gnl|fr1|chrUn (135859417-135859234) | |
| 685-863, gnl|galGal2|chr3 (36599339-36599535) | |
| 685-863, gnl|hg17|chr1 (227111830-227112026) | |
| 685-863, gnl|Hg17|chr1 (227111837-227112015) | |
| 685-863, gnl|loxAfr1|scaffold_4961 (33090-32894) | |
| 685-863, gnl|mm7|chr8 (123120378-123120574) | |
| 685-863, gnl|Mm7|chr8 (123120385-123120563) | |
| 685-863, gnl|monDom2|scaffold_13 (59037571-59037767) | |
| 685-863, gnl|oryCun1|scaffold_198292 (241652-241456) | |
| 685-863, gnl|panTro1|chr1 (210959562-210959758) | |
| 685-863, gnl|rheMac2|chr1 (226298331-226298135) | |
| 685-863, gnl|rn3|chr19 (54720958-54721154) | |
| 685-863, gnl|tetNig1|chrUn_random (10035373-10035562) | |
| 685-863, gnl|xenTro1|scaffold_124 (1229139-1228946) | |
| 865-990, gnl|bosTau2|chr28 (34825088-34824963) | |
| 865-990, gnl|canFam2|chr4 (11723722-11723565) | |
| 865-990, gnl|danRer3|chr13 (28650107-28650266) | |
| 865-990, gnl|fr1|chrUn (135859170-135859025) | |
| 865-990, gnl|galGal2|chr3 (36601384-36601547) | |
| 865-990, gnl|hg17|chr1 (227113968-227114127) | |
| 865-990, gnl|Hg17|chr1 (227113996-227114121) | |
| 865-990, gnl|loxAfr1|scaffold_34241 (3423-3266) | |
| 865-990, gnl|mm7|chr8 (123122437-123122700) | |
| 865-990, gnl|Mm7|chr8 (123122569-123122694) | |
| 865-990, gnl|monDom2|scaffold_13 (59049005-59049159) | |
| 865-990, gnl|panTro1|chr1 (210961716-210961875) | |
| 865-990, gnl|rheMac2|chr1 (226296160-226296001) | |
| 865-990, gnl|rn3|chr19 (54722897-54723053) | |
| 865-990, gnl|tetNig1|chrUn_random (10035633-10035762) | |
| 865-990, gnl|xenTro1|scaffold_124 (1228370-1228216) | |
| 1116-1236, gnl|bosTau2|chr28 (34818960-34818840) | |
| 1116-1236, gnl|canFam2|chr4 (11717091-11716901) | |
| 1116-1236, gnl|danRer3|chr13 (28650606-28650784) | |
| 1116-1236, gnl|dasNov1|scaffold_116932 (622-822) | |
| 1116-1236, gnl|echTel1|scaffold_41288 (3977-3792) | |
| 1116-1236, gnl|fr1|chrUn (135858777-135858598) | |
| 1116-1236, gnl|galGal2|chr3 (36606297-36606485) | |
| 1116-1236, gnl|hg17|chr1 (227121362-227121549) | |
| 1116-1236, gnl|Hg17|chr1 (227121392-227121512) | |
| 1116-1236, gnl|loxAfr1|scaffold_4961 (19358-19174) | |
| 1116-1236, gnl|mm7|chr8 (123128110-123128299) | |
| 1116-1236, gnl|Mm7|chr8 (123128142-123128262) | |
| 1116-1236, gnl|monDom2|scaffold_13 (59054787-59054962) | |
| 1116-1236, gnl|oryCun1|scaffold_198292 (231879-231697) | |
| 1116-1236, gnl|panTro1|chr1 (210969220-210969408) | |
| 1116-1236, gnl|rheMac2|chr1 (226288757-226288569) | |
| 1116-1236, gnl|rn3|chr19 (54728889-54729078) | |
| 1116-1236, gnl|xenTro1|scaffold_124 (1226003-1225825) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |