Non-Coding RNA Search

Ss1.1-Mixn-0005h20.5

Sequence:


               
               TGATCAGATCCACACCAATGAAGAGCCCAACGCCCCTGGAGCCAAAAGTGACATCTCAAG
AGGCAACAGTAGCTGTGGGTGTTTCCGTTCTTCTCTGGCATGGAGATCAACATTCCCACC
CTCCCAGGTGGTTAGGAGGTGAACCAAGAAGCCATGCCAGGTCCCTGAGGCTCACCTGAT
ATCTCCGAGGATGGGATGTTTGGCTTTCTGCTGCCTCAGGAGCTCCATGAGAAAGCTGCC
CACACAGGCGGCGTGAGCCTGCAGCTGCTCCTTCTCCAAGACGTCCAGGACAGCCAGCCC
CACAGCACAGGACACTGGGCTGCCTCCAAACTGAGCCAGGGAACAAAGGGCAGGTCAGGT
GCCCAGCAGAGTGGGCATGCCCCAGGATGTGCCACACAGAACTGCCACACACATTCCAAG
GCGGTAACAAGAACACACCCGAGCCTCTGAGGGCTTAGCGTGCTGAGCACTACATGGGGT
TCTCCTGAGGGCCCCATGGGTTGTCCCCTTTTTCCAGGTGCTAATATGACTGTAACCCAG
GTCAAGTACCCATGGAAGATGCAAAAATCACTGGAGAGGGTGTATTGGGCATTCCCACAG
AGCTGGTTTTTGACGAGAGGCTTCAGGGCCTCATCTCGTGGGCTGCGCCCAGACCCACAC
CCACACCATTGCACCATTCCTGTCACCACCTTCCAGGAGGGTCAAGAGCAACAAGCTGGA
GCCACATTCTGTGGCTCTGCTGGCTGAGCCCAAGGCAGATTTTAGGGCACAGGCTACAAG
CTAGCTGCCTGTGAGCCAAATGGCCTGAGGATTCCTTTTGTTTGACTTGTGTGGCATAAT
TAAAATAATTTTAGGTAGTTCCCATATGGATCAGTGGTAATGAACCCAACTAGTATCCAT
GAGGCCCTGCTCAGTGGGGTTGGGGATCACGGCAACGCCGGACCCATAACCCACTGAGCA
AGGCCAGGGATCGAACCTGCAACCTCATGGTTCCTAGCTGGATTTGTTAGCCACTGAGCC
ACGACGGGAACTCCTGAGGTATACTTTTACATACAGTAAAACACATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATCAGATCCACACCAATGAAGAGCCCAACGCCCCTGGAGCCAAAAGTGACATCTCAAG
AGGCAACAGTAGCTGTGGGTGTTTCCGTTCTTCTCTGGCATGGAGATCAACATTCCCACC
CTCCCAGGTGGTTAGGAGGTGAACCAAGAAGCCATGCCAGGTCCCTGAGGCTCACCTGAT
ATCTCCGAGGATGGGATGTTTGGCTTTCTGCTGCCTCAGGAGCTCCATGAGAAAGCTGCC
CACACAGGCGGCGTGAGCCTGCAGCTGCTCCTTCTCCAAGACGTCCAGGACAGCCAGCCC
CACAGCACAGGACACTGGGCTGCCTCCAAACTGAGCCAGGGAACAAAGGGCAGGTCAGGT
GCCCAGCAGAGTGGGCATGCCCCAGGATGTGCCACACAGAACTGCCACACACATTCCAAG
GCGGTAACAAGAACACACCCGAGCCTCTGAGGGCTTAGCGTGCTGAGCACTACATGGGGT
TCTCCTGAGGGCCCCATGGGTTGTCCCCTTTTTCCAGGTGCTAATATGACTGTAACCCAG
GTCAAGTACCCATGGAAGATGCAAAAATCACTGGAGAGGGTGTATTGGGCATTCCCACAG
AGCTGGTTTTTGACGAGAGGCTTCAGGGCCTCATCTCGTGGGCTGCGCCCAGACCCACAC
CCACACCATTGCACCATTCCTGTCACCACCTTCCAGGAGGGTCAAGAGCAACAAGCTGGA
GCCACATTCTGTGGCTCTGCTGGCTGAGCCCAAGGCAGATTTTAGGGCACAGGCTACAAG
CTAGCTGCCTGTGAGCCAAATGGCCTGAGGATTCCTTTTGTTTGACTTGTGTGGCATAAT
TAAAATAATTTTAGGTAGTTCCCATATGGATCAGTGGTAATGAACCCAACTAGTATCCAT
GAGGCCCTGCTCAGTGGGGTTGGGGATCACGGCAACGCCGGACCCATAACCCACTGAGCA
AGGCCAGGGATCGAACCTGCAACCTCATGGTTCCTAGCTGGATTTGTTAGCCACTGAGCC
ACGACGGGAACTCCTGAGGTATACTTTTACATACAGTAAAACACATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-326, - strand, RNAz p=0.660196

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-326, - strand, RNAz p=0.660196

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               254-385, - strand, RNAmicro p=0.989651

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               254-385, - strand, RNAmicro p=0.989651

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC037567, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC037567, -

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               168-525, gnl|bosTau2|chr7 (22192765-22192404)
               

               
               168-525, gnl|Hg17|chr5 (177574875-177575235)
               


               
               549-726, gnl|bosTau2|chr7 (22192352-22192184)
               

               
               549-726, gnl|Hg17|chr5 (177575280-177575442)
               


               
               734-844, gnl|bosTau2|chr7 (22192147-22192035)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-525, gnl|bosTau2|chr7 (22192765-22192404)
               

               
               168-525, gnl|Hg17|chr5 (177574875-177575235)
               


               
               549-726, gnl|bosTau2|chr7 (22192352-22192184)
               

               
               549-726, gnl|Hg17|chr5 (177575280-177575442)
               


               
               734-844, gnl|bosTau2|chr7 (22192147-22192035)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	168-525, gnl\|bosTau2\|chr7 (22192765-22192404)
	168-525, gnl\|Hg17\|chr5 (177574875-177575235)

	549-726, gnl\|bosTau2\|chr7 (22192352-22192184)
	549-726, gnl\|Hg17\|chr5 (177575280-177575442)

	734-844, gnl\|bosTau2\|chr7 (22192147-22192035)