Non-Coding RNA Search

Ss1.1-Mixn-0004j09.5

Sequence:


               
               ATACTGGAGGACTTGGAAGAAGCATAACATCTCCAACCACATTATATGATAGGTACAGCT
CTCCAACAGCCAGCTCTACCAGAAGGCGGTTATTTGTTGAGAATGATAGCCCCACTGATG
GAGGGACCCCTGGGCGCCTTCCCCCACAGCCTCTCGTCAATACTGTCCCTGTGCAGAATG
TATCTGGAGAAGCAGTTTCTGTCACACCAGTTCCTGGACAGACTTTGGTCACCATGGCAA
CAGCCACTGTCACAGCCAACAATGGACAAACAGTGACCATTCCTGTACAAGGCATTGCCA
ATGAAAATGGAGGAATAACATTCTTTCCAGTGCAAGTCAATGTTGGAGGGCAGGCGCAAG
CTGTGACTGGCTCCATCCAGCCCCTCAGTGCTCAGGCCCTGGCTGGAAGTTTAAGCTCTC
AACAGGTGACAGGAACAGCCTTGCAAGTCCCTGGTCAGGTGGCCATTCAACAGATTTCCC
CAGGTGGACAACAGCAGAAACAAGGCCTGCCTTTAACCAGCAGCAGTGTAAGACCCAGGA
AGACAAGCTCTTTATCGCTTTTCTTTAGAAAGGTTTACCACTTAGCAGGTGTCCGCCTCC
GAGATCTTTGTGCTAAACTGGATATTTCAGATGAACTGAGGAAAAAAATCTGGACCTGCT
TTGAATTCTCCATAATTCAGTGTCCTGAACTTATGATGGACAGACATCTGGACCAGTTGT
TAATGTGTGCCATTTATGTGATGGCAAAAGTCACAAAAGAAGACAAGTCCTTCCAGAATA
TTATGCGTTGCTATAGGACTCAGCCACAAGCCCGAAGCCAGGTGTATAGAAGCGTTTTGA
TAAAAGGGAAAAGGAAAAGGAGAAATTCTGGCAGCAGTGATAGTAGAAGTCATCAGAATT
CTCCAACAGAACTGAACAAAGATAGAACCAGTAGAGACTCCAGTCCTGTCATGAGGTCAA
GCAGCACCTTGCCTGTTCCACAGCCCAGCAGTGCCCCTCCTACACCTACTCGCCTCACAG
GTGCCAACAGTGACATGGAAGAGGAGGAGAGGGGAGATCTTATTCAGTTCTACAACAGCA
TCTACATAAAACAAATTAAAACATTTGCCCTGAAGTACTCACAGGCAAATGTAATGGATG
CTCCTCCACTCTCTCCCTATCCATTTATAAGATCAGGCTCGCCTCGCCGAATACAGTTGT
CTCAAAATCATCCTGTCTACATTTCCCCACATAAAAGTGAAGCAATGCTTTCTCCTCGAG
AAAAGATTTTCTACTACTTCAGCAACAGTCCTTCAAAGAGACTGAGAGAAATTAACAGTA
TGATACGGACAGGAGAAACTCCAACCAAAAAGAGAGGGATTCTTTTGGAAGATGGAAGTG
AATCACCCGCAAAAAGAATCTGCCCAGAAAATCATTCTGCCTTATTACGCCGTCTCCAAG
ATGTAGCTAATGACCGAGGTTCCCACTGAGGTTAGTCTGTTGTATTGAACCTGTCTTTTC
ACAAACTCTGTTTAGCAGCATCATTTAATGCATGCTAGAATGTAGGGCTCTTTTCCTTAA
TCCTTCCAGTATCTTTAGGATATTTTTACTCATCCCAGCTGCCTTTTTTCCTACCACTCA
GTGCTTGCCATTAAGGCTGCTGAGAATCCAAACTTGGATTTTTTTTTTTAACTCTTTGGC
AAAGCTATTACAAGTATCGCAGAGAACAGAGTGTACTCAGATATCTGTGGGAGAGGTCTC
TGTTAACATGTTCCAGCAGAGAAACTGTGTTTTAATTCATTCCTACCTGTTTTGTGGTCA
GCTCTAGCCCTCATGAAAAGCCAAACAAAAACTAGGTATTTTGTCCGAAAAAATTTGGTA
GGAGTGAAAGATTTTTGCATTCCTAAAAGGTAGCAAGATAGTGCCCGATTTGGAGGTCCT
AGGTTATTAGTCCAAGTCTCCCATTCCCTTTGTGTAATTTCTTTCCTCTCCCCATTAGGT
