Non-Coding RNA Search

Ss1.1-Mixn-0005c15.5

Sequence:


               
               AGGGCTGCGTCCTTGGGCTGGCGCCCTTCTCCAGGCCTGAGACGCAGCTCTACAGGAGAC
CAAGTCCTGCTCTGCAGAGAACTCCTTCTCCTTCCAGAACAAGGATCTTCAGCAGGAGTC
AAGCTGTGGATGAAGCAGGCACGTGGGTGAAGCTGGCTCCTGACCCAACTGCGAACCTAG
TCCTCAGCAGTTACAGAAAAGATAACCACAAGGCTGGCTGAAAGCCAGTGCTCCTTCCTG
CAAGTCTGGACCCAGGCTCCAGTTAAAGTTGAAGAAATTATCTTAGATAAGTAGTCAAGG
ACGTGTGGCCATTCATAATAGCATTTATAATCAGCTGGAGCACTTTTCCGATTTATCATT
TGCTTAGGTCCCTTTGCTTGCTTCCTGATTCATCATTTTACCTGCCTGTTATTGCAGTCA
ATCAGATCTGTTATTTGTTGTAATATTGATAACAGGAGATACTTATCTCTTGCTCTATTT
TAATTTAACCCTTGTGGTAATAGGGTTAGTACCAAAGTTTAGGGCCACCACTCTTTTCCC
ATATAAGCTGTTGGCCCCAACTGTAATGATGGCTCTTGTTGTTCTTTACTGTCTCATCTC
ACTGGTGTCTGCTACTTCCTGGAAGGAAAATACTCTAGTTAAGTTGTCTCAGAGTGTAGC
CGATGGTGGGAATTTAAATAATTGTTGGATATGTCATATGAGCCCTCATGCCAGCCATGG
ACAGTATCTCCCATCAGTGGTCCCCATCACTGATTTTGATACCATACCAGACCCTGAGAC
CTTCTATAATCTTTCTCCTCCACGACTCACATTCCAAGTTCAGATAGCCAGTGGGCCTCC
GAATACCCCAACTCCTTGCTTCCACCTGTCTGAGGTAATTTCCATCGCAGGAAAAATGAC
TACTGGTCCCCCAAGGTCCCTCAAATTTCTTCTGAGAAAATGTGATGCCCAAAACCCCCC
CAAGTGTACACTGAATGAATGTGTAAGGGCTAATTCTGACTCCAATTTATGCCAGAAAGT
CAAACAAGTTGGATATCATGTAAATGGACTGTGGAAGGCTTGTAGTAGTTCTCACTCCTG
GCTTGACAACATAATCTCTAAACTCCCCCAAAATGAACAAATTAATGACACTACCCTGGG
AGGTGTAACTTGTGCTCCTCCGGGATTTGTCTTTGTCTGTGGCATAGGGAGTGACTCGCC
AACGCAAGGATGGGCACATCGCTGCTTAGACAGCTGGCAAATGCAAGGGTCATGTCTACT
GGGATATTTTAGGACCCCCTTCTCCGTGCACAGCCTGCAGAGCATCACTTCCCACTCTAA
ATCAAACTCCCGCCTTAAAAGAGAGATAATGGCTAGGTATGAGGACAATAAAGGACAAAG
CAACCTCATACCAAGTGCCGGAATTTATATCAATAGAGATATGATCCGTAACCTATCTGC
CACAATTGAACAAATTGCTGAGGACACAGCTGAAAGTATTGCAGCCCAACACACATCTTT
GAACTCCATGGCTCGAGTGGTCCTGGATAATAGAATGGCTCTTGATTTCTTACGGGCAAA
AGAAGGAGGAGTATGTGCAGTGGCTCATGACACATGCTGCACATACATCAATTCCAATGG
AGAAGTTGAAACCCAAGTAAATAAAGTAAGTCAACAGGCTACCTGGTTATAGGATGGACC
TAAAGAGGATATGCACCAGGACTTTTATTTTCCTGGTTGCCATCTGGAATAGGGGGGACT
CTTTGGGGGGTACTGATTCAAGGGTCCACTTTGATGATCATCCTCTTTGTAATGTGCTTA
TTAATTTTCAAATATCTGTCCAGGTGCTGTGACAAAGTGGTCAAAAGAGAGACAAATGTT
TTCATAATCCAAAATACTGATGTTAAGCCTGGGACTTGAGAATTCTTTGAAAAGAAGTTT
CAAAACTTTCTCTCCTCTAATCCTAAAGAATTAACATCGCCCCTGTTCAGCAGGAAGTAG
