Non-Coding RNA Search

Ss1.1-Mixn-0004b09.5

Sequence:


               
               TATTTTACTGATGTCCACATCAGAAAGAATGCAGAGCTGTCGTTCAGTCTGTCTTAACAG
CTGGCTGTCCCAACAGGACGGCCTCCGTCCCAGCTCTCTCTCGATGGGCTTCTCAACCCA
TTGTCTGTTAGAGTCCTTGCCATTTGTCAGCGTCTGCCTCGCCACCTCTGTGCTTGCTAA
CGTCCCCCTGCATGTCTAGAGGGATGGAGTTTAGATTTTCAGGCATGCCTTTAAGACCCC
TTGTTCTCGTCGAAGCTTTTGTTTTGTTTTACACTTGTAGTGCACATCACTCTGTCAGAC
ACCTCCAGCACGAGTGTTCCCATCGTAGTGTTTGTGTGCGCTGCTGTAACTTCCCCACTG
CAGAACATTCCAGTTTGGGCATTGCGAAGACGTAGTTGTGAACCCCAAGTGTTTATGACC
GGAAAAAGAACCATCTCTGCTCTAGCCTACAGCCCAGTTGAAGGAACTCTTTGAAACGCG
ATACACCTTTAGCACCGCAGTCGGGGAAGAGTCTGTGTCAGCACTGAAAGGACCCTCACC
ACCTCAAGACCGAGGACTGGCCTCAGAAGTCAGCCGCTTCCATTCAGACGCTGCCTTAAA
CTAGAGTGCCTGCATCTTTGATGGCCAACACTACCGCTCAGTATCCCACAAAGGGCTTCG
TGTGTCAGCTCAGTGCGACCTCCTTGAACTTGGCAGAGCTGCCGCGGCTGCCGACCCAAC
CTCGGTAGGTGGCTCTTAGAGCTCTACCGTGTTGATGGTGCATCTTCAAGTTTCTGCATC
AAACTAAAGATGTGTCCAAGTCCATTTTACTCAGTGTTTTCATGAGTTTTGTGGTCCTCT
CCCCCCACTGTTTTTTAATTTGGGGTTACCCTGTTCTCATTTAACTATTATAGTGATAGT
CTGCTTCCAAGTGATGATTTTGTTTGAACCAGATAAAATTTAGTGAAACTTTGTAATGAT
CTATGTGCACTTTTACTTGTAAAATGGGAATTTCTGTATGTTTATACTTGTAAATATAAT
CGTCCTTAGTGCTCCTATTGCTCCTGTTGTCCCGGCTCGCATTTGTGCTTCTGTTCATGA
CTTGTATCCTAACTGGTTTCTTAGTGGTGGTTAAGGAGGAGGGGTTGGGGGCGGGGGGAT
ATTTGTAACATGGAAGCTTCGTTAATTTGGTTCTTTACTGTTCTGAAGGAAGAAAGAGAA
CGTGAAATGGTCTGTGTATTGTTGGATTTTAAGCAATATTTTAGAAGCTGTGTGACTGCT
TTAATAATGTTCCCCAGTGTTGTTTGAATCGTACTGCCAGTTATACTAAAGACGAATGAC
GTTGCGTGGAAGGTGACGCCTTCGTAAGATCAAGTTCGCCCCGTTACACAGCCGACATAG
AGTGTATGACCTTTAAGGCTAGTAAGCTAGGACGTTTTAGATTTTAATTCTCGTTACAGG
GTTATTTATATAATGTGACATTATTCAATACTGACAGACTACGTACGGTAGTTTTAAAAT
CCAGTGCTGTTTTTATTTTAAAGGTTAGCAGTGAAGAGGAAATGTGACCTGACCGTGCAG
GCCTCTGTACAAAGCGTGCAGGGCTTGTGGGTCTGTGGCTGGCAGCCACAGAGGGCAAAG
TTTAAGGCTTTCTTGTGAGGACTGACTGTTCTTCTCAAGCTACTGTTTGTTTTCCTTGAA
GCAGGATTTGCTTCCGTAGGAGGCAGTTCCTTCATGTGGGATAGTGCAACCTGTTTATCA
CGTAGGAAAGACATTTGTACTTGCACAGTTTAAATCATTCTTAAATTTGGAACATGTGAA
TTGTCCAGAAGAAATCTTTAGTTTTTCAGTAATTTTTACTCTTTGTGCCCACATTGATTT
CCTAATGTAAATGCTCTGTTTGAGATGGTGTTCTCTGTTGAGAATATTTTCATGGAATAA
AACAATCTTTTCATGGTCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTTACTGATGTCCACATCAGAAAGAATGCAGAGCTGTCGTTCAGTCTGTCTTAACAG
CTGGCTGTCCCAACAGGACGGCCTCCGTCCCAGCTCTCTCTCGATGGGCTTCTCAACCCA
TTGTCTGTTAGAGTCCTTGCCATTTGTCAGCGTCTGCCTCGCCACCTCTGTGCTTGCTAA
CGTCCCCCTGCATGTCTAGAGGGATGGAGTTTAGATTTTCAGGCATGCCTTTAAGACCCC
TTGTTCTCGTCGAAGCTTTTGTTTTGTTTTACACTTGTAGTGCACATCACTCTGTCAGAC
ACCTCCAGCACGAGTGTTCCCATCGTAGTGTTTGTGTGCGCTGCTGTAACTTCCCCACTG
CAGAACATTCCAGTTTGGGCATTGCGAAGACGTAGTTGTGAACCCCAAGTGTTTATGACC
GGAAAAAGAACCATCTCTGCTCTAGCCTACAGCCCAGTTGAAGGAACTCTTTGAAACGCG
ATACACCTTTAGCACCGCAGTCGGGGAAGAGTCTGTGTCAGCACTGAAAGGACCCTCACC
ACCTCAAGACCGAGGACTGGCCTCAGAAGTCAGCCGCTTCCATTCAGACGCTGCCTTAAA
CTAGAGTGCCTGCATCTTTGATGGCCAACACTACCGCTCAGTATCCCACAAAGGGCTTCG
