Non-Coding RNA Search

Ss1.1-Mixn-0005c23.5

Sequence:


               
               GGGGCGGGCGCCGGCAGGCCCCTGTGGGCAGCGGAGGGTTGGGCCGGGCTCTCAACCCCT
CGCTACCCACCGGCTGACAGGGGGAGGAGCCAGCTGGGAGGGCGGGGGTCGCGTCGGAGC
CCCGGACTAGCGAGTGGGACCGGGATCCTAGCGCAGGCCGGGGACGCGACTGGAAGGCTG
TTAGGGCCATCGCCGCTGGGCTCCCCCGCACTGACCGCACCGGGGTGGGGCGAGGGGCTT
CGCAGGCCGCCAGTATCGATATGCTGCTAGAGGAGGTCTGCGCCGGCGACCGGCTGAGCG
GAGCGGCGGCCCGGGGCGACGTGCAGGAGGTGCGCCGCCTTCTGCACCGCGAACTGGTGC
ACCCCGACGTCCTGAACCGCTTTGGCAAGACGGCGCTGCAGGTCATGATGTTTGGCAGCC
CCACCATCGCCCAGGAGCTCCTGAAACAAGGTGCCAGCCCCAATGTCCAGGATGCTTCCG
GCACCACTCCGGCCCACGATGCAGCCCGTACTGGATTCCTTGACACCCTGAAAGTGTTGG
TAGAGCACGGCGCTGATGTCAATGCACCTGATGGCACCGGGGCACTCCCCATTCATCTGG
CTGTGAGAGAGGGCCACACCTCTGTGGTCAGCTTCCTGGCTGCTGAATCTGATCTCCATC
ACAGGGACGCCAGGGGGCTTACACCCCTGGAGCTGGCAAGGGGGAGAGGTGCTCAGGATC
TCATGGACATACTACAGCGGCACACAGTGGCACCACTGTGACCTGGGGCCACCCAGTCCA
GCAACAGGACCCGGCTGGGTTCTGTGTCAGAAGAGAAGGGAAGAAACACTTTCTCCCTTA
GCTCCTCCTGCCCACTGCCGAGGGGCACAAGTTTGTGGCTTGTTGGTGTTGATTTCTGGG
GTGTGTGTGTTTGAGGTGCATTTCTCATTTTTTTTCCTCTCACCCCTTTTGGTGTATTGG
GCAGAGAAGGGCTCCTGCAGGCAACAGCCACCTAAACGGTTCAGTTTCCTCCACCCCCCA
GACTGCTGGGACTACAGACAAGTCCCAAGGGCAGAGCGTTTAAAGCCCTAGCTCCAGAGT
GAGGTCATTCCTTCCAAGGCTCCTGGAACCTGTCGACCTTGGCCAGCTATACCCAGAGCT
AGACCTCAAGTGTGCACACTGCTTTCGGGCATGGGGGAGGGGGGTGTTCCAAATCAGTAA
AAGGGTAGTATGAGTTCATTCATATTTTGTTTAAAAGCTTGTTTTCCAGTCCCTTGTACA
GCGTTAACACATTCTATTTATTAAGCTTTATGGAAAAAATTGTTGTGTGTGTAATTTAAT
GTTTTTACCCATTAAATTAAGACTTGTGCATGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCGGGCGCCGGCAGGCCCCTGTGGGCAGCGGAGGGTTGGGCCGGGCTCTCAACCCCT
CGCTACCCACCGGCTGACAGGGGGAGGAGCCAGCTGGGAGGGCGGGGGTCGCGTCGGAGC
CCCGGACTAGCGAGTGGGACCGGGATCCTAGCGCAGGCCGGGGACGCGACTGGAAGGCTG
TTAGGGCCATCGCCGCTGGGCTCCCCCGCACTGACCGCACCGGGGTGGGGCGAGGGGCTT
CGCAGGCCGCCAGTATCGATATGCTGCTAGAGGAGGTCTGCGCCGGCGACCGGCTGAGCG
GAGCGGCGGCCCGGGGCGACGTGCAGGAGGTGCGCCGCCTTCTGCACCGCGAACTGGTGC
ACCCCGACGTCCTGAACCGCTTTGGCAAGACGGCGCTGCAGGTCATGATGTTTGGCAGCC
CCACCATCGCCCAGGAGCTCCTGAAACAAGGTGCCAGCCCCAATGTCCAGGATGCTTCCG
GCACCACTCCGGCCCACGATGCAGCCCGTACTGGATTCCTTGACACCCTGAAAGTGTTGG
TAGAGCACGGCGCTGATGTCAATGCACCTGATGGCACCGGGGCACTCCCCATTCATCTGG
CTGTGAGAGAGGGCCACACCTCTGTGGTCAGCTTCCTGGCTGCTGAATCTGATCTCCATC
ACAGGGACGCCAGGGGGCTTACACCCCTGGAGCTGGCAAGGGGGAGAGGTGCTCAGGATC
TCATGGACATACTACAGCGGCACACAGTGGCACCACTGTGACCTGGGGCCACCCAGTCCA
GCAACAGGACCCGGCTGGGTTCTGTGTCAGAAGAGAAGGGAAGAAACACTTTCTCCCTTA
GCTCCTCCTGCCCACTGCCGAGGGGCACAAGTTTGTGGCTTGTTGGTGTTGATTTCTGGG
GTGTGTGTGTTTGAGGTGCATTTCTCATTTTTTTTCCTCTCACCCCTTTTGGTGTATTGG
GCAGAGAAGGGCTCCTGCAGGCAACAGCCACCTAAACGGTTCAGTTTCCTCCACCCCCCA
GACTGCTGGGACTACAGACAAGTCCCAAGGGCAGAGCGTTTAAAGCCCTAGCTCCAGAGT
GAGGTCATTCCTTCCAAGGCTCCTGGAACCTGTCGACCTTGGCCAGCTATACCCAGAGCT
AGACCTCAAGTGTGCACACTGCTTTCGGGCATGGGGGAGGGGGGTGTTCCAAATCAGTAA
AAGGGTAGTATGAGTTCATTCATATTTTGTTTAAAAGCTTGTTTTCCAGTCCCTTGTACA
GCGTTAACACATTCTATTTATTAAGCTTTATGGAAAAAATTGTTGTGTGTGTAATTTAAT
GTTTTTACCCATTAAATTAAGACTTGTGCATGATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21435975|gb|AAM54045.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21435975|gb|AAM54045.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               719-909, + strand, RNAz p=0.972154
               