GTGGTGCAGTGTGACAAGTGCTTGATTGTGTGCAATGTGTGAGTGAACCTATAAGAAGTG
GCACTTTAGGGCTGTAAGAAGCATGATTTTGTAACCCAGATTTTGCTGTATATTTGCAAT
GGCACTTTCTACAATGTGAACTTTATTAAGTACAAAACTTCTAGGCTGAACTTAATTCAG
TGTCCTCTTTGATGCTTTTGTACTTTTTTTAAAAACTGTTAAAGCCCCAGTAGCTACCTT
TTGGACATGTGTTTTAAATTCTCCAGTTTTTTGTTAATAAGGATCAACGGGCTAAGTAAA
GATTTTAAATCAAGTTGAATTAAGGGATTATGAAAAATTATGACCTCTTCCTTTAGGAGG
TAGTTATCCAAAAGACACGTGTCTTTATTACGGTGAAATATTTTAAATATCTTTGGGTGT
GTTCCTGGCAGTTAAAAAAATAAAATAGGTTGGAGAATTTGGGGTTTTATTAGTACATAG
TACCGTTTTTACAAATTAGAAAATGCTAATTTAACAGCTATTGAATTATATATATATACA
TATATATATACACACACACCTTTATTAATCATTATTATTCCAGCAGTTTTCAAGTTGAAT
AATCTTATTAGGGAGAAAATTCAATTGTAAATTGAATCAGTATAAACAAAGTTACTAGGT
AACTTCATATTGCTCTGAAAGAAATACGGAACTCACACTGTTCACCTAGAATAGTGTTCT
GCAAAAATATTTATAAAAACCTCTCAAGATACTGCTACTGTAATTTTATATGAAAATAAG
TGTATTTTTCAATAAAGCGTTTATAAATTAAAAAAAGTTTAGTTATATTGAGAAAAGGGT
TTCAGTTTCCTGGATAAATGACAAAGAACAATCATTTATTGGTTTATTGTCTCTACAAAA
CACATTAGTCATTCATCATTTAAATATCTGACTTCATTAGAAACCATTTTAACACTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTGGAGGACTTGGAAGAAGCATAACATCTCCAACCACATTATATGATAGGTACAGCT
CTCCAACAGCCAGCTCTACCAGAAGGCGGTTATTTGTTGAGAATGATAGCCCCACTGATG
GAGGGACCCCTGGGCGCCTTCCCCCACAGCCTCTCGTCAATACTGTCCCTGTGCAGAATG
TATCTGGAGAAGCAGTTTCTGTCACACCAGTTCCTGGACAGACTTTGGTCACCATGGCAA
CAGCCACTGTCACAGCCAACAATGGACAAACAGTGACCATTCCTGTACAAGGCATTGCCA
ATGAAAATGGAGGAATAACATTCTTTCCAGTGCAAGTCAATGTTGGAGGGCAGGCGCAAG
CTGTGACTGGCTCCATCCAGCCCCTCAGTGCTCAGGCCCTGGCTGGAAGTTTAAGCTCTC
AACAGGTGACAGGAACAGCCTTGCAAGTCCCTGGTCAGGTGGCCATTCAACAGATTTCCC
CAGGTGGACAACAGCAGAAACAAGGCCTGCCTTTAACCAGCAGCAGTGTAAGACCCAGGA
AGACAAGCTCTTTATCGCTTTTCTTTAGAAAGGTTTACCACTTAGCAGGTGTCCGCCTCC
GAGATCTTTGTGCTAAACTGGATATTTCAGATGAACTGAGGAAAAAAATCTGGACCTGCT
TTGAATTCTCCATAATTCAGTGTCCTGAACTTATGATGGACAGACATCTGGACCAGTTGT
TAATGTGTGCCATTTATGTGATGGCAAAAGTCACAAAAGAAGACAAGTCCTTCCAGAATA
TTATGCGTTGCTATAGGACTCAGCCACAAGCCCGAAGCCAGGTGTATAGAAGCGTTTTGA
TAAAAGGGAAAAGGAAAAGGAGAAATTCTGGCAGCAGTGATAGTAGAAGTCATCAGAATT
CTCCAACAGAACTGAACAAAGATAGAACCAGTAGAGACTCCAGTCCTGTCATGAGGTCAA
GCAGCACCTTGCCTGTTCCACAGCCCAGCAGTGCCCCTCCTACACCTACTCGCCTCACAG
GTGCCAACAGTGACATGGAAGAGGAGGAGAGGGGAGATCTTATTCAGTTCTACAACAGCA
TCTACATAAAACAAATTAAAACATTTGCCCTGAAGTACTCACAGGCAAATGTAATGGATG
