Ss1.1-Mixn-0004p03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACCGCTCCCCCTCCCACACCTACCCCGCCCCCTCCCCGCCTTTTCCGCCCTCCTGTCCC CCTCCCTCGGCCCGCCGCCGCTGCTCCAGATGAGGTGATGGCAACGGCCAACTTCGGCAA GATCCAGATCGGGATTTACGTGGAGATCAAGCGGAGCGATGGCCGAATACATCAAGCAAT GGTAACATCTTTAAATGAAGATAATGAAAGTGTAACTGTTGAATGGATAGAAAATGGAGA TACAAAAGGCAAAGAGATTGACCTGGAGAGTATCTTTTCACTTAACCCTGACCTTGTACC AGATGAAGAAATTGAGCCCAGTCCAGAGACACCCCCACCTCCAACATCCTCAGCTAAAGT AAACAAAATTGTAAAGAATCGACGGACTGTGGCTTCTGTTAAGAATGATCCTCCTCCAAG AGATAATAGAGTGGTTGGTTCTGCACGTGCACGGCCTAGTCAGCTTCCTGAACAGTCTTC CTCTGCACAACAGAATGGTAGTGTTTCAGATATATCTCCAGTTCAAGCTGCAAAAAAGGA ATTTGGACCCCCTTCACGTAGAAAATCTAATTGTGTGAAAGAAGTAGAGAAGTTACAAGA AAAACGAGAAAAAAGGAGACTACAACAGCAAGAACTTAGAGAAAAAAGAGCCCAGGATGT TGATGCTACAAACCCAAATTATGAAATTATGTGTATGATCAGAGACTTCAGAGGAAGTTT GGATTATAGACCATTAACAACAGCAGATCCTGTAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACCGCTCCCCCTCCCACACCTACCCCGCCCCCTCCCCGCCTTTTCCGCCCTCCTGTCCC CCTCCCTCGGCCCGCCGCCGCTGCTCCAGATGAGGTGATGGCAACGGCCAACTTCGGCAA GATCCAGATCGGGATTTACGTGGAGATCAAGCGGAGCGATGGCCGAATACATCAAGCAAT GGTAACATCTTTAAATGAAGATAATGAAAGTGTAACTGTTGAATGGATAGAAAATGGAGA TACAAAAGGCAAAGAGATTGACCTGGAGAGTATCTTTTCACTTAACCCTGACCTTGTACC AGATGAAGAAATTGAGCCCAGTCCAGAGACACCCCCACCTCCAACATCCTCAGCTAAAGT AAACAAAATTGTAAAGAATCGACGGACTGTGGCTTCTGTTAAGAATGATCCTCCTCCAAG AGATAATAGAGTGGTTGGTTCTGCACGTGCACGGCCTAGTCAGCTTCCTGAACAGTCTTC CTCTGCACAACAGAATGGTAGTGTTTCAGATATATCTCCAGTTCAAGCTGCAAAAAAGGA ATTTGGACCCCCTTCACGTAGAAAATCTAATTGTGTGAAAGAAGTAGAGAAGTTACAAGA AAAACGAGAAAAAAGGAGACTACAACAGCAAGAACTTAGAGAAAAAAGAGCCCAGGATGT TGATGCTACAAACCCAAATTATGAAATTATGTGTATGATCAGAGACTTCAGAGGAAGTTT GGATTATAGACCATTAACAACAGCAGATCCTGTAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 1-162, gnl|bosTau2|chr20 (4347185-4347024) | |
| 1-162, gnl|Hg17|chr5 (61637960-61638121) | |
| 1-162, gnl|Mm7|chr13 (104151389-104151250) | |
| 251-376, gnl|bosTau2|chr20 (4308482-4308357) | |
| 251-376, gnl|canFam2|chr2 (51549124-51549274) | |
| 251-376, gnl|danRer3|chr8 (4678326-4678477) | |
| 251-376, gnl|dasNov1|scaffold_14929 (1462-1581) | |
| 251-376, gnl|echTel1|scaffold_294063 (3194-3048) | |
| 251-376, gnl|fr1|chrUn (92184019-92183872) | |
| 251-376, gnl|galGal2|chrZ (2803134-2803275) | |
| 251-376, gnl|hg17|chr5 (61679626-61679778) | |
| 251-376, gnl|Hg17|chr5 (61679626-61679751) | |
| 251-376, gnl|loxAfr1|scaffold_9925 (16389-16536) | |
| 251-376, gnl|mm7|chr13 (104122526-104122392) | |
| 251-376, gnl|Mm7|chr13 (104122524-104122402) | |
| 251-376, gnl|monDom2|scaffold_27 (26670653-26670810) | |
| 251-376, gnl|oryCun1|scaffold_212940 (88745-88597) | |
| 251-376, gnl|panTro1|chr4 (54264896-54264744) | |
| 251-376, gnl|rheMac2|chr6 (60081058-60081210) | |
| 251-376, gnl|rn3|chr2 (38029524-38029390) | |
| 251-376, gnl|tetNig1|chr12 (2896349-2896482) | |
| 251-376, gnl|xenTro1|scaffold_457 (506889-506757) | |
| 430-554, gnl|bosTau2|chr20 (4305550-4305426) | |
| 430-554, gnl|canFam2|chr2 (51553760-51553861) | |
| 430-554, gnl|dasNov1|scaffold_118488 (946-846) | |
| 430-554, gnl|echTel1|scaffold_260108 (1421-1318) | |
| 430-554, gnl|fr1|chrUn (92182469-92182393) | |
| 430-554, gnl|galGal2|chrZ (2810656-2810752) | |
