Ss1.1-Mixn-0005c11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGGTTGGTAAGGTCGGGCCATGGTGGGGCAGAGGTTGGGAAGATGGCGTGGCGTGGCT GGGCGTGTAGAGGCTGGGGTTGCAGACATGCATGGGCTCCACCGGCAGGCAGCCGCAGCT GCGAGGAGCTCACCGCGGGCCTGGCCCCGCCGCAGCTACTCGGGCGCAGGTTTAACTTTT TTATTCAGCAAAAATGTGGATTCAGAAAAGCACCCAGAAAGGTTGAACCTCGAAGATCAG ACACAGGAAGAAGTAGTGAAGCATATAAGAGAAGTGCTTTGATTCCTCCTGTAGAAGAAA CAGCCTTTTATCCTTCTCCCTATCCTATAAGAACTCTTGTAAAGCCTTTGTTTTTTACCG TTGGGTTTACAGGTTGTGCATTTGGATCGGCTGCTATTTGGCAATATGAATCACTGAAAT CCAGGGTCCAGAGTTATTTTGATGGTATAAAAGCTGATTGGTTGGATAGCATAAGACCAC AAAAGGAAGGAGACTTCAGAAAGGAGATTAACAAGTGGTGGAATAACCTAAGTGATGGCC AGCGGACTGTGACAGGTATCATAGCTGCAAATGTTTTTGTATTTTGTTTGTGGAGAGTAC CTTCTCTACAGCGGACAATGATCAGATATTTCACATCCAATCCAGCCTCAAAGGTCCTTT GCGCTCCAATGTTGCTGTCAACGTTCAGTCATTTTTCCTTGTTTCACATGGCAGCTAATA TGTATGTTTTGTGGAGCTTCTCCTCCAGCATAGTGAACATTCTGGGTCAAGAGCAGTTCA TGGCAGTGTACTTATCTGCAGGTGTTATTTCCAATTTTGTCAGTTATGTGTGTAAAGTTG CCACAGGAAGATATGGACCATCACTTGGTGCATCGGGCGCAATCATGACCGTCCTGGCAG CTGTCTGCACCAAGATCCCAGAGGGGAGGCTCGCCATTATCTTCCTTCCAATGTTCACGT TCACCGCAGGGAATGCCCTAAAAGCCATTATTGCCATGGATACAGCAGGAATGATCCTGG GATGGAAATTTTTTGATCATGCAGCACATCTTGGGGGAGCTCTCTTTGGAATATGGTATA TTACTTACGGTCATGAACTCATTTGGAAGAACAGGGAACCTCTAGTGAAAATTTGGCATG AAATGAGGACTAACGGCCCCAGGAAAGGAGGTGGCTCTAAGTAAAACTAGGGTTGGACAA CACCGGTGCCTCAGGTCCATGCTGGCTGAAGCCCCAGGAACACATCGGCCCTGGAGTGTC CACATCTTTGCTCCTGCCTGGAAGACACTCAGTATTTAGCTTCTGAGTATTTTAAACTAT GTCCCCAGTACATGTCTCATTAAAAAGTGAATTATGACAAAGTTGTGAAATAAAGGTTTA TATCTCTAGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGGTTGGTAAGGTCGGGCCATGGTGGGGCAGAGGTTGGGAAGATGGCGTGGCGTGGCT GGGCGTGTAGAGGCTGGGGTTGCAGACATGCATGGGCTCCACCGGCAGGCAGCCGCAGCT GCGAGGAGCTCACCGCGGGCCTGGCCCCGCCGCAGCTACTCGGGCGCAGGTTTAACTTTT TTATTCAGCAAAAATGTGGATTCAGAAAAGCACCCAGAAAGGTTGAACCTCGAAGATCAG ACACAGGAAGAAGTAGTGAAGCATATAAGAGAAGTGCTTTGATTCCTCCTGTAGAAGAAA CAGCCTTTTATCCTTCTCCCTATCCTATAAGAACTCTTGTAAAGCCTTTGTTTTTTACCG TTGGGTTTACAGGTTGTGCATTTGGATCGGCTGCTATTTGGCAATATGAATCACTGAAAT CCAGGGTCCAGAGTTATTTTGATGGTATAAAAGCTGATTGGTTGGATAGCATAAGACCAC AAAAGGAAGGAGACTTCAGAAAGGAGATTAACAAGTGGTGGAATAACCTAAGTGATGGCC AGCGGACTGTGACAGGTATCATAGCTGCAAATGTTTTTGTATTTTGTTTGTGGAGAGTAC CTTCTCTACAGCGGACAATGATCAGATATTTCACATCCAATCCAGCCTCAAAGGTCCTTT GCGCTCCAATGTTGCTGTCAACGTTCAGTCATTTTTCCTTGTTTCACATGGCAGCTAATA TGTATGTTTTGTGGAGCTTCTCCTCCAGCATAGTGAACATTCTGGGTCAAGAGCAGTTCA TGGCAGTGTACTTATCTGCAGGTGTTATTTCCAATTTTGTCAGTTATGTGTGTAAAGTTG CCACAGGAAGATATGGACCATCACTTGGTGCATCGGGCGCAATCATGACCGTCCTGGCAG CTGTCTGCACCAAGATCCCAGAGGGGAGGCTCGCCATTATCTTCCTTCCAATGTTCACGT