CTCCTCCACTCTCTCCCTATCCATTTATAAGATCAGGCTCGCCTCGCCGAATACAGTTGT
CTCAAAATCATCCTGTCTACATTTCCCCACATAAAAGTGAAGCAATGCTTTCTCCTCGAG
AAAAGATTTTCTACTACTTCAGCAACAGTCCTTCAAAGAGACTGAGAGAAATTAACAGTA
TGATACGGACAGGAGAAACTCCAACCAAAAAGAGAGGGATTCTTTTGGAAGATGGAAGTG
AATCACCCGCAAAAAGAATCTGCCCAGAAAATCATTCTGCCTTATTACGCCGTCTCCAAG
ATGTAGCTAATGACCGAGGTTCCCACTGAGGTTAGTCTGTTGTATTGAACCTGTCTTTTC
ACAAACTCTGTTTAGCAGCATCATTTAATGCATGCTAGAATGTAGGGCTCTTTTCCTTAA
TCCTTCCAGTATCTTTAGGATATTTTTACTCATCCCAGCTGCCTTTTTTCCTACCACTCA
GTGCTTGCCATTAAGGCTGCTGAGAATCCAAACTTGGATTTTTTTTTTTAACTCTTTGGC
AAAGCTATTACAAGTATCGCAGAGAACAGAGTGTACTCAGATATCTGTGGGAGAGGTCTC
TGTTAACATGTTCCAGCAGAGAAACTGTGTTTTAATTCATTCCTACCTGTTTTGTGGTCA
GCTCTAGCCCTCATGAAAAGCCAAACAAAAACTAGGTATTTTGTCCGAAAAAATTTGGTA
GGAGTGAAAGATTTTTGCATTCCTAAAAGGTAGCAAGATAGTGCCCGATTTGGAGGTCCT
AGGTTATTAGTCCAAGTCTCCCATTCCCTTTGTGTAATTTCTTTCCTCTCCCCATTAGGT
GTGGTGCAGTGTGACAAGTGCTTGATTGTGTGCAATGTGTGAGTGAACCTATAAGAAGTG
GCACTTTAGGGCTGTAAGAAGCATGATTTTGTAACCCAGATTTTGCTGTATATTTGCAAT
GGCACTTTCTACAATGTGAACTTTATTAAGTACAAAACTTCTAGGCTGAACTTAATTCAG
TGTCCTCTTTGATGCTTTTGTACTTTTTTTAAAAACTGTTAAAGCCCCAGTAGCTACCTT
TTGGACATGTGTTTTAAATTCTCCAGTTTTTTGTTAATAAGGATCAACGGGCTAAGTAAA
GATTTTAAATCAAGTTGAATTAAGGGATTATGAAAAATTATGACCTCTTCCTTTAGGAGG
TAGTTATCCAAAAGACACGTGTCTTTATTACGGTGAAATATTTTAAATATCTTTGGGTGT
GTTCCTGGCAGTTAAAAAAATAAAATAGGTTGGAGAATTTGGGGTTTTATTAGTACATAG
TACCGTTTTTACAAATTAGAAAATGCTAATTTAACAGCTATTGAATTATATATATATACA
TATATATATACACACACACCTTTATTAATCATTATTATTCCAGCAGTTTTCAAGTTGAAT
AATCTTATTAGGGAGAAAATTCAATTGTAAATTGAATCAGTATAAACAAAGTTACTAGGT
AACTTCATATTGCTCTGAAAGAAATACGGAACTCACACTGTTCACCTAGAATAGTGTTCT
GCAAAAATATTTATAAAAACCTCTCAAGATACTGCTACTGTAATTTTATATGAAAATAAG
TGTATTTTTCAATAAAGCGTTTATAAATTAAAAAAAGTTTAGTTATATTGAGAAAAGGGT
TTCAGTTTCCTGGATAAATGACAAAGAACAATCATTTATTGGTTTATTGTCTCTACAAAA
CACATTAGTCATTCATCATTTAAATATCTGACTTCATTAGAAACCATTTTAACACTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61863676|ref|XP_587581.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61863676|ref|XP_587581.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               329-2699, - strand, RNAz p=0.860662
               

