Ss1.1-Mixn-0005o19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGACCTCAGTTCAGCCCTAGGAGGCCATGGTGCTTCTCGACAAAGCAATGGCTACTTT CCGCTTGGCACTGATCCAGCTTCACGTTTCTTCTGTCAAATCAGATAACCTCACTCGGGC TTGTGGCTTTATCCAGGAGGCAGCAAAGCAAGGAGCCAAAATAATTTCGCTGCCAGAATG CTTTAATTCTCCATATGGCACGAAATATTTTCCGGAATATGCAGAGAAAATTCCTGGTGA CTCCACGCAGAAGCTGTCTGAAGTAGCAAAGGAGTGCGGCGTATATGTCATTGGAGGTTC CATTCCTGAAGAGGATGCCGGAAAATTATATAACACTTGTGCTGTATTTGGGCCTGATGG AACTTTACTGGCAAAGTACAGAAAGCTCCATCTGTTTGACATTGATGTTCCTGGGAAAAT CACATTTCAAGAATCTAAAACACTGAGTCCTGGTGATAGTTTCTCCACATTTGATACTCC TTACTGCAGGGTGGGCCTGGGCATCTGCTACGACATCCGCTTTGCAGAGCTGGCACAAAT CTATGCACAGAGAGGCTGCCAGCTGTTAGTATATCCTGGAGCTTTTAATTTGACCACTGG ACCAGCCCATTGGGAGCTGCTTCAGCGAGGCCGGGCTGTTGATAATCAGGTGTACGTGGC CACAGCATCTCCGGCCCGGGATGACAAAGCCTCCTATGTTGCCTGGGGACACAGCACCAT TGTGAGTCCTTGGGGGGAGGTCCTCGCCAAAGCCGGTACTGAAGAAAAGATCGTGTATGC AGACATCGACCTGAAGAAGTTGGCTGAAATACGCCAGCAAATCCCTATTTTTAGCCAGAA GCGATCAGACCTCTATGCAGTGGAGGTGAAAAAGCCCTAATGTTTATGTTTCCAGTGTGT CATGAAATGGGAAGTACGTTTGTGCACCGTAACCAATTCCATGGTGATTTCTTTAATGTA GATTTTTTTTTCTTACCAAATTTCAGTCTTTTCTCTTCTTGGAAAGGGGAAGCTCCCTAG AGATGATGGAGCATCAGCTGATGCTGACATTCTCCACATCATATTAAATAGTTAAGGACT CAGGCTGGCATTGAAGAGCAGGAGGAGGGGATGGTTGTAAACCTTCCATACTTAAGTTGC CTCAAAGCAGTTAGTAGAAGTATCAGATGGTATCATGGTGGTTGATTTCACCTTATACAA ATAATATTTATGTCATGAACCCTAATCCTAGAGTTGGAATCCATTATGTAGAAAACTTGG TCTGTGAGCATTCCCTTAAAGGTATGTGTTTGGTTTGTGAGTAGCTGTGGAAGGCAAGGT GATGGATCCCTGGTGTTTGCTAGAGGATTTGGCAGCCCCACTCTTCCTAGCAGCCTTTGG GCTCCTCAAATTCAGGAAGGAGCTAAAATAACACCTGCTAACCCCCCTCACCTCCTGAAA AACAGTGTTTCAACAGTGAGCCTATGGGAGAATGGTAGTGGCATGATTTGGTCAAGGCAA CTTAAGTGTGAATCTCTGCAAAAGATGGGGAGAATGTTTGAATGTCTTTCTTTTTGCTTT TTTCCTAGTAGCGCTTTTAGTTTGTCACAGCCAAGTTTTTAGCCCAGTGGTGTTTAGAAT GTCTTTACACAATTAAAAATAAATAATTCCATTGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGACCTCAGTTCAGCCCTAGGAGGCCATGGTGCTTCTCGACAAAGCAATGGCTACTTT CCGCTTGGCACTGATCCAGCTTCACGTTTCTTCTGTCAAATCAGATAACCTCACTCGGGC TTGTGGCTTTATCCAGGAGGCAGCAAAGCAAGGAGCCAAAATAATTTCGCTGCCAGAATG CTTTAATTCTCCATATGGCACGAAATATTTTCCGGAATATGCAGAGAAAATTCCTGGTGA CTCCACGCAGAAGCTGTCTGAAGTAGCAAAGGAGTGCGGCGTATATGTCATTGGAGGTTC CATTCCTGAAGAGGATGCCGGAAAATTATATAACACTTGTGCTGTATTTGGGCCTGATGG AACTTTACTGGCAAAGTACAGAAAGCTCCATCTGTTTGACATTGATGTTCCTGGGAAAAT CACATTTCAAGAATCTAAAACACTGAGTCCTGGTGATAGTTTCTCCACATTTGATACTCC TTACTGCAGGGTGGGCCTGGGCATCTGCTACGACATCCGCTTTGCAGAGCTGGCACAAAT CTATGCACAGAGAGGCTGCCAGCTGTTAGTATATCCTGGAGCTTTTAATTTGACCACTGG ACCAGCCCATTGGGAGCTGCTTCAGCGAGGCCGGGCTGTTGATAATCAGGTGTACGTGGC CACAGCATCTCCGGCCCGGGATGACAAAGCCTCCTATGTTGCCTGGGGACACAGCACCAT TGTGAGTCCTTGGGGGGAGGTCCTCGCCAAAGCCGGTACTGAAGAAAAGATCGTGTATGC AGACATCGACCTGAAGAAGTTGGCTGAAATACGCCAGCAAATCCCTATTTTTAGCCAGAA GCGATCAGACCTCTATGCAGTGGAGGTGAAAAAGCCCTAATGTTTATGTTTCCAGTGTGT CATGAAATGGGAAGTACGTTTGTGCACCGTAACCAATTCCATGGTGATTTCTTTAATGTA GATTTTTTTTTCTTACCAAATTTCAGTCTTTTCTCTTCTTGGAAAGGGGAAGCTCCCTAG AGATGATGGAGCATCAGCTGATGCTGACATTCTCCACATCATATTAAATAGTTAAGGACT CAGGCTGGCATTGAAGAGCAGGAGGAGGGGATGGTTGTAAACCTTCCATACTTAAGTTGC CTCAAAGCAGTTAGTAGAAGTATCAGATGGTATCATGGTGGTTGATTTCACCTTATACAA ATAATATTTATGTCATGAACCCTAATCCTAGAGTTGGAATCCATTATGTAGAAAACTTGG TCTGTGAGCATTCCCTTAAAGGTATGTGTTTGGTTTGTGAGTAGCTGTGGAAGGCAAGGT GATGGATCCCTGGTGTTTGCTAGAGGATTTGGCAGCCCCACTCTTCCTAGCAGCCTTTGG GCTCCTCAAATTCAGGAAGGAGCTAAAATAACACCTGCTAACCCCCCTCACCTCCTGAAA AACAGTGTTTCAACAGTGAGCCTATGGGAGAATGGTAGTGGCATGATTTGGTCAAGGCAA CTTAAGTGTGAATCTCTGCAAAAGATGGGGAGAATGTTTGAATGTCTTTCTTTTTGCTTT TTTCCTAGTAGCGCTTTTAGTTTGTCACAGCCAAGTTTTTAGCCCAGTGGTGTTTAGAAT GTCTTTACACAATTAAAAATAAATAATTCCATTGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 176-307, gnl|bosTau2|chr1 (24187263-24187393) | |
| 176-307, gnl|canFam2|chr33 (9916854-9916994) | |
| 176-307, gnl|danRer3|chr6 (18292858-18292998) | |
| 176-307, gnl|dasNov1|scaffold_7016 (39280-39160) | |
| 176-307, gnl|echTel1|scaffold_286075 (48186-48326) | |
| 176-307, gnl|fr1|chrUn (42224732-42224598) | |
| 176-307, gnl|galGal2|chr1 (78941345-78941485) | |
| 176-307, gnl|hg17|chr3 (101541340-101541480) | |
| 176-307, gnl|Hg17|chr3 (101541349-101541479) | |
| 176-307, gnl|loxAfr1|scaffold_10415 (674-814) | |
| 176-307, gnl|mm7|chr16 (57021753-57021614) | |
| 176-307, gnl|Mm7|chr16 (57021742-57021613) | |
| 176-307, gnl|monDom2|scaffold_50 (10375971-10375835) | |
| 176-307, gnl|oryCun1|scaffold_117124 (3325-3465) | |
| 176-307, gnl|panTro1|chr2 (102776527-102776667) | |
| 176-307, gnl|rheMac2|chr2 (20547323-20547463) | |
| 176-307, gnl|rn3|chr11 (44347536-44347676) | |
| 176-307, gnl|tetNig1|chr1_random (1270532-1270404) | |
| 633-733, gnl|bosTau2|chr1 (24196889-24196989) | |
| 633-733, gnl|canFam2|chr33 (9925744-9925874) | |
| 633-733, gnl|danRer3|chr6 (18301234-18301342) | |
| 633-733, gnl|dasNov1|scaffold_7016 (38828-38697) | |
| 633-733, gnl|fr1|chrUn (42223427-42223319) | |
| 633-733, gnl|galGal2|chr1 (78943995-78944120) | |
| 633-733, gnl|hg17|chr3 (101553935-101554066) | |
| 633-733, gnl|Hg17|chr3 (101553937-101554037) | |
| 633-733, gnl|loxAfr1|scaffold_10415 (10480-10609) | |
| 633-733, gnl|mm7|chr16 (57017180-57017053) | |
| 633-733, gnl|Mm7|chr16 (57017176-57017076) | |
| 633-733, gnl|oryCun1|scaffold_202780 (81993-82088) | |
| 633-733, gnl|panTro1|chr2 (102789172-102789303) | |
| 633-733, gnl|rheMac2|chr2 (20559624-20559755) | |
| 633-733, gnl|rn3|chr11 (44353630-44353757) | |
| 633-733, gnl|tetNig1|chr1_random (1269665-1269557) | |
| 788-1302, gnl|bosTau2|chr1 (24200234-24200735) | |
| 788-1302, gnl|Hg17|chr3 (101556710-101557198) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-307, gnl|bosTau2|chr1 (24187263-24187393) | |
| 176-307, gnl|canFam2|chr33 (9916854-9916994) | |