CCAGAGCGGTCGTCGCCCCTGTTCCCCTTAGGATTGAGGAGTATGGAAGAAAGGGGGAAC
TGAAACTGAGCAGGATCCTGCAGGGCCTTCCTGGATACAGTGCCCTCTGTGTCCCCCACT
TCCTGTTTGTAGAAAAATCTTTAGTCCCCTAGGCCTTTGCAGGTTCCAAAGAGCAGACTC
AAGCAGTTAATAATTATAGAAGTGAAAAAAAAATGCAGAAACAAAGAATAGCAATCAAGC
AAGAAAAGTTCAGCCATAAAGCAGAGTCACAGGACTCCTAGTTCCTCCTCAAGGGATATA
GATAACAATCCGATGCATTTTCTTGAGTTGTTTTACAGAAACCAAGACCCCGTGATGAAA
CCTGCTGACCACAGCCATGGAGACCCAGAAAAGTTGGAACCAGAAGAGTGATGACCAAGA
TGGCAGAAATATAACTTTGTTGCTTAACACCCAGACAATCAGAAGAATCCATAAGCTAAT
CACATGCTTAAGACACTCATCCTTAATTTTAGTCTTTAAAAACCCTTGCCTGAAAGCTAT
CAGGGAGTTCAGGTCCATTAAGCATTAGCTGCCCATCCTGCTTGCTTGACATCCTGTGAA
TAAATGCTGTACTTTTCTTCATCACAATCCAGTGTCAGTGGATTGACTTTACTGTGCATT
GGGTGAGCAGACCTCAGTTTGGCATTCAGTTCAGTAACAGCCTGCATTTCAACTGGGAGA
GTTCAGTGGTTTTCCTTAACAACTTTTCAATTTTTTTTGGAGGGGGGTCTTTTTTGCCTT
TTCTAGGGCCACTTCTCATGGCATATGGAGGTTCTCAGGCTAGGTGTCTAATCAGAGCTG
TAGCCACCGGCCTATGCCAGAGCCACAGCAGTGAGGGATCCAAGCCGTGTCTGTGAACTA
CACCACAGCTCATGGCAATGCTGGATCCCTAACCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGCTGCGTCCTTGGGCTGGCGCCCTTCTCCAGGCCTGAGACGCAGCTCTACAGGAGAC
CAAGTCCTGCTCTGCAGAGAACTCCTTCTCCTTCCAGAACAAGGATCTTCAGCAGGAGTC
AAGCTGTGGATGAAGCAGGCACGTGGGTGAAGCTGGCTCCTGACCCAACTGCGAACCTAG
TCCTCAGCAGTTACAGAAAAGATAACCACAAGGCTGGCTGAAAGCCAGTGCTCCTTCCTG
CAAGTCTGGACCCAGGCTCCAGTTAAAGTTGAAGAAATTATCTTAGATAAGTAGTCAAGG
ACGTGTGGCCATTCATAATAGCATTTATAATCAGCTGGAGCACTTTTCCGATTTATCATT
TGCTTAGGTCCCTTTGCTTGCTTCCTGATTCATCATTTTACCTGCCTGTTATTGCAGTCA
ATCAGATCTGTTATTTGTTGTAATATTGATAACAGGAGATACTTATCTCTTGCTCTATTT
TAATTTAACCCTTGTGGTAATAGGGTTAGTACCAAAGTTTAGGGCCACCACTCTTTTCCC
ATATAAGCTGTTGGCCCCAACTGTAATGATGGCTCTTGTTGTTCTTTACTGTCTCATCTC
ACTGGTGTCTGCTACTTCCTGGAAGGAAAATACTCTAGTTAAGTTGTCTCAGAGTGTAGC
CGATGGTGGGAATTTAAATAATTGTTGGATATGTCATATGAGCCCTCATGCCAGCCATGG
ACAGTATCTCCCATCAGTGGTCCCCATCACTGATTTTGATACCATACCAGACCCTGAGAC
CTTCTATAATCTTTCTCCTCCACGACTCACATTCCAAGTTCAGATAGCCAGTGGGCCTCC
GAATACCCCAACTCCTTGCTTCCACCTGTCTGAGGTAATTTCCATCGCAGGAAAAATGAC
TACTGGTCCCCCAAGGTCCCTCAAATTTCTTCTGAGAAAATGTGATGCCCAAAACCCCCC
CAAGTGTACACTGAATGAATGTGTAAGGGCTAATTCTGACTCCAATTTATGCCAGAAAGT
CAAACAAGTTGGATATCATGTAAATGGACTGTGGAAGGCTTGTAGTAGTTCTCACTCCTG