               
               1067-1173, - strand, RNAz p=0.620548

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               719-909, + strand, RNAz p=0.972154
               

               
               1067-1173, - strand, RNAz p=0.620548

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001800, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001800, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               399-1356, gnl|bosTau2|chr7 (10928113-10927156)
               

               
               399-1356, gnl|Hg17|chr19 (10539096-10538138)
               

               
               399-1356, gnl|Mm7|chr9 (21165891-21164972)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               399-1356, gnl|bosTau2|chr7 (10928113-10927156)
               

               
               399-1356, gnl|Hg17|chr19 (10539096-10538138)
               

               
               399-1356, gnl|Mm7|chr9 (21165891-21164972)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	719-909, + strand, RNAz p=0.972154
	1067-1173, - strand, RNAz p=0.620548

	399-1356, gnl\|bosTau2\|chr7 (10928113-10927156)
	399-1356, gnl\|Hg17\|chr19 (10539096-10538138)
	399-1356, gnl\|Mm7\|chr9 (21165891-21164972)

	cly (0.241284)
	ebs (0.236602)
	ece (0.229305)
	nbm (0.198649)
	fbs (0.175346)
	fhi (0.169578)
	eli (0.151814)
	ssp (0.13552)
	nmm (0.132802)
	cov (0.132153)
	ova (0.129132)
	ese (0.126502)
	cbl (0.114797)
	jej (0.0989218)
	ldo (0.0970026)