Non-Coding RNA Search

Ss1.1-Mixn-0004k05.5

Sequence:


               
               GCATAGCACAGGAATGGCACTTTGGGGTTTTAAACCCAGGGTCCTTTCAGAGACCCAGGT
CCTTTTCTGATGGTCTTTCATATTCTATTTTGCCCTTCTGTCCATTCTGTCCCAGTTCTA
TTTTATTTGTATCCCCTTACAAGTGTGCCGAGTGCGGGAAGAGTTTCTCCCGCAGCTCAC
ACCTCGTCATACACGAGAGAACGCATGAGAAGGAGCGGCTGTGCCCCTTTTCTGAGGGCG
GGCAGGCAGTGAGCGACAGCAGCCTCTTTCTTACAAATCACGGGACCCACAAGGCAGAGA
AGAAGCTCTTTGAGTGTCTGACGTGTGGGAAAAGCTTCCGGCAGAGCATGCACCTCACCC
GGCACCAGAGGACGCACACCGGAGAGAAGCCGTACCAGTGTACCCTCTGTGGGGAAAACT
TCTCCCACAGATCCAACTTAATCAGGCACCAGAGAATCCACACGGGAGAGAAGCCCTACA
CCTGTCAGGAGTGTGGAGACAGTTTCTCCCACAGCTCCAACCGGATCCGTCACCTGAGAA
CCCACACGGGAGAGAGACCCTATAAATGTTCTCAATGCGGAGAAAGCTTTTCGAGGAGTT
CTCGCCTCCTGAGTCATCAGAGGACTCACACGGGGTAGAAGGACGGGTTTCTTTGGGGCC
CAGATAAGGTGGCATGTTCCCAAGGTCCCGTGAGAAGGGGCTGGTCTTTTGGACCCTGCC
GACCCGCCCATCTGCATCTTCAGGCATCTCGAGGGTCACTGCTGTGAAGAGGAAGCCGGG
AGGGTGGTTGTGAGGGGGTGGGGCACGGGCAGCACAGGATGAGCGAGGCTCTGCAAAGGG
TTTCTGTCTGCGCGAGTGAGGAGGGTGGACTTCACCCGCTCCCTCAGCGTGTTTAGCCGG
CCAGTGACTTGGGTGCCTTACCCTGTCCAGTGTCTGTCCCAACAGCTTTGGGATCCGCAG
ACTTGCTGTTACTGCTTCCTCCCTTGGGACATTCGGCAGGAACATTTGGGTTCTTGAGGC
CCTGAGACCAAAGGAGAGGGGCCAGGGCTCCTGGGAATCCAGCCAGGGGCACCAGAAGAC
GGCCAGTGAGTTGCAGCTCTCCTGAAGGCTGGCTGGGAAGCCGTGGGAAGTCCGGGGGCC
CCCCACAGTGTCCCCACTGGCCTGACAGGGGGCTCTCAAACAAAAAGGAACCAGAGACCT
AAAGGAAAGAGCGCGATGGAATTTGGAGGTCAGCCCAGGACCTGGCAGAGGAACCTGTGT
CTGGATTGGTTTACCCTTTGCAGAGATGGCGTCTTCAGAGGGTTCTGTGAATGATGGGGT
CCCCGGGATCCTGGGGGTGTTGAGAATCGTGCTGTTCCCTGTGGAAAACACAGCTGGATG
GTAATAAACCTGTTTGGGAAACATGAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATAGCACAGGAATGGCACTTTGGGGTTTTAAACCCAGGGTCCTTTCAGAGACCCAGGT
CCTTTTCTGATGGTCTTTCATATTCTATTTTGCCCTTCTGTCCATTCTGTCCCAGTTCTA
TTTTATTTGTATCCCCTTACAAGTGTGCCGAGTGCGGGAAGAGTTTCTCCCGCAGCTCAC
ACCTCGTCATACACGAGAGAACGCATGAGAAGGAGCGGCTGTGCCCCTTTTCTGAGGGCG
GGCAGGCAGTGAGCGACAGCAGCCTCTTTCTTACAAATCACGGGACCCACAAGGCAGAGA
AGAAGCTCTTTGAGTGTCTGACGTGTGGGAAAAGCTTCCGGCAGAGCATGCACCTCACCC
GGCACCAGAGGACGCACACCGGAGAGAAGCCGTACCAGTGTACCCTCTGTGGGGAAAACT
TCTCCCACAGATCCAACTTAATCAGGCACCAGAGAATCCACACGGGAGAGAAGCCCTACA
CCTGTCAGGAGTGTGGAGACAGTTTCTCCCACAGCTCCAACCGGATCCGTCACCTGAGAA
CCCACACGGGAGAGAGACCCTATAAATGTTCTCAATGCGGAGAAAGCTTTTCGAGGAGTT
CTCGCCTCCTGAGTCATCAGAGGACTCACACGGGGTAGAAGGACGGGTTTCTTTGGGGCC
CAGATAAGGTGGCATGTTCCCAAGGTCCCGTGAGAAGGGGCTGGTCTTTTGGACCCTGCC
GACCCGCCCATCTGCATCTTCAGGCATCTCGAGGGTCACTGCTGTGAAGAGGAAGCCGGG
AGGGTGGTTGTGAGGGGGTGGGGCACGGGCAGCACAGGATGAGCGAGGCTCTGCAAAGGG
TTTCTGTCTGCGCGAGTGAGGAGGGTGGACTTCACCCGCTCCCTCAGCGTGTTTAGCCGG
CCAGTGACTTGGGTGCCTTACCCTGTCCAGTGTCTGTCCCAACAGCTTTGGGATCCGCAG
ACTTGCTGTTACTGCTTCCTCCCTTGGGACATTCGGCAGGAACATTTGGGTTCTTGAGGC
CCTGAGACCAAAGGAGAGGGGCCAGGGCTCCTGGGAATCCAGCCAGGGGCACCAGAAGAC
GGCCAGTGAGTTGCAGCTCTCCTGAAGGCTGGCTGGGAAGCCGTGGGAAGTCCGGGGGCC
CCCCACAGTGTCCCCACTGGCCTGACAGGGGGCTCTCAAACAAAAAGGAACCAGAGACCT
AAAGGAAAGAGCGCGATGGAATTTGGAGGTCAGCCCAGGACCTGGCAGAGGAACCTGTGT
CTGGATTGGTTTACCCTTTGCAGAGATGGCGTCTTCAGAGGGTTCTGTGAATGATGGGGT
CCCCGGGATCCTGGGGGTGTTGAGAATCGTGCTGTTCCCTGTGGAAAACACAGCTGGATG
GTAATAAACCTGTTTGGGAAACATGAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               135-640, gnl|bosTau2|chr14 (3080502-3080000)
               

               
               135-640, gnl|Hg17|chr8 (146127767-146127265)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-640, gnl|bosTau2|chr14 (3080502-3080000)
               

               
               135-640, gnl|Hg17|chr8 (146127767-146127265)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	135-640, gnl\|bosTau2\|chr14 (3080502-3080000)
	135-640, gnl\|Hg17\|chr8 (146127767-146127265)