Non-Coding RNA Search

Ss1.1-Mixn-0004m11.5

Sequence:


               
               GCCACAGCCTGCGCCCCGCCGGGCACCCTGGACCTTATTCCCAGACTCAGACCCCTTCTG
GGACTCTCCACCTGCCAACCCCTTCCAGGGGGGCCCTCAGGACTGCAGGGCACAGACCAA
AGACCCAGGTGCCCAGGCCCCATGGGCACCGGAGGCAGGGCCCTGAGTGGGCCGGGCTGC
TCCCCACGCTCCAGCTGCCTCTGAGGAGCCTCAGCATATACACTGGAATAGGAGCCGGGC
AGGCCTCTCTAGCTGCCCTGGTTTCGCCCAGGGACCCCGCCCCCTCGGGGGGTCAGGAAC
ACTACACTGCACAGGAAGCCTTCACACTGGAGGGGGGCTGCACCCCCACACCTGCAACCT
GTGGGTCCCCCAACTTACCCGCCCCACTGGGGCCCCACACTGTACCCAGCTGGTTAGGAG
GACCAGAGCCTGTCTCAGGGAATTGCCCCCCCTGGAGGTGCAGGGAGGAGGGGAGATGCA
GGGGAGAGGGGCCGGCCTTAGCTGTCACCAGCACTTTTGACCAAGTCCTGCTACTGTGGC
CCCTGCCCCGGGACTTAGTGCCTGGACCCCCCACCCTGGGGGTCATCTGGGGCTGGGGCT
CTCTGAGTGCCTTCCTGCTGCCCTGGCCATGGTTGGGGCCATGGCCTCGGGATCCGATGA
AGCCAAATAAACTCCCCAAGCACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACAGCCTGCGCCCCGCCGGGCACCCTGGACCTTATTCCCAGACTCAGACCCCTTCTG
GGACTCTCCACCTGCCAACCCCTTCCAGGGGGGCCCTCAGGACTGCAGGGCACAGACCAA
AGACCCAGGTGCCCAGGCCCCATGGGCACCGGAGGCAGGGCCCTGAGTGGGCCGGGCTGC
TCCCCACGCTCCAGCTGCCTCTGAGGAGCCTCAGCATATACACTGGAATAGGAGCCGGGC
AGGCCTCTCTAGCTGCCCTGGTTTCGCCCAGGGACCCCGCCCCCTCGGGGGGTCAGGAAC
ACTACACTGCACAGGAAGCCTTCACACTGGAGGGGGGCTGCACCCCCACACCTGCAACCT
GTGGGTCCCCCAACTTACCCGCCCCACTGGGGCCCCACACTGTACCCAGCTGGTTAGGAG
GACCAGAGCCTGTCTCAGGGAATTGCCCCCCCTGGAGGTGCAGGGAGGAGGGGAGATGCA
GGGGAGAGGGGCCGGCCTTAGCTGTCACCAGCACTTTTGACCAAGTCCTGCTACTGTGGC
CCCTGCCCCGGGACTTAGTGCCTGGACCCCCCACCCTGGGGGTCATCTGGGGCTGGGGCT
CTCTGAGTGCCTTCCTGCTGCCCTGGCCATGGTTGGGGCCATGGCCTCGGGATCCGATGA
AGCCAAATAAACTCCCCAAGCACAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q80YF1_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80YF1_RAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-159, - strand, RNAz p=0.972903
               

               
               278-427, - strand, RNAz p=0.915841
               

               
               467-681, - strand, RNAz p=0.938738

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.972903
               

               
               278-427, - strand, RNAz p=0.915841
               

               
               467-681, - strand, RNAz p=0.938738

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-681, gnl|bosTau2|chr29 (37854294-37854974)
               

               
               1-681, gnl|Hg17|chr11 (65122503-65121814)
               

               
               1-681, gnl|Mm7|chr19 (5596985-5597659)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-681, gnl|bosTau2|chr29 (37854294-37854974)
               

               
               1-681, gnl|Hg17|chr11 (65122503-65121814)
               

               
               1-681, gnl|Mm7|chr19 (5596985-5597659)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	1-159, - strand, RNAz p=0.972903
	278-427, - strand, RNAz p=0.915841
	467-681, - strand, RNAz p=0.938738

	1-681, gnl\|bosTau2\|chr29 (37854294-37854974)
	1-681, gnl\|Hg17\|chr11 (65122503-65121814)
	1-681, gnl\|Mm7\|chr19 (5596985-5597659)

	ill (0.175593)
	fhi (0.169578)
	cag (0.151194)
	cly (0.120642)
	med (0.116252)