TCACCGCAGGGAATGCCCTAAAAGCCATTATTGCCATGGATACAGCAGGAATGATCCTGG GATGGAAATTTTTTGATCATGCAGCACATCTTGGGGGAGCTCTCTTTGGAATATGGTATA TTACTTACGGTCATGAACTCATTTGGAAGAACAGGGAACCTCTAGTGAAAATTTGGCATG AAATGAGGACTAACGGCCCCAGGAAAGGAGGTGGCTCTAAGTAAAACTAGGGTTGGACAA CACCGGTGCCTCAGGTCCATGCTGGCTGAAGCCCCAGGAACACATCGGCCCTGGAGTGTC CACATCTTTGCTCCTGCCTGGAAGACACTCAGTATTTAGCTTCTGAGTATTTTAAACTAT GTCCCCAGTACATGTCTCATTAAAAAGTGAATTATGACAAAGTTGTGAAATAAAGGTTTA TATCTCTAGTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 168-372, gnl|bosTau2|chr1 (51514322-51514124) | |
| 168-372, gnl|Hg17|chr3 (185068552-185068180) | |
| 168-372, gnl|Mm7|chr16 (19848349-19848145) | |
| 169-270, gnl|bosTau2|chr18 (7665223-7665324) | |
| 652-803, gnl|bosTau2|chr1 (51973167-51973016) | |
| 652-803, gnl|Hg17|chr3 (185042937-185042786) | |
| 652-803, gnl|Mm7|chrX (131264681-131264826) | |
| 869-975, gnl|bosTau2|chr1 (51957015-51956908) | |
| 869-975, gnl|canFam2|chr34 (19801849-19801747) | |
| 869-975, gnl|canFam2|chr34 (19801845-19801747) | |
| 869-975, gnl|danRer3|chrUn (25134160-25133968) | |
| 869-975, gnl|danRer3|chrUn (25134154-25133968) | |
| 869-975, gnl|dasNov1|scaffold_61 (348172-348274) | |
| 869-975, gnl|dasNov1|scaffold_61 (348176-348274) | |
| 869-975, gnl|echTel1|scaffold_308196 (45481-45582) | |
| 869-975, gnl|echTel1|scaffold_308196 (45485-45583) | |
| 869-975, gnl|fr1|chrUn (271180302-271180111) | |
| 869-975, gnl|fr1|chrUn (271180301-271180111) | |
| 869-975, gnl|hg17|chr3 (121231093-121231196) | |
| 869-975, gnl|Hg17|chr3 (185034320-185034213) | |
| 869-975, gnl|hg17|chr6 (143705903-143706004) | |
| 869-975, gnl|loxAfr1|scaffold_9096 (39244-39143) | |
| 869-975, gnl|loxAfr1|scaffold_9096 (39244-39142) | |
| 869-975, gnl|mm7|chr2 (3604392-3604494) | |
| 869-975, gnl|mm7|chr2 (3604392-3604494) | |
| 869-975, gnl|Mm7|chr2 (3604391-3604493) | |
| 869-975, gnl|oryCun1|scaffold_135672 (5918-5816) | |
| 869-975, gnl|oryCun1|scaffold_135672 (5918-5816) | |
| 869-975, gnl|panTro1|chr2 (122953798-122953900) | |
| 869-975, gnl|panTro1|chr5 (146620056-146620157) | |
| 869-975, gnl|rheMac2|chr2 (40060650-40060752) | |
| 869-975, gnl|rheMac2|chr4 (120346864-120346763) | |
| 869-975, gnl|rn3|chr6 (34511578-34511680) | |
| 869-975, gnl|rn3|chr6 (34511578-34511680) | |
| 869-975, gnl|tetNig1|chrUn_random (135804143-135804327) | |
| 869-975, gnl|tetNig1|chrUn_random (135804144-135804327) | |
| 869-975, gnl|xenTro1|scaffold_566 (704530-704428) | |
