Non-Coding RNA Search

Ss1.1-Mixn-0004p17.5

Sequence:


               
               GGGCAGGCAGGGTCCCTGGGCTGGGACGCGGGCCTGGGGTGGGCCAGCAGTGCTTCCTCT
CGGCTGTGCCACCCTGGGCAAGTCCCTTCTTCTCTCCGGGTGACACAGGAGGCTGAGACA
ATCTCTTCCCTTACATCCATTTTAGATCAAAGTCCCCATGGCTCTGTGGAGTCCCAGGAG
AGGCCATGGAGTGTCCCTGGCACCCTGGGGCAGAGAGCTGAGGACGCTGAGTCTCTGGGT
GGCTCCCTGAGTGTACCCCTTGGCCAGAGCCCCTCCTCTACCCCTGCAGCCAGAGGGGCA
CCTGGCCTCTCTCCTCTTCAAGGCCATGTCCGCCCGTGCTCCGGGGCTTGGGAGACCCCA
CAGTGCCAGGCCTCTGGGGTCACCCCAGCTGCCAGCTTCTCCCTTCTCTGTTTTATTCTG
GGAGTGTCGTGGGTGGGGGGAGGGGGGCCACCTGCCTTACCTATTCTGAGTTGCCTTTAG
AGAGATGCGTTTTTCTAGGACTCTGTGCAACTGTTGTATATGGTCCCGTGGGCTGACCGC
TTTGTACATGAGAATAAATCTATTTCTTTCTACCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGGCAGGGTCCCTGGGCTGGGACGCGGGCCTGGGGTGGGCCAGCAGTGCTTCCTCT
CGGCTGTGCCACCCTGGGCAAGTCCCTTCTTCTCTCCGGGTGACACAGGAGGCTGAGACA
ATCTCTTCCCTTACATCCATTTTAGATCAAAGTCCCCATGGCTCTGTGGAGTCCCAGGAG
AGGCCATGGAGTGTCCCTGGCACCCTGGGGCAGAGAGCTGAGGACGCTGAGTCTCTGGGT
GGCTCCCTGAGTGTACCCCTTGGCCAGAGCCCCTCCTCTACCCCTGCAGCCAGAGGGGCA
CCTGGCCTCTCTCCTCTTCAAGGCCATGTCCGCCCGTGCTCCGGGGCTTGGGAGACCCCA
CAGTGCCAGGCCTCTGGGGTCACCCCAGCTGCCAGCTTCTCCCTTCTCTGTTTTATTCTG
GGAGTGTCGTGGGTGGGGGGAGGGGGGCCACCTGCCTTACCTATTCTGAGTTGCCTTTAG
AGAGATGCGTTTTTCTAGGACTCTGTGCAACTGTTGTATATGGTCCCGTGGGCTGACCGC
TTTGTACATGAGAATAAATCTATTTCTTTCTACCAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               227-405, - strand, RNAz p=0.99892

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-405, - strand, RNAz p=0.99892

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-576, gnl|bosTau2|chr15 (29498088-29498673)
               

               
               5-576, gnl|Hg17|chr11 (71965435-71964832)
               

               
               5-576, gnl|Mm7|chr7 (97558508-97559065)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-576, gnl|bosTau2|chr15 (29498088-29498673)
               

               
               5-576, gnl|Hg17|chr11 (71965435-71964832)
               

               
               5-576, gnl|Mm7|chr7 (97558508-97559065)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               pty (0.142714)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               eje (0.0988338)

	5-576, gnl\|bosTau2\|chr15 (29498088-29498673)
	5-576, gnl\|Hg17\|chr11 (71965435-71964832)
	5-576, gnl\|Mm7\|chr7 (97558508-97559065)