GCTTGACAACATAATCTCTAAACTCCCCCAAAATGAACAAATTAATGACACTACCCTGGG
AGGTGTAACTTGTGCTCCTCCGGGATTTGTCTTTGTCTGTGGCATAGGGAGTGACTCGCC
AACGCAAGGATGGGCACATCGCTGCTTAGACAGCTGGCAAATGCAAGGGTCATGTCTACT
GGGATATTTTAGGACCCCCTTCTCCGTGCACAGCCTGCAGAGCATCACTTCCCACTCTAA
ATCAAACTCCCGCCTTAAAAGAGAGATAATGGCTAGGTATGAGGACAATAAAGGACAAAG
CAACCTCATACCAAGTGCCGGAATTTATATCAATAGAGATATGATCCGTAACCTATCTGC
CACAATTGAACAAATTGCTGAGGACACAGCTGAAAGTATTGCAGCCCAACACACATCTTT
GAACTCCATGGCTCGAGTGGTCCTGGATAATAGAATGGCTCTTGATTTCTTACGGGCAAA
AGAAGGAGGAGTATGTGCAGTGGCTCATGACACATGCTGCACATACATCAATTCCAATGG
AGAAGTTGAAACCCAAGTAAATAAAGTAAGTCAACAGGCTACCTGGTTATAGGATGGACC
TAAAGAGGATATGCACCAGGACTTTTATTTTCCTGGTTGCCATCTGGAATAGGGGGGACT
CTTTGGGGGGTACTGATTCAAGGGTCCACTTTGATGATCATCCTCTTTGTAATGTGCTTA
TTAATTTTCAAATATCTGTCCAGGTGCTGTGACAAAGTGGTCAAAAGAGAGACAAATGTT
TTCATAATCCAAAATACTGATGTTAAGCCTGGGACTTGAGAATTCTTTGAAAAGAAGTTT
CAAAACTTTCTCTCCTCTAATCCTAAAGAATTAACATCGCCCCTGTTCAGCAGGAAGTAG
CCAGAGCGGTCGTCGCCCCTGTTCCCCTTAGGATTGAGGAGTATGGAAGAAAGGGGGAAC
TGAAACTGAGCAGGATCCTGCAGGGCCTTCCTGGATACAGTGCCCTCTGTGTCCCCCACT
TCCTGTTTGTAGAAAAATCTTTAGTCCCCTAGGCCTTTGCAGGTTCCAAAGAGCAGACTC
AAGCAGTTAATAATTATAGAAGTGAAAAAAAAATGCAGAAACAAAGAATAGCAATCAAGC
AAGAAAAGTTCAGCCATAAAGCAGAGTCACAGGACTCCTAGTTCCTCCTCAAGGGATATA
GATAACAATCCGATGCATTTTCTTGAGTTGTTTTACAGAAACCAAGACCCCGTGATGAAA
CCTGCTGACCACAGCCATGGAGACCCAGAAAAGTTGGAACCAGAAGAGTGATGACCAAGA
TGGCAGAAATATAACTTTGTTGCTTAACACCCAGACAATCAGAAGAATCCATAAGCTAAT
CACATGCTTAAGACACTCATCCTTAATTTTAGTCTTTAAAAACCCTTGCCTGAAAGCTAT
CAGGGAGTTCAGGTCCATTAAGCATTAGCTGCCCATCCTGCTTGCTTGACATCCTGTGAA
TAAATGCTGTACTTTTCTTCATCACAATCCAGTGTCAGTGGATTGACTTTACTGTGCATT
GGGTGAGCAGACCTCAGTTTGGCATTCAGTTCAGTAACAGCCTGCATTTCAACTGGGAGA
GTTCAGTGGTTTTCCTTAACAACTTTTCAATTTTTTTTGGAGGGGGGTCTTTTTTGCCTT
TTCTAGGGCCACTTCTCATGGCATATGGAGGTTCTCAGGCTAGGTGTCTAATCAGAGCTG
TAGCCACCGGCCTATGCCAGAGCCACAGCAGTGAGGGATCCAAGCCGTGTCTGTGAACTA
CACCACAGCTCATGGCAATGCTGGATCCCTAACCTA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1705-2088, gnl|bosTau2|chr28 (12082175-12082563)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1705-2088, gnl|bosTau2|chr28 (12082175-12082563)

