Non-Coding RNA Search

Ss1.1-Mixn-0005a11.5

Sequence:


               
               AAAGACTAGAGAAAACCTAGCAGAGGAAAGGGATCCGTGTTGGTCTGAGAGAGTTACACA
CACAACCTATTTTAGACAGTTCCGTGAGCCTGCAGCCACCCTGCAGTTAAATTTCCCAGT
AACTGCTCTTTCAAAGTCTAGTGATTGCTGATTGCATCTTTGCCTTTGTGAAAAGCCATT
GTACATTTTAAGACAGGTCGTAAGACAACTATCCAAGTGAACACGGAAAAAAAGACAGGA
GGACAGGATGGATTGAACACAGGCTTAGGGCAGCCAACGCCAAGGCTGCCCTCCAGCCGC
CAGAGGGAGGGGTTCCTGAAAACAGTGGTTTGGGTTGGCAGCTAGCAAGTTACTCCTATC
AGATGTACTGTGCACTTTAACCTAACTTAAACTATATTTTAAGATTTTCCTGTACTGCAC
AAATACCTGTTTTCTCAAATAGAAGAATGATGTAAAGAAGAAAGACGTGTGAACAAGGAG
GGTCTTGGATGTGAACAGCAAAGGTGATGACAGCAGTAGGAGTTCAGATGACTGCACCTT
GATGGGCATGGAGAATGCAGGGTCCTGAAAGATTTTTTTTTTAACCTGTGTATATAGCAA
CATGAAGCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGACTAGAGAAAACCTAGCAGAGGAAAGGGATCCGTGTTGGTCTGAGAGAGTTACACA
CACAACCTATTTTAGACAGTTCCGTGAGCCTGCAGCCACCCTGCAGTTAAATTTCCCAGT
AACTGCTCTTTCAAAGTCTAGTGATTGCTGATTGCATCTTTGCCTTTGTGAAAAGCCATT
GTACATTTTAAGACAGGTCGTAAGACAACTATCCAAGTGAACACGGAAAAAAAGACAGGA
GGACAGGATGGATTGAACACAGGCTTAGGGCAGCCAACGCCAAGGCTGCCCTCCAGCCGC
CAGAGGGAGGGGTTCCTGAAAACAGTGGTTTGGGTTGGCAGCTAGCAAGTTACTCCTATC
AGATGTACTGTGCACTTTAACCTAACTTAAACTATATTTTAAGATTTTCCTGTACTGCAC
AAATACCTGTTTTCTCAAATAGAAGAATGATGTAAAGAAGAAAGACGTGTGAACAAGGAG
GGTCTTGGATGTGAACAGCAAAGGTGATGACAGCAGTAGGAGTTCAGATGACTGCACCTT
GATGGGCATGGAGAATGCAGGGTCCTGAAAGATTTTTTTTTTAACCTGTGTATATAGCAA
CATGAAGCTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               245-344, - strand, RNAz p=0.68477

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-344, - strand, RNAz p=0.68477

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-612, gnl|bosTau2|chr12 (7378196-7378837)
               

               
               1-612, gnl|canFam2|chr22 (7519349-7518544)
               

               
               1-612, gnl|dasNov1|scaffold_5513 (22231-22847)
               

               
               1-612, gnl|echTel1|scaffold_317435 (4100-4806)
               

               
               1-612, gnl|galGal2|chr1 (160472354-160473154)
               

               
               1-612, gnl|hg17|chr13 (46224111-46224895)
               

               
               1-612, gnl|Hg17|chr13 (46224233-46224875)
               

               
               1-612, gnl|loxAfr1|scaffold_763 (143350-144157)
               

               
               1-612, gnl|mm7|chr14 (69437426-69436649)
               

               
               1-612, gnl|Mm7|chr14 (69437293-69436667)
               

               
               1-612, gnl|monDom2|scaffold_15 (60950312-60949392)
               

               
               1-612, gnl|oryCun1|scaffold_176241 (12024-11231)
               

               
               1-612, gnl|panTro1|chr14_random (12257715-12258511)
               

               
               1-612, gnl|rheMac2|chr17 (25577925-25578721)
               

               
               1-612, gnl|rn3|chr15 (55600472-55599748)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr12 (7378196-7378837)
               

               
               1-612, gnl|canFam2|chr22 (7519349-7518544)
               

               
               1-612, gnl|dasNov1|scaffold_5513 (22231-22847)
               

               
               1-612, gnl|echTel1|scaffold_317435 (4100-4806)
               

               
               1-612, gnl|galGal2|chr1 (160472354-160473154)
               

               
               1-612, gnl|hg17|chr13 (46224111-46224895)
               

               
               1-612, gnl|Hg17|chr13 (46224233-46224875)
               

               
               1-612, gnl|loxAfr1|scaffold_763 (143350-144157)
               

               
               1-612, gnl|mm7|chr14 (69437426-69436649)
               

               
               1-612, gnl|Mm7|chr14 (69437293-69436667)
               

               
               1-612, gnl|monDom2|scaffold_15 (60950312-60949392)
               

               
               1-612, gnl|oryCun1|scaffold_176241 (12024-11231)
               

               
               1-612, gnl|panTro1|chr14_random (12257715-12258511)
               

               
               1-612, gnl|rheMac2|chr17 (25577925-25578721)
               

               
               1-612, gnl|rn3|chr15 (55600472-55599748)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               vin (0.332557)
               

               
               ski (0.29347)
               

               
               fcc (0.197785)
               

               
               bla (0.124347)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               fcc (0.197785)
               

               
               bla (0.124347)
               

               
               med (0.116252)

	1-612, gnl\|bosTau2\|chr12 (7378196-7378837)
	1-612, gnl\|canFam2\|chr22 (7519349-7518544)
	1-612, gnl\|dasNov1\|scaffold_5513 (22231-22847)
	1-612, gnl\|echTel1\|scaffold_317435 (4100-4806)
	1-612, gnl\|galGal2\|chr1 (160472354-160473154)
	1-612, gnl\|hg17\|chr13 (46224111-46224895)
	1-612, gnl\|Hg17\|chr13 (46224233-46224875)
	1-612, gnl\|loxAfr1\|scaffold_763 (143350-144157)
	1-612, gnl\|mm7\|chr14 (69437426-69436649)
	1-612, gnl\|Mm7\|chr14 (69437293-69436667)
	1-612, gnl\|monDom2\|scaffold_15 (60950312-60949392)
	1-612, gnl\|oryCun1\|scaffold_176241 (12024-11231)
	1-612, gnl\|panTro1\|chr14_random (12257715-12258511)
	1-612, gnl\|rheMac2\|chr17 (25577925-25578721)
	1-612, gnl\|rn3\|chr15 (55600472-55599748)

	vin (0.332557)
	ski (0.29347)
	fcc (0.197785)
	bla (0.124347)
	med (0.116252)