Ss1.1-Mixn-0004e15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGCAAAGTCCGGGTGGAGAGCGGCTACTTCTCCCTGGAGAAGACCAAGCAGGACGTG AAGGCCGAGGAGCAGCAGCTGCCGCCGCCGCTCTCCCCTCCCAGCCCCAGCGCCCCCAAC ACCAGGCGGTCTCAGGTCATTGAGAAGTTTGAGGCCTTGGACATCGAGAAGGCGGAGCAC ATGGAGACCAACGCGTCGGCTGGGCCCTCGCCATCGAGCGACACGCGCCAGGGCCGCAGC GAGAAGAGGGCGTTTCCCAGGAAGCGGGACCTCCCCAGCGACGCGCCTCTCCCGGACACC TCGGCCTCCCCCCTGTCTCCACACCGAAGAGCCAAGTCACTGGACAGGAGGTCCACGGAG TCCTCCCTGACGCCCGACCTGCTGAATTTCAAGAAAGGCTGGCTGACCAAGCAGTACGAG GATGGCCAGTGGAAGAAGCACTGGTTTGTCCTTGCTGATCAAAGCCTGAGGTTCTACAGG GACTCGGTGGCTGAGGAGGCCGCGGACCTGGACGGGGAAATTGACTTGTCCACGTGTTGC GACGTCACAGAGTATCCCGTGCAGAGAAACTACGGCTTTCAGATACACACCAAGGAGGGC GCCTTCACCCTGTCTGCCATGACGTCTGGCATCCGGCGGAACTGGATCCAGACCATCGTG AAGCACGTCCACCCGACCTCCGCCCCGGACGTGACGAGCTCGTTGCCACAGGAAAAGAAG CGGAGCAGCTCCCCCTTGGAGACCTGCCCGAGGCCGCGGGAGACGCAGGACGGGGAGCCC AGGGAGCCAGACCCGGAGCAGAAGAGGAGCCGGGCTCGGGAGCGCCGGCGGGAGGGCCGC TCCAAGACCTTTGACTGGGCCGAGTTCCGCCCCATCCAGCAGGCCCTGGCCCAGGAGAGG GCTGGCGGCGCCCCGGGGCCCCCCGACGCCCACCCCGCGGCAGAGCCCGGCGAGCTGGAG CGGGAGCGTGCACGGCGGCGGGAGGAGCGCCGAAAGCGCGCCGAGGGGCTGGGCGCCGAC GACGCAGCCCTGCGCATGGAGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGCAAAGTCCGGGTGGAGAGCGGCTACTTCTCCCTGGAGAAGACCAAGCAGGACGTG AAGGCCGAGGAGCAGCAGCTGCCGCCGCCGCTCTCCCCTCCCAGCCCCAGCGCCCCCAAC ACCAGGCGGTCTCAGGTCATTGAGAAGTTTGAGGCCTTGGACATCGAGAAGGCGGAGCAC ATGGAGACCAACGCGTCGGCTGGGCCCTCGCCATCGAGCGACACGCGCCAGGGCCGCAGC GAGAAGAGGGCGTTTCCCAGGAAGCGGGACCTCCCCAGCGACGCGCCTCTCCCGGACACC TCGGCCTCCCCCCTGTCTCCACACCGAAGAGCCAAGTCACTGGACAGGAGGTCCACGGAG TCCTCCCTGACGCCCGACCTGCTGAATTTCAAGAAAGGCTGGCTGACCAAGCAGTACGAG GATGGCCAGTGGAAGAAGCACTGGTTTGTCCTTGCTGATCAAAGCCTGAGGTTCTACAGG GACTCGGTGGCTGAGGAGGCCGCGGACCTGGACGGGGAAATTGACTTGTCCACGTGTTGC GACGTCACAGAGTATCCCGTGCAGAGAAACTACGGCTTTCAGATACACACCAAGGAGGGC GCCTTCACCCTGTCTGCCATGACGTCTGGCATCCGGCGGAACTGGATCCAGACCATCGTG AAGCACGTCCACCCGACCTCCGCCCCGGACGTGACGAGCTCGTTGCCACAGGAAAAGAAG CGGAGCAGCTCCCCCTTGGAGACCTGCCCGAGGCCGCGGGAGACGCAGGACGGGGAGCCC AGGGAGCCAGACCCGGAGCAGAAGAGGAGCCGGGCTCGGGAGCGCCGGCGGGAGGGCCGC TCCAAGACCTTTGACTGGGCCGAGTTCCGCCCCATCCAGCAGGCCCTGGCCCAGGAGAGG GCTGGCGGCGCCCCGGGGCCCCCCGACGCCCACCCCGCGGCAGAGCCCGGCGAGCTGGAG CGGGAGCGTGCACGGCGGCGGGAGGAGCGCCGAAAGCGCGCCGAGGGGCTGGGCGCCGAC GACGCAGCCCTGCGCATGGAGGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-126, - strand, RNAz p=0.82986 | |
| 267-372, - strand, RNAz p=0.723057 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-126, - strand, RNAz p=0.82986 | |
| 267-372, - strand, RNAz p=0.723057 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr19 (27386312-27386187) | |
| 1-126, gnl|canFam2|chr5 (45275612-45275313) | |
| 1-126, gnl|canFam2|chr5 (45275446-45275585) | |
| 1-126, gnl|danRer3|chr24 (33005979-33006190) | |
| 1-126, gnl|dasNov1|scaffold_3422 (42840-42709) | |
| 1-126, gnl|dasNov1|scaffold_52454 (318-614) | |
| 1-126, gnl|echTel1|scaffold_277864 (58335-58036) | |
| 1-126, gnl|echTel1|scaffold_277864 (58175-58308) | |
| 1-126, gnl|fr1|chrUn (21999449-21999767) | |
| 1-126, gnl|fr1|chrUn (21999597-21999449) | |
| 1-126, gnl|galGal2|chr14 (6796040-6796339) | |
| 1-126, gnl|galGal2|chr14 (6796206-6796093) | |
| 1-126, gnl|hg17|chr17 (16981950-16982249) | |
| 1-126, gnl|Hg17|chr17 (16981990-16982115) | |
| 1-126, gnl|hg17|chr3 (44596636-44596775) | |
| 1-126, gnl|loxAfr1|scaffold_10528 (56566-56267) | |