TGTGTCAGCTCAGTGCGACCTCCTTGAACTTGGCAGAGCTGCCGCGGCTGCCGACCCAAC
CTCGGTAGGTGGCTCTTAGAGCTCTACCGTGTTGATGGTGCATCTTCAAGTTTCTGCATC
AAACTAAAGATGTGTCCAAGTCCATTTTACTCAGTGTTTTCATGAGTTTTGTGGTCCTCT
CCCCCCACTGTTTTTTAATTTGGGGTTACCCTGTTCTCATTTAACTATTATAGTGATAGT
CTGCTTCCAAGTGATGATTTTGTTTGAACCAGATAAAATTTAGTGAAACTTTGTAATGAT
CTATGTGCACTTTTACTTGTAAAATGGGAATTTCTGTATGTTTATACTTGTAAATATAAT
CGTCCTTAGTGCTCCTATTGCTCCTGTTGTCCCGGCTCGCATTTGTGCTTCTGTTCATGA
CTTGTATCCTAACTGGTTTCTTAGTGGTGGTTAAGGAGGAGGGGTTGGGGGCGGGGGGAT
ATTTGTAACATGGAAGCTTCGTTAATTTGGTTCTTTACTGTTCTGAAGGAAGAAAGAGAA
CGTGAAATGGTCTGTGTATTGTTGGATTTTAAGCAATATTTTAGAAGCTGTGTGACTGCT
TTAATAATGTTCCCCAGTGTTGTTTGAATCGTACTGCCAGTTATACTAAAGACGAATGAC
GTTGCGTGGAAGGTGACGCCTTCGTAAGATCAAGTTCGCCCCGTTACACAGCCGACATAG
AGTGTATGACCTTTAAGGCTAGTAAGCTAGGACGTTTTAGATTTTAATTCTCGTTACAGG
GTTATTTATATAATGTGACATTATTCAATACTGACAGACTACGTACGGTAGTTTTAAAAT
CCAGTGCTGTTTTTATTTTAAAGGTTAGCAGTGAAGAGGAAATGTGACCTGACCGTGCAG
GCCTCTGTACAAAGCGTGCAGGGCTTGTGGGTCTGTGGCTGGCAGCCACAGAGGGCAAAG
TTTAAGGCTTTCTTGTGAGGACTGACTGTTCTTCTCAAGCTACTGTTTGTTTTCCTTGAA
GCAGGATTTGCTTCCGTAGGAGGCAGTTCCTTCATGTGGGATAGTGCAACCTGTTTATCA
CGTAGGAAAGACATTTGTACTTGCACAGTTTAAATCATTCTTAAATTTGGAACATGTGAA
TTGTCCAGAAGAAATCTTTAGTTTTTCAGTAATTTTTACTCTTTGTGCCCACATTGATTT
CCTAATGTAAATGCTCTGTTTGAGATGGTGTTCTCTGTTGAGAATATTTTCATGGAATAA
AACAATCTTTTCATGGTCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1842-1956, + strand, RNAz p=0.537738

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1842-1956, + strand, RNAz p=0.537738

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1880-1927, + strand, RNAmicro p=0.924249

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1880-1927, + strand, RNAmicro p=0.924249

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1786-1956, gnl|bosTau2|chr10 (6077662-6077834)
               

               
               1786-1956, gnl|Hg17|chr6 (4055095-4055242)
               

               
               1786-1956, gnl|Mm7|chr3 (122309318-122309166)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1786-1956, gnl|bosTau2|chr10 (6077662-6077834)
               

               
               1786-1956, gnl|Hg17|chr6 (4055095-4055242)
               

               
               1786-1956, gnl|Mm7|chr3 (122309318-122309166)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               ski (0.29347)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1786-1956, gnl\|bosTau2\|chr10 (6077662-6077834)
	1786-1956, gnl\|Hg17\|chr6 (4055095-4055242)
	1786-1956, gnl\|Mm7\|chr3 (122309318-122309166)

	ski (0.29347)
	pgl (0.236967)
	ece (0.229305)
	spc (0.226732)
	eye (0.170503)
	cut (0.169924)
	fhi (0.169578)
	nco (0.161734)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	cst (0.140036)
	nca (0.136874)
	ssp (0.13552)
	lyg (0.133103)
	sug (0.127291)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)