| 1219-1392, gnl|bosTau2|chr14 (4402351-4402181) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 168-372, gnl|bosTau2|chr1 (51514322-51514124) | |
| 168-372, gnl|Hg17|chr3 (185068552-185068180) | |
| 168-372, gnl|Mm7|chr16 (19848349-19848145) | |
| 169-270, gnl|bosTau2|chr18 (7665223-7665324) | |
| 652-803, gnl|bosTau2|chr1 (51973167-51973016) | |
| 652-803, gnl|Hg17|chr3 (185042937-185042786) | |
| 652-803, gnl|Mm7|chrX (131264681-131264826) | |
| 869-975, gnl|bosTau2|chr1 (51957015-51956908) | |
| 869-975, gnl|canFam2|chr34 (19801849-19801747) | |
| 869-975, gnl|canFam2|chr34 (19801845-19801747) | |
| 869-975, gnl|danRer3|chrUn (25134160-25133968) | |
| 869-975, gnl|danRer3|chrUn (25134154-25133968) | |
| 869-975, gnl|dasNov1|scaffold_61 (348172-348274) | |
| 869-975, gnl|dasNov1|scaffold_61 (348176-348274) | |
| 869-975, gnl|echTel1|scaffold_308196 (45481-45582) | |
| 869-975, gnl|echTel1|scaffold_308196 (45485-45583) | |
| 869-975, gnl|fr1|chrUn (271180302-271180111) | |
| 869-975, gnl|fr1|chrUn (271180301-271180111) | |
| 869-975, gnl|hg17|chr3 (121231093-121231196) | |
| 869-975, gnl|Hg17|chr3 (185034320-185034213) | |
| 869-975, gnl|hg17|chr6 (143705903-143706004) | |
| 869-975, gnl|loxAfr1|scaffold_9096 (39244-39143) | |
| 869-975, gnl|loxAfr1|scaffold_9096 (39244-39142) | |
| 869-975, gnl|mm7|chr2 (3604392-3604494) | |
| 869-975, gnl|mm7|chr2 (3604392-3604494) | |
| 869-975, gnl|Mm7|chr2 (3604391-3604493) | |
| 869-975, gnl|oryCun1|scaffold_135672 (5918-5816) | |
| 869-975, gnl|oryCun1|scaffold_135672 (5918-5816) | |
| 869-975, gnl|panTro1|chr2 (122953798-122953900) | |
| 869-975, gnl|panTro1|chr5 (146620056-146620157) | |
| 869-975, gnl|rheMac2|chr2 (40060650-40060752) | |
| 869-975, gnl|rheMac2|chr4 (120346864-120346763) | |
| 869-975, gnl|rn3|chr6 (34511578-34511680) | |
| 869-975, gnl|rn3|chr6 (34511578-34511680) | |
| 869-975, gnl|tetNig1|chrUn_random (135804143-135804327) | |
| 869-975, gnl|tetNig1|chrUn_random (135804144-135804327) | |
| 869-975, gnl|xenTro1|scaffold_566 (704530-704428) | |
| 1219-1392, gnl|bosTau2|chr14 (4402351-4402181) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| clu (0.598229) | |
| gul (0.532765) | |
| pro (0.512033) | |
| sme (0.305437) | |
| ill (0.175593) | |
| fco (0.157208) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.598229) | |
| gul (0.532765) | |
| pro (0.512033) | |
| sme (0.305437) | |
| ill (0.175593) | |
| fco (0.157208) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |