Ss1.1-Mixn-0004l15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGCCTGAGAGTCCAGATGTCAGCCCATTCATGCCTACAGAAGGTCTGACAGGTTCCCA GAGCCCCCTGCTGGATGGCACAGCCACCTTAATCCTGGTGAAGCGACAAGTCCCCCTGGA TTGTGTTTTGTATCGCTACGGCTCCTTTTCTCTCACCCTGGACATTGTCCAGGGTATTGA GAGTGCTGAGATCCTGCAGGCTGTGCCATCCAGTGAAGGGGATGCATTTGAGCTGACTGT GTCTTGCCAAGGCGGACTACCCAAGGAAGCCTGTATGGACATCTCATCACCAGGGTGCCA GCCCCCCGCCCAGCGGCTGTGTCAGCCCGTGTCACCCAGCCCAGCCTGCCAGCTGGTTCT GCACCAGGTGCTGAAGGGCGGCTCAGGGACCTACTGCCTCAATGTGTCTCTGGCTGACAC CAACAGCTTGGCAATGGTCAGCACCCAGCTTGTCATGCCTGGTCAAGAATCAGGCCTTGG GCAGGCTCCCCTGTTCGTGGGCATCTTGTTGGTATTGATAGCTCTGCTACTTGCATCTCT GATATACAGGCGCAGACTTATGAAGCAGGACTCGGCCCTCCCCCTCCCCCAGCTGCCGCA TGGTAGATCACCCTGGCTGCGTCTGCCCTGGGGCTTCCGCTCTTGCCCCGTTGGTGAGAA CAGCCCCCTCCTCAGTGGGCAGCAGGTCTGAGTAGGCTCACGTGCTGTCATGCTTTACCC AGGTGGACAGCAATGTCCATCTTTTCTCCCATCTTCCCATGGGGATTACCATTGCCTGAA ATAAATACTCAGAACCTTCACATAAAAGATCAATAAAAAAAATGACGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGCCTGAGAGTCCAGATGTCAGCCCATTCATGCCTACAGAAGGTCTGACAGGTTCCCA GAGCCCCCTGCTGGATGGCACAGCCACCTTAATCCTGGTGAAGCGACAAGTCCCCCTGGA TTGTGTTTTGTATCGCTACGGCTCCTTTTCTCTCACCCTGGACATTGTCCAGGGTATTGA GAGTGCTGAGATCCTGCAGGCTGTGCCATCCAGTGAAGGGGATGCATTTGAGCTGACTGT GTCTTGCCAAGGCGGACTACCCAAGGAAGCCTGTATGGACATCTCATCACCAGGGTGCCA GCCCCCCGCCCAGCGGCTGTGTCAGCCCGTGTCACCCAGCCCAGCCTGCCAGCTGGTTCT GCACCAGGTGCTGAAGGGCGGCTCAGGGACCTACTGCCTCAATGTGTCTCTGGCTGACAC CAACAGCTTGGCAATGGTCAGCACCCAGCTTGTCATGCCTGGTCAAGAATCAGGCCTTGG GCAGGCTCCCCTGTTCGTGGGCATCTTGTTGGTATTGATAGCTCTGCTACTTGCATCTCT GATATACAGGCGCAGACTTATGAAGCAGGACTCGGCCCTCCCCCTCCCCCAGCTGCCGCA TGGTAGATCACCCTGGCTGCGTCTGCCCTGGGGCTTCCGCTCTTGCCCCGTTGGTGAGAA CAGCCCCCTCCTCAGTGGGCAGCAGGTCTGAGTAGGCTCACGTGCTGTCATGCTTTACCC AGGTGGACAGCAATGTCCATCTTTTCTCCCATCTTCCCATGGGGATTACCATTGCCTGAA ATAAATACTCAGAACCTTCACATAAAAGATCAATAAAAAAAATGACGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 296-415, - strand, RNAz p=0.562469 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 296-415, - strand, RNAz p=0.562469 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 51-170, gnl|bosTau2|chr5 (33646708-33646827) | |
| 51-170, gnl|Hg17|chr12 (54636273-54636154) | |
| 51-170, gnl|Mm7|chr10 (128219516-128219635) | |
| 257-463, gnl|bosTau2|chr5 (33647266-33647472) | |
| 257-463, gnl|canFam2|chr10 (3274928-3275173) | |
| 257-463, gnl|danRer3|chr23 (48662231-48662017) | |
| 257-463, gnl|dasNov1|scaffold_64433 (5290-5535) | |
| 257-463, gnl|echTel1|scaffold_300644 (34370-34614) | |
| 257-463, gnl|fr1|chrUn (124258588-124258817) | |
| 257-463, gnl|hg17|chr12 (54635493-54635738) | |
| 257-463, gnl|Hg17|chr12 (54635719-54635513) | |
| 257-463, gnl|loxAfr1|scaffold_79491 (880-1124) | |
| 257-463, gnl|mm7|chr10 (128220595-128220350) | |
| 257-463, gnl|Mm7|chr10 (128220367-128220573) | |
| 257-463, gnl|oryCun1|scaffold_204377 (114490-114245) | |
| 257-463, gnl|panTro1|chr10 (55864947-55865192) | |
| 257-463, gnl|rheMac2|chr11 (53006860-53007105) | |
| 257-463, gnl|rn3|chr7 (2017528-2017284) | |
| 257-463, gnl|tetNig1|chr11 (7135968-7136184) | |
| 257-463, gnl|xenTro1|scaffold_85 (1853236-1853477) | |
| 542-795, gnl|bosTau2|chr5 (33648284-33648536) | |
| 542-795, gnl|Hg17|chr12 (54634407-54634160) | |
| 542-795, gnl|Mm7|chr10 (128221646-128221888) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-170, gnl|bosTau2|chr5 (33646708-33646827) | |
| 51-170, gnl|Hg17|chr12 (54636273-54636154) | |
| 51-170, gnl|Mm7|chr10 (128219516-128219635) | |
| 257-463, gnl|bosTau2|chr5 (33647266-33647472) | |
| 257-463, gnl|canFam2|chr10 (3274928-3275173) | |
| 257-463, gnl|danRer3|chr23 (48662231-48662017) | |
| 257-463, gnl|dasNov1|scaffold_64433 (5290-5535) | |
| 257-463, gnl|echTel1|scaffold_300644 (34370-34614) | |
| 257-463, gnl|fr1|chrUn (124258588-124258817) | |
| 257-463, gnl|hg17|chr12 (54635493-54635738) | |
| 257-463, gnl|Hg17|chr12 (54635719-54635513) | |
| 257-463, gnl|loxAfr1|scaffold_79491 (880-1124) | |
| 257-463, gnl|mm7|chr10 (128220595-128220350) | |
| 257-463, gnl|Mm7|chr10 (128220367-128220573) | |
| 257-463, gnl|oryCun1|scaffold_204377 (114490-114245) | |
| 257-463, gnl|panTro1|chr10 (55864947-55865192) | |
| 257-463, gnl|rheMac2|chr11 (53006860-53007105) | |
| 257-463, gnl|rn3|chr7 (2017528-2017284) | |
| 257-463, gnl|tetNig1|chr11 (7135968-7136184) | |
| 257-463, gnl|xenTro1|scaffold_85 (1853236-1853477) | |
| 542-795, gnl|bosTau2|chr5 (33648284-33648536) | |
| 542-795, gnl|Hg17|chr12 (54634407-54634160) | |
| 542-795, gnl|Mm7|chr10 (128221646-128221888) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.170503) |