Non-Coding RNA Search

Ss1.1-Mixn-0004e14.5

Sequence:


               
               TGCTGATGAGGACGACGAAGATGGAGAGAGTGCAGGGGATGAGGAGGAGGAAGAGGAGGA
TGGTGGAAGCTCCGTGGAGAGTGAGGCTGAGGCCTCGGTGGATCCCAGCTTGTCGTGGGG
TCAGAGGAAAAAAGTTTACTATGACACGGACTATGGGTCCAAGTCCCGAGGCCGGCGGAG
CCAACAAGAAGTAGAAGAAGAGGAAAGAGAGGAGGAGGAGGAGGCACAGCTCATTCAGCG
GCGCTTAGCCCAGACCCTGCAGGAGGACGATTTTGGAGTCACCTGGGTGACTGCCTTTGC
AAAACCAGCACCTCAAGTAAATGAGGCTGAGACACGCGTCGTGAAGGATTTGGCGAAAAT
TTCAGTGAAAGAGAAGCTGAAGATGCTGCGGAAGGAATCACCAGAGCTCTTGGAGCTGAT
AGATGACCTGAAAGTTAAGTTGACAGAGATGAAGGATGAACTGGAGCCATTGCTCCAGTT
GGTGGAGCAAAGAGTCATTCCACCTGGAAAAGGAAGCCAGTACCTGAGGACCAAGTACAA
CCTCTACTTGAACTACTGCTCCAACATCAGTTTTTATTTGATCCTGAAAGCTCGGAGAGT
TCCTGCACATGGACATCCTGTCATAGAAAGGCTTGTTACCTATCGAAATTTGATCAACAA
GCTGTCAGTTGTGGATGAGAAGCTGTCCTCTGAGATTCGTCATCTACTCACACTTAAAGA
TGGTGCTGGAAAGAAAGAACTGACCCTAAAAGTAAAATCCACGAAGGCTAAGCCAAAATC
TGTTTCAGAGACTTCAGCTGCTGCTGTTACAGACCTTTCTGATGATTCTGATTTTGATGA
AGAAGCTGCACTGAAATACTATAAAGAAATAGAAGACAGGCAAAAATTGAAGAGAAAGAA
AGAAGAAAATAGTACTGAAGAACAAGCTCTTGAAGATCAAAATGCAAAGAGAGCCATTAC
TTACCAGATTGCTAAAAACAGGGGACTTACCCCTAGGAGAAAGAAGATTGATCGTAATCC
CAGAGTGAAACACCGGGAGAAGTTCAGAAGAGCCAAAATCCGAAGAAGAGGCCAGGTTCG
GGAAGTTCGTAGAGAAGAGCAACGTTATAGTGGTGAACTATCTGGTATTCGTGCTGGAGT
TAAAAAGAGCATTAAGCTTAAGTAAAGTTTTTGCTTGGCTTAAGTTTTTTGGTAATATTT
TTAGAACAATAAATTTTTTTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGATGAGGACGACGAAGATGGAGAGAGTGCAGGGGATGAGGAGGAGGAAGAGGAGGA
TGGTGGAAGCTCCGTGGAGAGTGAGGCTGAGGCCTCGGTGGATCCCAGCTTGTCGTGGGG
TCAGAGGAAAAAAGTTTACTATGACACGGACTATGGGTCCAAGTCCCGAGGCCGGCGGAG
CCAACAAGAAGTAGAAGAAGAGGAAAGAGAGGAGGAGGAGGAGGCACAGCTCATTCAGCG
GCGCTTAGCCCAGACCCTGCAGGAGGACGATTTTGGAGTCACCTGGGTGACTGCCTTTGC
AAAACCAGCACCTCAAGTAAATGAGGCTGAGACACGCGTCGTGAAGGATTTGGCGAAAAT
TTCAGTGAAAGAGAAGCTGAAGATGCTGCGGAAGGAATCACCAGAGCTCTTGGAGCTGAT
AGATGACCTGAAAGTTAAGTTGACAGAGATGAAGGATGAACTGGAGCCATTGCTCCAGTT
GGTGGAGCAAAGAGTCATTCCACCTGGAAAAGGAAGCCAGTACCTGAGGACCAAGTACAA
CCTCTACTTGAACTACTGCTCCAACATCAGTTTTTATTTGATCCTGAAAGCTCGGAGAGT
TCCTGCACATGGACATCCTGTCATAGAAAGGCTTGTTACCTATCGAAATTTGATCAACAA
GCTGTCAGTTGTGGATGAGAAGCTGTCCTCTGAGATTCGTCATCTACTCACACTTAAAGA
TGGTGCTGGAAAGAAAGAACTGACCCTAAAAGTAAAATCCACGAAGGCTAAGCCAAAATC
TGTTTCAGAGACTTCAGCTGCTGCTGTTACAGACCTTTCTGATGATTCTGATTTTGATGA
AGAAGCTGCACTGAAATACTATAAAGAAATAGAAGACAGGCAAAAATTGAAGAGAAAGAA
AGAAGAAAATAGTACTGAAGAACAAGCTCTTGAAGATCAAAATGCAAAGAGAGCCATTAC
TTACCAGATTGCTAAAAACAGGGGACTTACCCCTAGGAGAAAGAAGATTGATCGTAATCC
CAGAGTGAAACACCGGGAGAAGTTCAGAAGAGCCAAAATCCGAAGAAGAGGCCAGGTTCG
GGAAGTTCGTAGAGAAGAGCAACGTTATAGTGGTGAACTATCTGGTATTCGTGCTGGAGT
TAAAAAGAGCATTAAGCTTAAGTAAAGTTTTTGCTTGGCTTAAGTTTTTTGGTAATATTT
TTAGAACAATAAATTTTTTTTATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q95KE7_MACFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q95KE7_MACFA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-190, - strand, RNAz p=0.875737
               