| 1-126, gnl|loxAfr1|scaffold_10528 (56406-56539) | |
| 1-126, gnl|mm7|chr11 (59818612-59818908) | |
| 1-126, gnl|mm7|chr11 (59818772-59818639) | |
| 1-126, gnl|Mm7|chr11 (59818652-59818774) | |
| 1-126, gnl|monDom2|scaffold_193 (46396-46695) | |
| 1-126, gnl|monDom2|scaffold_193 (46562-46423) | |
| 1-126, gnl|oryCun1|scaffold_193579 (6813-7113) | |
| 1-126, gnl|oryCun1|scaffold_193579 (6977-6840) | |
| 1-126, gnl|panTro1|chr19 (17381644-17381943) | |
| 1-126, gnl|panTro1|chr2 (45885392-45885531) | |
| 1-126, gnl|rheMac2|chr16 (17034598-17034897) | |
| 1-126, gnl|rheMac2|chr16 (17034761-17034625) | |
| 1-126, gnl|rn3|chr10 (46064617-46064913) | |
| 1-126, gnl|rn3|chr10 (46064777-46064644) | |
| 1-126, gnl|tetNig1|chr2 (4958438-4958150) | |
| 1-126, gnl|tetNig1|chr2 (4958301-4958438) | |
| 1-126, gnl|xenTro1|scaffold_142 (407057-407302) | |
| 1-126, gnl|xenTro1|scaffold_142 (407214-407084) | |
| 267-372, gnl|bosTau2|chr19 (27381851-27381746) | |
| 267-372, gnl|Hg17|chr17 (16987594-16987708) | |
| 267-372, gnl|Mm7|chr11 (59823535-59823643) | |
| 669-999, gnl|bosTau2|chr19 (27373348-27373042) | |
| 669-999, gnl|Hg17|chr17 (17002434-17002780) | |
| 669-999, gnl|Mm7|chr11 (59834027-59834341) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr19 (27386312-27386187) | |
| 1-126, gnl|canFam2|chr5 (45275612-45275313) | |
| 1-126, gnl|canFam2|chr5 (45275446-45275585) | |
| 1-126, gnl|danRer3|chr24 (33005979-33006190) | |
| 1-126, gnl|dasNov1|scaffold_3422 (42840-42709) | |
| 1-126, gnl|dasNov1|scaffold_52454 (318-614) | |
| 1-126, gnl|echTel1|scaffold_277864 (58335-58036) | |
| 1-126, gnl|echTel1|scaffold_277864 (58175-58308) | |
| 1-126, gnl|fr1|chrUn (21999449-21999767) | |
| 1-126, gnl|fr1|chrUn (21999597-21999449) | |
| 1-126, gnl|galGal2|chr14 (6796040-6796339) | |
| 1-126, gnl|galGal2|chr14 (6796206-6796093) | |
| 1-126, gnl|hg17|chr17 (16981950-16982249) | |
| 1-126, gnl|Hg17|chr17 (16981990-16982115) | |
| 1-126, gnl|hg17|chr3 (44596636-44596775) | |
| 1-126, gnl|loxAfr1|scaffold_10528 (56566-56267) | |
| 1-126, gnl|loxAfr1|scaffold_10528 (56406-56539) | |
| 1-126, gnl|mm7|chr11 (59818612-59818908) | |
| 1-126, gnl|mm7|chr11 (59818772-59818639) | |
| 1-126, gnl|Mm7|chr11 (59818652-59818774) | |
| 1-126, gnl|monDom2|scaffold_193 (46396-46695) | |
| 1-126, gnl|monDom2|scaffold_193 (46562-46423) | |
| 1-126, gnl|oryCun1|scaffold_193579 (6813-7113) | |
| 1-126, gnl|oryCun1|scaffold_193579 (6977-6840) | |
| 1-126, gnl|panTro1|chr19 (17381644-17381943) | |
| 1-126, gnl|panTro1|chr2 (45885392-45885531) | |
| 1-126, gnl|rheMac2|chr16 (17034598-17034897) | |
| 1-126, gnl|rheMac2|chr16 (17034761-17034625) | |
| 1-126, gnl|rn3|chr10 (46064617-46064913) | |
| 1-126, gnl|rn3|chr10 (46064777-46064644) | |
| 1-126, gnl|tetNig1|chr2 (4958438-4958150) | |
| 1-126, gnl|tetNig1|chr2 (4958301-4958438) | |
| 1-126, gnl|xenTro1|scaffold_142 (407057-407302) | |
| 1-126, gnl|xenTro1|scaffold_142 (407214-407084) | |
| 267-372, gnl|bosTau2|chr19 (27381851-27381746) | |
| 267-372, gnl|Hg17|chr17 (16987594-16987708) | |
| 267-372, gnl|Mm7|chr11 (59823535-59823643) | |
| 669-999, gnl|bosTau2|chr19 (27373348-27373042) | |
| 669-999, gnl|Hg17|chr17 (17002434-17002780) | |
| 669-999, gnl|Mm7|chr11 (59834027-59834341) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |