Non-Coding RNA Search

Ss1.1-Mixn-0005n21.5

Sequence:


               
               AGCCTTCCGGTCCAGCGGTCCGCCAGGTCCCCGCGGTTCCCGCCCTCTTTCATCCCGGGA
GACGGTTCCGTGAGGAGCCGCGCGCTGTGCATTCGGGCATGCCCCGCTACGAGCTGGCTT
TGATTCTGAAAGCCATGCAGCGGCCTGAGACCGCTGCTGCTTTGAAGCGTACGCTGGAAG
CCCTGATGGACCGAGGGGCTGTAGTGAGGAACTTGGAGAACCTGGGCGAGCGCATGCTTC
CCTACAAGATCTCCGCCCACAATCAGCGGCACTCCAGGGGCGGGTATTTCTTGGTGGATT
TTTATGCACCAGCAACAACTGTTGAAAGCATGATGGAGCATTTGTCTCGAGACATTGATG
TGATTAGACCGAATATCGTAAAACATCCTTTGACCCAGGAAGTGAAAGAGTGTGAAGGGA
TCGTCCCGGTCCCCCTCGAAGAAAAGCTGTATTCCACCAAGAAGAGAAAGTGAGAAGATT
CACCAGATTTTAGCCTTCCATTTAAATCTCTCCCTTGCGGGTACCATGGATTAATAATTT
ACAAGCTTGACCTTTATATAACAAGGTGCAGTCAGTGCCGTTTGATTTTTCTAAGGTATT
TTTAGCTCTCGATCCTCTTTGCTGTGAGAAGTGGGGGAGTGGCTTGCTTAGAGCCACTTT
GTCATCGTGTGTGGTACCAGCACGTCTCCTTGATTTCGTCTCATGAATGTAATTTATTGG
GACTTGTTGCCCTGCAACAACACTAACGCCCTTTGGAAGAGTGAAGCATATAAAGACTGC
CTTGGGTCGCATGCGCGTCATTCAGACAGTGTACCACCCTGTAAAATAAAACTTTAAGAC
CATTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTTCCGGTCCAGCGGTCCGCCAGGTCCCCGCGGTTCCCGCCCTCTTTCATCCCGGGA
GACGGTTCCGTGAGGAGCCGCGCGCTGTGCATTCGGGCATGCCCCGCTACGAGCTGGCTT
TGATTCTGAAAGCCATGCAGCGGCCTGAGACCGCTGCTGCTTTGAAGCGTACGCTGGAAG
CCCTGATGGACCGAGGGGCTGTAGTGAGGAACTTGGAGAACCTGGGCGAGCGCATGCTTC
CCTACAAGATCTCCGCCCACAATCAGCGGCACTCCAGGGGCGGGTATTTCTTGGTGGATT
TTTATGCACCAGCAACAACTGTTGAAAGCATGATGGAGCATTTGTCTCGAGACATTGATG
TGATTAGACCGAATATCGTAAAACATCCTTTGACCCAGGAAGTGAAAGAGTGTGAAGGGA
TCGTCCCGGTCCCCCTCGAAGAAAAGCTGTATTCCACCAAGAAGAGAAAGTGAGAAGATT
CACCAGATTTTAGCCTTCCATTTAAATCTCTCCCTTGCGGGTACCATGGATTAATAATTT
ACAAGCTTGACCTTTATATAACAAGGTGCAGTCAGTGCCGTTTGATTTTTCTAAGGTATT
TTTAGCTCTCGATCCTCTTTGCTGTGAGAAGTGGGGGAGTGGCTTGCTTAGAGCCACTTT
GTCATCGTGTGTGGTACCAGCACGTCTCCTTGATTTCGTCTCATGAATGTAATTTATTGG
GACTTGTTGCCCTGCAACAACACTAACGCCCTTTGGAAGAGTGAAGCATATAAAGACTGC
CTTGGGTCGCATGCGCGTCATTCAGACAGTGTACCACCCTGTAAAATAAAACTTTAAGAC
CATTAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55930992|gb|AAH51302.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55930992|gb|AAH51302.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               280-842, gnl|bosTau2|chr16 (19237285-19237846)
               

               
               280-842, gnl|Hg17|chr21 (34436574-34437149)
               

               
               280-842, gnl|Mm7|chr16 (92162075-92162547)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               280-842, gnl|bosTau2|chr16 (19237285-19237846)
               

               
               280-842, gnl|Hg17|chr21 (34436574-34437149)
               

               
               280-842, gnl|Mm7|chr16 (92162075-92162547)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

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               isp (0.601504)
               

               
               fhi (0.508733)
               

               
               cmu (0.372787)
               

               
               bfe (0.299715)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.601504)
               

               
               fhi (0.508733)
               

               
               cmu (0.372787)
               

               
               bfe (0.299715)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	280-842, gnl\|bosTau2\|chr16 (19237285-19237846)
	280-842, gnl\|Hg17\|chr21 (34436574-34437149)
	280-842, gnl\|Mm7\|chr16 (92162075-92162547)

	isp (0.601504)
	fhi (0.508733)
	cmu (0.372787)
	bfe (0.299715)
	cga (0.279096)
	hlv (0.278513)
	ssp (0.271039)
	sug (0.254582)
	pgl (0.236967)
	pan (0.23596)
	ecc (0.23007)
	spc (0.226732)
	hea (0.204499)
	nep (0.183925)
	gul (0.177588)
	ill (0.175593)
	rec (0.17307)
	mcp (0.170648)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	tra (0.123092)
	jej (0.0989218)
	eje (0.0988338)