Non-Coding RNA Search

Ss1.1-Mixn-0005k17.5

Sequence:


               
               GCAGCCCCTACAGCCCGGCCCCGTGCTGCCCTCTGCGCCTTCGGTGCCCGTGGCTCCAAA
ACTGGACCACCAGCGGATGGACACCATCCATGAGGACCCCAGCACGGACTCGCACGTGGA
CGATGACGGCTTCGAGAAGGACCCTTTCCCCAACAGCAGTGCCGCCGCCAAGTCATTTGA
GGATCTCACGGACCATCCGGTCACGAGAAGTGAAAAGGCCTCGTCCTTTAAGCTGCAGCG
CCAGAGTCGCGTTGACAGCAAGGAAACGGAGTGCTAGTTCAGGGCTGCGTCCGGAGCTCT
CGGACTTGGCGTGCAGGATATTTTTATAGATTTGACCTCAGATCACTGCGGAGATCTTGT
GAAGATTTGGGAGAAAAAAGGAAGTGACTTCCCAGCAGATGCTGGTCATGAGTTTGGACT
TCCTCCACCTCCGTGAGACTGTGTGGGTAGCCCTTTTCCTTTGAAGAGGTAAGGCGAATC
TAGCTTACTTTGAGGCCTTCAGGTTTTAGTCTTTTGATCTTTAAAATATCCTTCAACCTG
TGGTGCAGAAGCAGAAACCACAGCTGGATTATGTTATGACTATTTACGTTTTTGTAAATT
ACCTTTATATTGAGAACAGCACTGATTGTGGAGGTGATCATGTTTTTAAGACACTGTAAC
GATCCAATGAACACAAAGAGGCATTTCATCAGTTTCCTGCGAGGATAACTGGAACACAGA
ATAGATGGATTTCTTGCCTTCAGGTAAAATAAAGTCCGAGGGCGTAATGTAACCAAATCT
GCTTTCTGATGCAGAACCCGGTTCTACGTTCCCGCCAAAGGTGGGTTCAGGTTCGAGGTA
TTGCCTAGAACTTAGAGCAGAAGGGAGACCACACATCTGAATTTAGGAATAAACTGGGTT
AATGTTTCTTCCTGTTTCTAAATGTTCAGAATTTCTAATTTCTAGAATTAAAACAATCTA
GCTTTATAGTAAAGATTATAAATTATAGCCACATGAATTGACAGAATCCTGCTGATTAAC
TGTTTAGGGCCATACCTAGCTGGGCAGTTTTTCTGGGTTTTGTAAGTATCTTCCTGTCTC
TCTACGGCTGCCACGCTCCTAAAAAACCCGCCATCCACAAAACCTCAACCCTTCAGAACA
GGAGGACGGTCGCCTCTTCGCAAACACTAGTGGCCCAGACGGTGCGTGCGGTTGGGCGCG
CTTGCCAGGCGAACAGGGTGCGAGGCGCTGGCCGGGGCTCTGTCCTCAGACCATTGGTCC
CTAGACCCTAGACCTTCTGGCTCGCGTGCTTCAGCACCGTCTGCGCGCCCTGCGCGAGGG
ATAAAAACCATCCGGCTGAGTTCTGGTTTCAAAAGCTTTTTCCCCTGCTAAGGACTGCAG
TGTGCTCACCAGCCAGCACCCCTTAACAGGTAACTTGTAAGCTTCGAGGGCAGTCAACCA
ATCCACCAAACCTGTGACAAATCACCTTTTTTTTTTATCCCCTAAGGACGATTGTTACGC
AGATACCTGTTACACTAATACTTGAACTTACACCTTGTGGTATTTGCTGGCTTTTAACTG
GGCCTAATATTCTCATACTTAGTTATACTTTTGGAATATGACGTAAGGTGAGTGGGGTGT
GTGGGTGAATGAGTGAAATGGTTCTGAGCTGAATGTAAGAAAAACGACTTTTTTAATATA
AAATTGCGACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCCCCTACAGCCCGGCCCCGTGCTGCCCTCTGCGCCTTCGGTGCCCGTGGCTCCAAA
ACTGGACCACCAGCGGATGGACACCATCCATGAGGACCCCAGCACGGACTCGCACGTGGA
CGATGACGGCTTCGAGAAGGACCCTTTCCCCAACAGCAGTGCCGCCGCCAAGTCATTTGA
GGATCTCACGGACCATCCGGTCACGAGAAGTGAAAAGGCCTCGTCCTTTAAGCTGCAGCG
CCAGAGTCGCGTTGACAGCAAGGAAACGGAGTGCTAGTTCAGGGCTGCGTCCGGAGCTCT
CGGACTTGGCGTGCAGGATATTTTTATAGATTTGACCTCAGATCACTGCGGAGATCTTGT
GAAGATTTGGGAGAAAAAAGGAAGTGACTTCCCAGCAGATGCTGGTCATGAGTTTGGACT
TCCTCCACCTCCGTGAGACTGTGTGGGTAGCCCTTTTCCTTTGAAGAGGTAAGGCGAATC
TAGCTTACTTTGAGGCCTTCAGGTTTTAGTCTTTTGATCTTTAAAATATCCTTCAACCTG
TGGTGCAGAAGCAGAAACCACAGCTGGATTATGTTATGACTATTTACGTTTTTGTAAATT
ACCTTTATATTGAGAACAGCACTGATTGTGGAGGTGATCATGTTTTTAAGACACTGTAAC
GATCCAATGAACACAAAGAGGCATTTCATCAGTTTCCTGCGAGGATAACTGGAACACAGA
ATAGATGGATTTCTTGCCTTCAGGTAAAATAAAGTCCGAGGGCGTAATGTAACCAAATCT
GCTTTCTGATGCAGAACCCGGTTCTACGTTCCCGCCAAAGGTGGGTTCAGGTTCGAGGTA
TTGCCTAGAACTTAGAGCAGAAGGGAGACCACACATCTGAATTTAGGAATAAACTGGGTT
AATGTTTCTTCCTGTTTCTAAATGTTCAGAATTTCTAATTTCTAGAATTAAAACAATCTA
GCTTTATAGTAAAGATTATAAATTATAGCCACATGAATTGACAGAATCCTGCTGATTAAC
TGTTTAGGGCCATACCTAGCTGGGCAGTTTTTCTGGGTTTTGTAAGTATCTTCCTGTCTC
TCTACGGCTGCCACGCTCCTAAAAAACCCGCCATCCACAAAACCTCAACCCTTCAGAACA
GGAGGACGGTCGCCTCTTCGCAAACACTAGTGGCCCAGACGGTGCGTGCGGTTGGGCGCG
CTTGCCAGGCGAACAGGGTGCGAGGCGCTGGCCGGGGCTCTGTCCTCAGACCATTGGTCC
CTAGACCCTAGACCTTCTGGCTCGCGTGCTTCAGCACCGTCTGCGCGCCCTGCGCGAGGG
ATAAAAACCATCCGGCTGAGTTCTGGTTTCAAAAGCTTTTTCCCCTGCTAAGGACTGCAG
TGTGCTCACCAGCCAGCACCCCTTAACAGGTAACTTGTAAGCTTCGAGGGCAGTCAACCA
ATCCACCAAACCTGTGACAAATCACCTTTTTTTTTTATCCCCTAAGGACGATTGTTACGC
AGATACCTGTTACACTAATACTTGAACTTACACCTTGTGGTATTTGCTGGCTTTTAACTG
GGCCTAATATTCTCATACTTAGTTATACTTTTGGAATATGACGTAAGGTGAGTGGGGTGT
GTGGGTGAATGAGTGAAATGGTTCTGAGCTGAATGTAAGAAAAACGACTTTTTTAATATA
AAATTGCGACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1347-1566, - strand, RNAz p=0.871006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1347-1566, - strand, RNAz p=0.871006

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               7-720, gnl|bosTau2|chr11 (68438611-68439325)
               

               
               7-720, gnl|Hg17|chr2 (9581165-9580463)
               

               
               7-720, gnl|Mm7|chr12 (19684951-19684308)
               


               
               964-1636, gnl|bosTau2|chr11 (68439607-68440275)
               

               
               964-1636, gnl|Hg17|chr2 (9580264-9579373)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-720, gnl|bosTau2|chr11 (68438611-68439325)
               

               
               7-720, gnl|Hg17|chr2 (9581165-9580463)
               

               
               7-720, gnl|Mm7|chr12 (19684951-19684308)
               


               
               964-1636, gnl|bosTau2|chr11 (68439607-68440275)
               

               
               964-1636, gnl|Hg17|chr2 (9580264-9579373)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               pro (1.02407)
               

               
               spl (0.286369)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               spl (0.286369)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	7-720, gnl\|bosTau2\|chr11 (68438611-68439325)
	7-720, gnl\|Hg17\|chr2 (9581165-9580463)
	7-720, gnl\|Mm7\|chr12 (19684951-19684308)

	964-1636, gnl\|bosTau2\|chr11 (68439607-68440275)
	964-1636, gnl\|Hg17\|chr2 (9580264-9579373)

	pro (1.02407)
	spl (0.286369)
	cbe (0.239234)
	nms (0.213858)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	ski (0.146735)
	csk (0.140746)
	ste (0.135208)
	bla (0.124347)
	cly (0.120642)
	cbl (0.114797)
	spc (0.113366)
	cty (0.10408)