               
               1297-1415, - strand, RNAz p=0.896861

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-2699, - strand, RNAz p=0.860662
               

               
               1297-1415, - strand, RNAz p=0.896861

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               290-574, gnl|bosTau2|chr18 (21146390-21146674)
               

               
               290-574, gnl|Hg17|chr16 (52061794-52062078)
               

               
               290-574, gnl|Mm7|chr8 (89699270-89699554)
               


               
               923-1131, gnl|bosTau2|chr18 (21154526-21154734)
               

               
               923-1131, gnl|Hg17|chr16 (52071975-52072183)
               

               
               923-1131, gnl|Mm7|chr8 (89707605-89707813)
               


               
               1297-2940, gnl|bosTau2|chr18 (21158063-21159671)
               

               
               1297-2940, gnl|Hg17|chr16 (52081541-52083210)
               

               
               1297-2940, gnl|Mm7|chr8 (89714843-89716560)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               290-574, gnl|bosTau2|chr18 (21146390-21146674)
               

               
               290-574, gnl|Hg17|chr16 (52061794-52062078)
               

               
               290-574, gnl|Mm7|chr8 (89699270-89699554)
               


               
               923-1131, gnl|bosTau2|chr18 (21154526-21154734)
               

               
               923-1131, gnl|Hg17|chr16 (52071975-52072183)
               

               
               923-1131, gnl|Mm7|chr8 (89707605-89707813)
               


               
               1297-2940, gnl|bosTau2|chr18 (21158063-21159671)
               

               
               1297-2940, gnl|Hg17|chr16 (52081541-52083210)
               

               
               1297-2940, gnl|Mm7|chr8 (89714843-89716560)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

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               cbl (3.67352)
               

               
               fco (0.78604)
               

               
               cst (0.700182)
               

               
               tes (0.623441)
               

               
               liv (0.438853)
               

               
               tra (0.369276)
               

               
               fbs (0.350693)
               

               
               cki (0.330469)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (3.67352)
               

               
               fco (0.78604)
               

               
               cst (0.700182)
               

               
               tes (0.623441)
               

               
               liv (0.438853)
               

               
               tra (0.369276)
               

               
               fbs (0.350693)
               

               
               cki (0.330469)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	329-2699, - strand, RNAz p=0.860662
	1297-1415, - strand, RNAz p=0.896861

	290-574, gnl\|bosTau2\|chr18 (21146390-21146674)
	290-574, gnl\|Hg17\|chr16 (52061794-52062078)
	290-574, gnl\|Mm7\|chr8 (89699270-89699554)

	923-1131, gnl\|bosTau2\|chr18 (21154526-21154734)
	923-1131, gnl\|Hg17\|chr16 (52071975-52072183)
	923-1131, gnl\|Mm7\|chr8 (89707605-89707813)

	1297-2940, gnl\|bosTau2\|chr18 (21158063-21159671)
	1297-2940, gnl\|Hg17\|chr16 (52081541-52083210)
	1297-2940, gnl\|Mm7\|chr8 (89714843-89716560)

	cbl (3.67352)
	fco (0.78604)
	cst (0.700182)
	tes (0.623441)
	liv (0.438853)
	tra (0.369276)
	fbs (0.350693)
	cki (0.330469)
	bfe (0.299715)
	hyp (0.285673)
	che (0.272628)
	pla (0.267344)
	sug (0.254582)
	jej (0.197844)
	ldo (0.194005)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	sin (0.174948)
	cut (0.169924)
	fhi (0.169578)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	kid (0.129735)
	ret (0.128733)
	cbr (0.127975)
	eep (0.122564)
	jca (0.11396)
	nbm (0.0993246)