Ss1.1-Mixn-0005e22.5
|
TCGAGATGGAGGAAGGAGGCTACGAGTCGGTTCTCTGTGTCAAGCCTGAGGTGCACGTCT
ACCGCATCCCGCCGCGGGCCACCAACCGTGGTTACAGGGCTTCGGAGTGGCAGCTGGACC
AGCCATCATGGAGTGGCCGGCTGCGGATCACTGCAAAAGGGCAGGTGGCCTACATCAAGC
TCGAGGACAGGACCTCAGGGGAGCTTTTTGCTCAGGCCCCTGTGGATCAGTTTCCTGGCA
CAGCGGTGGAGAGTGTGACGGATTCCAGCAGGTACTTCGTTATCCGCATTGAAGACGGAA
ATGGGCGACGGGCATTTATTGGAATTGGCTTCGGGGACCGAGGTGACGCCTTTGACTTCA
ATGTTGCCTTGCAGGACCATTTCAAATGGGTGAAGCAGCAGTGTGAATTTGCAAAACAAG
CCCAGAACCCAGACCAAGGCCCCAAGCTGGACCTAAGCTTCAAGGAGGGCCAGACCATCA
AGCTCAACATTGCGAACATGAAGAAGAAGGAAGGAGCAGCTGGGACTCCCCGAGCCCGGC
CCGCCAGCACAGGAGGCCTGAGCCTGCTTCCCCCTCCCCCGGGGGGGAGAACCTCTACCC
TGACTGCGCACCCTGGGGAGCACTTGTCCGTGGGGGGCTCTGTGATCCAGCCAGCAGTTG
TTCCCAGTTCAGGAGGTGCCACTGTGTCCTGGCCGCAGCCCAAGCCTGCCACTGCTGCCA
CCGCTGACATCTGGGGAGACTTTACCAAATCCACAGGGTCGACTTCCAGCCAGCCTCAGC
CAGGCACCGGCTGGGTTCAGTTCTGACCAGAGCACAACTCTGTCGTGTAACTTCTGGAAA
GGAGCCACCTCATCTGGGCTGAAGGAAGGAGGGTGAAGCAGTCCCTGGCCAGCCTCTTCT
TTGGAGATGACGCTCCTCCCTTCCTTACCTGAACTCTCTTGACAGATTGGGCACGTTAAG
CAGTAAATTGGTACCGTGTCACGGTGGTTCCTGGGATTCAAGGATGCAACCGGAACACCG
GAGGAGAGAGTTCCAGGATCCCTGTCCCTGTCTGTCCTCTTGACACAAGAAAGACTGAGA
CTGCTTCTTCCCTCACGATGACCATATTAAATACAAGCCCCGGGAAAAGAAGGGAATGAA
TGTGTCGCCTGGATTCAGATCAGCCCTTCCCCGGGGTTACGGGTGTCCTGCGATCACTGT
TTGGAAGGGGGCTCTCTGCACTCCCATTGGCTGTAGCCACTGCAGTCCTGGCGCCTTTTG
AGGAGGGGTTCCTTCGGGATTCTAGCAGGATTATAGGCAGCAGCTTGAACAGTCCGGAAG
GAAGTCAAGGGTATTAACCAGCTTTTAAAAAATGTTTTAATACTTGCTTTTGCTAATGTG
CTGAAATGCACTAACTCATTGTCTTTGCAAAAAGGACTGCTTGCAGGAGGCCCCCAAGGT
GCTTCGGAAAGCATTCCTCACCATCAGCCACAGGAGCTGCTGTGAGCTTTGGGAAGCTGT
GTTTATCTCGGCCATGTGCCTGCTGCCCATGCTTGCCAGGCCAGGTGGGCACTGGAAGCC
AGCTGGGACAGTATTTGGGCCAGAAAGTGGCAGCTGTTCTCATGGAGGTGGGGGTTCGGC
CTTCCTGTCCATTGGCAGCTCTCTGGATTCACAGGCTTACGGTGTGGTTCCTGGCAGCTT
GGGTTTGCTCCTTGGTGGTTTCCGAAGTGCCTTGTCTGCAGACAGCTCTTGCTTTCTCTT
CTCCTTCAGGGACTGTGCATGACAGAAGCAGTTCTGAAGCAGCTGGAAGTCTAGGGTTGC
CTGTGTTCCTGGTTTATGAGAATTTTATCTGAGCACATCTTTAAAATTGCTTTTATCGAC
ATACGTTACCTCTTAATTGAAAGATTTCTAAAGGGTCAAGGTGATGAACTGATAAAAAAT
GCTGACCTTTTTATGGGACCAGATTTCTAAGATAAAAAAATAAATATTTTTTTCTCTGTC
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCGAGATGGAGGAAGGAGGCTACGAGTCGGTTCTCTGTGTCAAGCCTGAGGTGCACGTCT
ACCGCATCCCGCCGCGGGCCACCAACCGTGGTTACAGGGCTTCGGAGTGGCAGCTGGACC
AGCCATCATGGAGTGGCCGGCTGCGGATCACTGCAAAAGGGCAGGTGGCCTACATCAAGC
TCGAGGACAGGACCTCAGGGGAGCTTTTTGCTCAGGCCCCTGTGGATCAGTTTCCTGGCA
CAGCGGTGGAGAGTGTGACGGATTCCAGCAGGTACTTCGTTATCCGCATTGAAGACGGAA
ATGGGCGACGGGCATTTATTGGAATTGGCTTCGGGGACCGAGGTGACGCCTTTGACTTCA
ATGTTGCCTTGCAGGACCATTTCAAATGGGTGAAGCAGCAGTGTGAATTTGCAAAACAAG
CCCAGAACCCAGACCAAGGCCCCAAGCTGGACCTAAGCTTCAAGGAGGGCCAGACCATCA
AGCTCAACATTGCGAACATGAAGAAGAAGGAAGGAGCAGCTGGGACTCCCCGAGCCCGGC
CCGCCAGCACAGGAGGCCTGAGCCTGCTTCCCCCTCCCCCGGGGGGGAGAACCTCTACCC
TGACTGCGCACCCTGGGGAGCACTTGTCCGTGGGGGGCTCTGTGATCCAGCCAGCAGTTG
TTCCCAGTTCAGGAGGTGCCACTGTGTCCTGGCCGCAGCCCAAGCCTGCCACTGCTGCCA
CCGCTGACATCTGGGGAGACTTTACCAAATCCACAGGGTCGACTTCCAGCCAGCCTCAGC
CAGGCACCGGCTGGGTTCAGTTCTGACCAGAGCACAACTCTGTCGTGTAACTTCTGGAAA
GGAGCCACCTCATCTGGGCTGAAGGAAGGAGGGTGAAGCAGTCCCTGGCCAGCCTCTTCT
TTGGAGATGACGCTCCTCCCTTCCTTACCTGAACTCTCTTGACAGATTGGGCACGTTAAG
CAGTAAATTGGTACCGTGTCACGGTGGTTCCTGGGATTCAAGGATGCAACCGGAACACCG
GAGGAGAGAGTTCCAGGATCCCTGTCCCTGTCTGTCCTCTTGACACAAGAAAGACTGAGA
CTGCTTCTTCCCTCACGATGACCATATTAAATACAAGCCCCGGGAAAAGAAGGGAATGAA
TGTGTCGCCTGGATTCAGATCAGCCCTTCCCCGGGGTTACGGGTGTCCTGCGATCACTGT
TTGGAAGGGGGCTCTCTGCACTCCCATTGGCTGTAGCCACTGCAGTCCTGGCGCCTTTTG
AGGAGGGGTTCCTTCGGGATTCTAGCAGGATTATAGGCAGCAGCTTGAACAGTCCGGAAG
GAAGTCAAGGGTATTAACCAGCTTTTAAAAAATGTTTTAATACTTGCTTTTGCTAATGTG
CTGAAATGCACTAACTCATTGTCTTTGCAAAAAGGACTGCTTGCAGGAGGCCCCCAAGGT
GCTTCGGAAAGCATTCCTCACCATCAGCCACAGGAGCTGCTGTGAGCTTTGGGAAGCTGT
GTTTATCTCGGCCATGTGCCTGCTGCCCATGCTTGCCAGGCCAGGTGGGCACTGGAAGCC
AGCTGGGACAGTATTTGGGCCAGAAAGTGGCAGCTGTTCTCATGGAGGTGGGGGTTCGGC
CTTCCTGTCCATTGGCAGCTCTCTGGATTCACAGGCTTACGGTGTGGTTCCTGGCAGCTT
GGGTTTGCTCCTTGGTGGTTTCCGAAGTGCCTTGTCTGCAGACAGCTCTTGCTTTCTCTT
CTCCTTCAGGGACTGTGCATGACAGAAGCAGTTCTGAAGCAGCTGGAAGTCTAGGGTTGC
CTGTGTTCCTGGTTTATGAGAATTTTATCTGAGCACATCTTTAAAATTGCTTTTATCGAC
ATACGTTACCTCTTAATTGAAAGATTTCTAAAGGGTCAAGGTGATGAACTGATAAAAAAT
GCTGACCTTTTTATGGGACCAGATTTCTAAGATAAAAAAATAAATATTTTTTTCTCTGTC
AAAAAAAAAAAA
|
|
gi|62751913|ref|NP_001015562.1| |
Protein identifier
|
gi|62751913|ref|NP_001015562.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
96-199, gnl|bosTau2|chr2 (86043519-86043416) |
|
96-199, gnl|canFam2|chr2 (84183010-84182808) |
|
96-199, gnl|danRer3|chr19 (3305651-3305771) |
|
96-199, gnl|dasNov1|scaffold_23801 (19399-19208) |
|
96-199, gnl|echTel1|scaffold_289908 (82481-82678) |
|
96-199, gnl|fr1|chrUn (174700085-174700243) |
|
96-199, gnl|hg17|chr1 (16515399-16515599) |
|
96-199, gnl|Hg17|chr1 (16515431-16515534) |
|
96-199, gnl|loxAfr1|scaffold_21865 (34447-34245) |
|
96-199, gnl|mm7|chr4 (140453529-140453318) |
|
96-199, gnl|Mm7|chr4 (140453503-140453400) |
|
96-199, gnl|monDom2|scaffold_109 (2515645-2515456) |
|
96-199, gnl|oryCun1|scaffold_69039 (7835-7652) |
|
96-199, gnl|panTro1|chr1 (16678741-16678941) |
|
96-199, gnl|rheMac2|chr1 (19239500-19239701) |
|
96-199, gnl|rn3|chr5 (159944092-159943899) |
|
96-199, gnl|tetNig1|chr11 (5770729-5770840) |
| |
|
494-673, gnl|bosTau2|chr2 (86036919-86036740) |
|
494-673, gnl|Hg17|chr1 (16523638-16523817) |
|
494-673, gnl|Mm7|chr4 (140448675-140448496) |
| |
|
757-1981, gnl|bosTau2|chr2 (86033029-86031770) |
|
757-1981, gnl|Hg17|chr1 (16530642-16531879) |
|
757-1981, gnl|Mm7|chr4 (140446054-140444958) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
96-199, gnl|bosTau2|chr2 (86043519-86043416) |
|
96-199, gnl|canFam2|chr2 (84183010-84182808) |
|
96-199, gnl|danRer3|chr19 (3305651-3305771) |
|
96-199, gnl|dasNov1|scaffold_23801 (19399-19208) |
|
96-199, gnl|echTel1|scaffold_289908 (82481-82678) |
|
96-199, gnl|fr1|chrUn (174700085-174700243) |
|
96-199, gnl|hg17|chr1 (16515399-16515599) |
|
96-199, gnl|Hg17|chr1 (16515431-16515534) |
|
96-199, gnl|loxAfr1|scaffold_21865 (34447-34245) |
|
96-199, gnl|mm7|chr4 (140453529-140453318) |
|
96-199, gnl|Mm7|chr4 (140453503-140453400) |
|
96-199, gnl|monDom2|scaffold_109 (2515645-2515456) |
|
96-199, gnl|oryCun1|scaffold_69039 (7835-7652) |
|
96-199, gnl|panTro1|chr1 (16678741-16678941) |
|
96-199, gnl|rheMac2|chr1 (19239500-19239701) |
|
96-199, gnl|rn3|chr5 (159944092-159943899) |
|
96-199, gnl|tetNig1|chr11 (5770729-5770840) |
| |
|
494-673, gnl|bosTau2|chr2 (86036919-86036740) |
|
494-673, gnl|Hg17|chr1 (16523638-16523817) |
|
494-673, gnl|Mm7|chr4 (140448675-140448496) |
| |
|
757-1981, gnl|bosTau2|chr2 (86033029-86031770) |
|
757-1981, gnl|Hg17|chr1 (16530642-16531879) |
|
757-1981, gnl|Mm7|chr4 (140446054-140444958) |
|
clu (0.598229) |
|
nco (0.323468) |
|
cty (0.31224) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
col (0.195008) |
|
ill (0.175593) |
|
cje (0.165235) |
|
csp (0.161186) |
|
cag (0.151194) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
pla (0.133672) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
clu (0.598229) |
|
nco (0.323468) |
|
cty (0.31224) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
col (0.195008) |
|
ill (0.175593) |
|
cje (0.165235) |
|
csp (0.161186) |
|
cag (0.151194) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
pla (0.133672) |
|
med (0.116252) |
|
nbm (0.0993246) |