| 176-307, gnl|danRer3|chr6 (18292858-18292998) | |
| 176-307, gnl|dasNov1|scaffold_7016 (39280-39160) | |
| 176-307, gnl|echTel1|scaffold_286075 (48186-48326) | |
| 176-307, gnl|fr1|chrUn (42224732-42224598) | |
| 176-307, gnl|galGal2|chr1 (78941345-78941485) | |
| 176-307, gnl|hg17|chr3 (101541340-101541480) | |
| 176-307, gnl|Hg17|chr3 (101541349-101541479) | |
| 176-307, gnl|loxAfr1|scaffold_10415 (674-814) | |
| 176-307, gnl|mm7|chr16 (57021753-57021614) | |
| 176-307, gnl|Mm7|chr16 (57021742-57021613) | |
| 176-307, gnl|monDom2|scaffold_50 (10375971-10375835) | |
| 176-307, gnl|oryCun1|scaffold_117124 (3325-3465) | |
| 176-307, gnl|panTro1|chr2 (102776527-102776667) | |
| 176-307, gnl|rheMac2|chr2 (20547323-20547463) | |
| 176-307, gnl|rn3|chr11 (44347536-44347676) | |
| 176-307, gnl|tetNig1|chr1_random (1270532-1270404) | |
| 633-733, gnl|bosTau2|chr1 (24196889-24196989) | |
| 633-733, gnl|canFam2|chr33 (9925744-9925874) | |
| 633-733, gnl|danRer3|chr6 (18301234-18301342) | |
| 633-733, gnl|dasNov1|scaffold_7016 (38828-38697) | |
| 633-733, gnl|fr1|chrUn (42223427-42223319) | |
| 633-733, gnl|galGal2|chr1 (78943995-78944120) | |
| 633-733, gnl|hg17|chr3 (101553935-101554066) | |
| 633-733, gnl|Hg17|chr3 (101553937-101554037) | |
| 633-733, gnl|loxAfr1|scaffold_10415 (10480-10609) | |
| 633-733, gnl|mm7|chr16 (57017180-57017053) | |
| 633-733, gnl|Mm7|chr16 (57017176-57017076) | |
| 633-733, gnl|oryCun1|scaffold_202780 (81993-82088) | |
| 633-733, gnl|panTro1|chr2 (102789172-102789303) | |
| 633-733, gnl|rheMac2|chr2 (20559624-20559755) | |
| 633-733, gnl|rn3|chr11 (44353630-44353757) | |
| 633-733, gnl|tetNig1|chr1_random (1269665-1269557) | |
| 788-1302, gnl|bosTau2|chr1 (24200234-24200735) | |
| 788-1302, gnl|Hg17|chr3 (101556710-101557198) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| kid (1.03788) | |
| cki (0.826173) | |
| hea (0.613497) | |
| gul (0.532765) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| lun (0.451467) | |
| cmu (0.372787) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| cty (0.31224) | |
| ski (0.29347) | |
| ret (0.257467) | |
| pan (0.23596) | |
| eje (0.197668) | |
| ldo (0.194005) | |
| fty (0.17584) | |
| rec (0.17307) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| jej (0.0989218) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (1.03788) | |
| cki (0.826173) | |
| hea (0.613497) | |
| gul (0.532765) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| lun (0.451467) | |
| cmu (0.372787) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| cty (0.31224) | |
| ski (0.29347) | |
| ret (0.257467) | |
| pan (0.23596) | |
| eje (0.197668) | |
| ldo (0.194005) | |
| fty (0.17584) | |
| rec (0.17307) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| jej (0.0989218) |