| 430-554, gnl|hg17|chr5 (61684159-61684262) | |
| 430-554, gnl|Hg17|chr5 (61684170-61684294) | |
| 430-554, gnl|loxAfr1|scaffold_9925 (21607-21710) | |
| 430-554, gnl|mm7|chr13 (104117324-104117226) | |
| 430-554, gnl|Mm7|chr13 (104117316-104117192) | |
| 430-554, gnl|monDom2|scaffold_27 (26675705-26675808) | |
| 430-554, gnl|oryCun1|scaffold_212940 (86357-86256) | |
| 430-554, gnl|panTro1|chr4 (54259877-54259774) | |
| 430-554, gnl|rheMac2|chr6 (60085866-60085969) | |
| 430-554, gnl|rn3|chr2 (38023948-38023850) | |
| 430-554, gnl|xenTro1|scaffold_457 (504777-504674) | |
| 653-756, gnl|bosTau2|chr20 (4302924-4302821) | |
| 653-756, gnl|canFam2|chr2 (51556620-51556522) | |
| 653-756, gnl|canFam2|chr2 (51556505-51556615) | |
| 653-756, gnl|danRer3|chr8 (4683073-4682964) | |
| 653-756, gnl|danRer3|chr8 (4682952-4683058) | |
| 653-756, gnl|dasNov1|scaffold_14929 (1878-1785) | |
| 653-756, gnl|dasNov1|scaffold_14929 (1786-1878) | |
| 653-756, gnl|echTel1|scaffold_279265 (91282-91179) | |
| 653-756, gnl|echTel1|scaffold_323864 (82282-82178) | |
| 653-756, gnl|fr1|chrUn (92181014-92181102) | |
| 653-756, gnl|fr1|chrUn (92181117-92181008) | |
| 653-756, gnl|galGal2|chrZ (2813477-2813374) | |
| 653-756, gnl|galGal2|chrZ (2813357-2813468) | |
| 653-756, gnl|hg17|chr5 (61686726-61686836) | |
| 653-756, gnl|Hg17|chr5 (61686740-61686843) | |
| 653-756, gnl|hg17|chrX (126589562-126589664) | |
| 653-756, gnl|loxAfr1|scaffold_9925 (28656-28557) | |
| 653-756, gnl|loxAfr1|scaffold_9925 (28541-28651) | |
| 653-756, gnl|mm7|chr13 (104114302-104114401) | |
| 653-756, gnl|mm7|chr13 (104114420-104114307) | |
| 653-756, gnl|Mm7|chr13 (104114401-104114298) | |
| 653-756, gnl|monDom2|scaffold_27 (26685668-26685778) | |
| 653-756, gnl|oryCun1|scaffold_137766 (3046-3148) | |
| 653-756, gnl|oryCun1|scaffold_212940 (83113-83001) | |
| 653-756, gnl|panTro1|chr4 (54231557-54231447) | |
| 653-756, gnl|panTro1|chrX (130762685-130762787) | |
| 653-756, gnl|rheMac2|chr6 (60088743-60088853) | |
| 653-756, gnl|rheMac2|chrX (125925229-125925331) | |
| 653-756, gnl|rn3|chr17 (11008601-11008704) | |
| 653-756, gnl|rn3|chr2 (38021016-38020903) | |
| 653-756, gnl|tetNig1|chr12 (2898958-2898881) | |
| 653-756, gnl|tetNig1|chr12 (2898881-2898975) | |
| 653-756, gnl|xenTro1|scaffold_457 (502126-502226) | |
| 653-756, gnl|xenTro1|scaffold_457 (502245-502135) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-162, gnl|bosTau2|chr20 (4347185-4347024) | |
| 1-162, gnl|Hg17|chr5 (61637960-61638121) | |
| 1-162, gnl|Mm7|chr13 (104151389-104151250) | |
| 251-376, gnl|bosTau2|chr20 (4308482-4308357) | |
| 251-376, gnl|canFam2|chr2 (51549124-51549274) | |
| 251-376, gnl|danRer3|chr8 (4678326-4678477) | |
| 251-376, gnl|dasNov1|scaffold_14929 (1462-1581) | |
| 251-376, gnl|echTel1|scaffold_294063 (3194-3048) | |
| 251-376, gnl|fr1|chrUn (92184019-92183872) | |
| 251-376, gnl|galGal2|chrZ (2803134-2803275) | |
| 251-376, gnl|hg17|chr5 (61679626-61679778) | |
| 251-376, gnl|Hg17|chr5 (61679626-61679751) | |
| 251-376, gnl|loxAfr1|scaffold_9925 (16389-16536) | |
| 251-376, gnl|mm7|chr13 (104122526-104122392) | |