Expressed library(ies): 61 entry(ies)

More info

Expressed library(ies): 61 entry(ies)

Help | Less info


               
               spl (4.86827)
               

               
               liv (2.92569)
               

               
               spc (1.92722)
               

               
               clu (1.79469)
               

               
               cty (1.76936)
               

               
               csk (1.68895)
               

               
               cly (1.20642)
               

               
               aor (1.17165)
               

               
               lun (1.05342)
               

               
               csp (0.967118)
               

               
               jca (0.911681)
               

               
               fat (0.737137)
               

               
               lnt (0.711541)
               

               
               ova (0.645661)
               

               
               cte (0.58548)
               

               
               sto (0.539471)
               

               
               bla (0.497389)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               cov (0.396458)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               duo (0.345602)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               ski (0.29347)
               

               
               che (0.272628)
               

               
               ste (0.270416)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 61 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (4.86827)
               

               
               liv (2.92569)
               

               
               spc (1.92722)
               

               
               clu (1.79469)
               

               
               cty (1.76936)
               

               
               csk (1.68895)
               

               
               cly (1.20642)
               

               
               aor (1.17165)
               

               
               lun (1.05342)
               

               
               csp (0.967118)
               

               
               jca (0.911681)
               

               
               fat (0.737137)
               

               
               lnt (0.711541)
               

               
               ova (0.645661)
               

               
               cte (0.58548)
               

               
               sto (0.539471)
               

               
               bla (0.497389)
               

               
               hea (0.408998)
               

               
               pla (0.401016)
               

               
               cov (0.396458)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               duo (0.345602)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               jej (0.296765)
               

               
               ski (0.29347)
               

               
               che (0.272628)
               

               
               ste (0.270416)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	spl (4.86827)
	liv (2.92569)
	spc (1.92722)
	clu (1.79469)
	cty (1.76936)
	csk (1.68895)
	cly (1.20642)
	aor (1.17165)
	lun (1.05342)
	csp (0.967118)
	jca (0.911681)
	fat (0.737137)
	lnt (0.711541)
	ova (0.645661)
	cte (0.58548)
	sto (0.539471)
	bla (0.497389)
	hea (0.408998)
	pla (0.401016)
	cov (0.396458)
	elu (0.385356)
	sug (0.381874)
	gul (0.355177)
	rec (0.346141)
	duo (0.345602)
	cut (0.339847)
	vin (0.332557)
	nje (0.33184)
	cli (0.305623)
	cag (0.302389)
	isp (0.300752)
	bfe (0.299715)
	jej (0.296765)
	ski (0.29347)
	che (0.272628)
	ste (0.270416)
	nmm (0.265604)
	ret (0.257467)
	med (0.232504)
	mas (0.210305)
	fli (0.202881)
	nbm (0.198649)
	ldo (0.194005)
	nlu (0.191681)
	cmu (0.186393)
	fty (0.17584)
	ton (0.1755)
	mcp (0.170648)
	cje (0.165235)
	fco (0.157208)
	tbr (0.154178)
	eli (0.151814)
	hyp (0.142837)
	pty (0.142714)
	hlv (0.139256)
	ssp (0.13552)
	ute (0.132784)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	eje (0.0988338)