               
               431-550, - strand, RNAz p=0.58934
               

               
               825-944, - strand, RNAz p=0.902058

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-190, - strand, RNAz p=0.875737
               

               
               431-550, - strand, RNAz p=0.58934
               

               
               825-944, - strand, RNAz p=0.902058

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-955, gnl|bosTau2|chr6 (48352875-48353826)
               

               
               1-955, gnl|Hg17|chr4 (71919690-71920658)
               

               
               1-955, gnl|Mm7|chr5 (88495327-88496272)
               


               
               1087-1224, gnl|bosTau2|chr6 (48353877-48354014)
               

               
               1087-1224, gnl|Hg17|chr4 (71920791-71920925)
               

               
               1087-1224, gnl|Mm7|chr5 (88496404-88496538)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-955, gnl|bosTau2|chr6 (48352875-48353826)
               

               
               1-955, gnl|Hg17|chr4 (71919690-71920658)
               

               
               1-955, gnl|Mm7|chr5 (88495327-88496272)
               


               
               1087-1224, gnl|bosTau2|chr6 (48353877-48354014)
               

               
               1087-1224, gnl|Hg17|chr4 (71920791-71920925)
               

               
               1087-1224, gnl|Mm7|chr5 (88496404-88496538)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cbe (0.478469)
               

               
               sto (0.359648)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               sto (0.359648)
               

               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	40-190, - strand, RNAz p=0.875737
	431-550, - strand, RNAz p=0.58934
	825-944, - strand, RNAz p=0.902058

	1-955, gnl\|bosTau2\|chr6 (48352875-48353826)
	1-955, gnl\|Hg17\|chr4 (71919690-71920658)
	1-955, gnl\|Mm7\|chr5 (88495327-88496272)

	1087-1224, gnl\|bosTau2\|chr6 (48353877-48354014)
	1087-1224, gnl\|Hg17\|chr4 (71920791-71920925)
	1087-1224, gnl\|Mm7\|chr5 (88496404-88496538)

	cbe (0.478469)
	sto (0.359648)
	vin (0.332557)
	kid (0.259471)
	thg (0.253582)
	mgp (0.230681)
	nms (0.213858)
	aor (0.195274)
	rec (0.17307)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	ssp (0.13552)
	ova (0.129132)
	med (0.116252)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)