| 251-376, gnl|Mm7|chr13 (104122524-104122402) | |
| 251-376, gnl|monDom2|scaffold_27 (26670653-26670810) | |
| 251-376, gnl|oryCun1|scaffold_212940 (88745-88597) | |
| 251-376, gnl|panTro1|chr4 (54264896-54264744) | |
| 251-376, gnl|rheMac2|chr6 (60081058-60081210) | |
| 251-376, gnl|rn3|chr2 (38029524-38029390) | |
| 251-376, gnl|tetNig1|chr12 (2896349-2896482) | |
| 251-376, gnl|xenTro1|scaffold_457 (506889-506757) | |
| 430-554, gnl|bosTau2|chr20 (4305550-4305426) | |
| 430-554, gnl|canFam2|chr2 (51553760-51553861) | |
| 430-554, gnl|dasNov1|scaffold_118488 (946-846) | |
| 430-554, gnl|echTel1|scaffold_260108 (1421-1318) | |
| 430-554, gnl|fr1|chrUn (92182469-92182393) | |
| 430-554, gnl|galGal2|chrZ (2810656-2810752) | |
| 430-554, gnl|hg17|chr5 (61684159-61684262) | |
| 430-554, gnl|Hg17|chr5 (61684170-61684294) | |
| 430-554, gnl|loxAfr1|scaffold_9925 (21607-21710) | |
| 430-554, gnl|mm7|chr13 (104117324-104117226) | |
| 430-554, gnl|Mm7|chr13 (104117316-104117192) | |
| 430-554, gnl|monDom2|scaffold_27 (26675705-26675808) | |
| 430-554, gnl|oryCun1|scaffold_212940 (86357-86256) | |
| 430-554, gnl|panTro1|chr4 (54259877-54259774) | |
| 430-554, gnl|rheMac2|chr6 (60085866-60085969) | |
| 430-554, gnl|rn3|chr2 (38023948-38023850) | |
| 430-554, gnl|xenTro1|scaffold_457 (504777-504674) | |
| 653-756, gnl|bosTau2|chr20 (4302924-4302821) | |
| 653-756, gnl|canFam2|chr2 (51556620-51556522) | |
| 653-756, gnl|canFam2|chr2 (51556505-51556615) | |
| 653-756, gnl|danRer3|chr8 (4683073-4682964) | |
| 653-756, gnl|danRer3|chr8 (4682952-4683058) | |
| 653-756, gnl|dasNov1|scaffold_14929 (1878-1785) | |
| 653-756, gnl|dasNov1|scaffold_14929 (1786-1878) | |
| 653-756, gnl|echTel1|scaffold_279265 (91282-91179) | |
| 653-756, gnl|echTel1|scaffold_323864 (82282-82178) | |
| 653-756, gnl|fr1|chrUn (92181014-92181102) | |
| 653-756, gnl|fr1|chrUn (92181117-92181008) | |
| 653-756, gnl|galGal2|chrZ (2813477-2813374) | |
| 653-756, gnl|galGal2|chrZ (2813357-2813468) | |
| 653-756, gnl|hg17|chr5 (61686726-61686836) | |
| 653-756, gnl|Hg17|chr5 (61686740-61686843) | |
| 653-756, gnl|hg17|chrX (126589562-126589664) | |
| 653-756, gnl|loxAfr1|scaffold_9925 (28656-28557) | |
| 653-756, gnl|loxAfr1|scaffold_9925 (28541-28651) | |
| 653-756, gnl|mm7|chr13 (104114302-104114401) | |
| 653-756, gnl|mm7|chr13 (104114420-104114307) | |
| 653-756, gnl|Mm7|chr13 (104114401-104114298) | |
| 653-756, gnl|monDom2|scaffold_27 (26685668-26685778) | |
| 653-756, gnl|oryCun1|scaffold_137766 (3046-3148) | |
| 653-756, gnl|oryCun1|scaffold_212940 (83113-83001) | |
| 653-756, gnl|panTro1|chr4 (54231557-54231447) | |
| 653-756, gnl|panTro1|chrX (130762685-130762787) | |
| 653-756, gnl|rheMac2|chr6 (60088743-60088853) | |
| 653-756, gnl|rheMac2|chrX (125925229-125925331) | |
| 653-756, gnl|rn3|chr17 (11008601-11008704) | |
| 653-756, gnl|rn3|chr2 (38021016-38020903) | |
| 653-756, gnl|tetNig1|chr12 (2898958-2898881) | |
| 653-756, gnl|tetNig1|chr12 (2898881-2898975) | |
| 653-756, gnl|xenTro1|scaffold_457 (502126-502226) | |
| 653-756, gnl|xenTro1|scaffold_457 (502245-502135) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ssp (0.13552) |