Ss1.1-Mixn-0006a21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCGGCAGCCGCGCAGCCCCGCGGAATGGAGCGGCGCCGGGGCTAAGCCGGGCGCGCAC GGGCCGCCGCATGTGCCGCGCCGGGAGCGGCTGCAGAGCGGGCGGAGAGCGAGCGCGAGA GGCCCCGTCGGAGCGGCCGCCGGAGCAGCGCCGGAGATGGGAGAGCAGCCCATCTTCACC ACCCGAGCGCATGTGTTCCAGATCGACCCCAGCACCAAGAAGAACTGGGTGCCTGCAAGC AAGCAGGCCGTCACCGTCTCCTACTTCTACGATGTCACAAGGAACAGCTATCGGATCATC AGTGTGGATGGAGCCAAGGTGATCATCAACAGCACGATCACACCCAATATGACTTTCACC AAAACGTCGCAGAAGTTTGGGCAGTGGGCCGACAGCAGGGCCAACACGGTGTTTGGTTTG GGGTTCTCCTCGGAGCAGCAGCTGACAAAGTTTGCAGAGAAATTCCTGGAGGTGAAAGAA GCTGCCAAACTAGCCAGAGACAAATCCCAGGAGAAAATCGAGACCTCAAGTAATCATTCC CAGCCATCCAGTGTCAACGGGACGGACGATGAAAAGGCCTCCTGTGCGGGTCCTGCCGAC ACACACCTCAAGTCGGAGAATGACAAGCTGAAGATCGCTTTGACGCAGAGTGCTGCCAAC GTGAAGAAATGGGAGATCGAACTGCAGACCCTGCGGGAGAGCAACGCCCGGCTGACCACA GCGCTGCAGGAGTCGGCGGCCAGCGTGGAGCAGTGGAAGAGGCAGTTCTCCCTCTGCCGG GATGAGAATGACCGGCTCCGGAACAAGATCGACGAGCTGGAAGAGCAGTGCAGTGAGATC AACAGAGAGAAGGAGAAGAACACCCAGCTGAAGAGAAGAATTGAGGACCTGGAGTCGGAA CTCCGAGAAAAGGAGACGGAATTGAAAGACCTCCGAAAACAAAGTGAAATCATACCTCAG CTCATGTCAGAGTGTGAGTACGTCTCTGAGAAGTTAGAGGCGGCCGAGAGAGACAATCAG AACCTGGAGGACAAAGTGCGGTCTCTGAAGACAGACATCGAGGAGAGCAGGTACCGACAG CGCCACCTGAAGGTGGAGCTCAAGAGCTTCCTGGAGGTGCTAGACGGGAAGATCGACGAC CTGCACGACTTCCGCCGGGGCCTCTCCAAGCTGGGCGCCGACAACTAGGGCTCGGGAGTC CCTGGGGTGCGCGTGAGCTGGTAGCACTAGGACCTCCTCCTGTTCGCGTGGCTTCTGTAA ACGCAGGCGCCGTTTGTCGTGTTTCCAAACCGGGGGACGCCGTCCACTCTCTCCTCCCCA GAATCGAAATCCGCCCTCGCTTCTCTGGCCTGGCGGGGTTGTGGACGCCTGGACGATGCT GACTCAGGAATCCAGAACTAGGTCTACCTTAAAACGTTTACGCAGTCAGGGCAGGGATGT TTCTATCTTTCTTAAGGGCTGTTGCAACCATAAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCGGCAGCCGCGCAGCCCCGCGGAATGGAGCGGCGCCGGGGCTAAGCCGGGCGCGCAC GGGCCGCCGCATGTGCCGCGCCGGGAGCGGCTGCAGAGCGGGCGGAGAGCGAGCGCGAGA GGCCCCGTCGGAGCGGCCGCCGGAGCAGCGCCGGAGATGGGAGAGCAGCCCATCTTCACC ACCCGAGCGCATGTGTTCCAGATCGACCCCAGCACCAAGAAGAACTGGGTGCCTGCAAGC AAGCAGGCCGTCACCGTCTCCTACTTCTACGATGTCACAAGGAACAGCTATCGGATCATC AGTGTGGATGGAGCCAAGGTGATCATCAACAGCACGATCACACCCAATATGACTTTCACC AAAACGTCGCAGAAGTTTGGGCAGTGGGCCGACAGCAGGGCCAACACGGTGTTTGGTTTG GGGTTCTCCTCGGAGCAGCAGCTGACAAAGTTTGCAGAGAAATTCCTGGAGGTGAAAGAA GCTGCCAAACTAGCCAGAGACAAATCCCAGGAGAAAATCGAGACCTCAAGTAATCATTCC CAGCCATCCAGTGTCAACGGGACGGACGATGAAAAGGCCTCCTGTGCGGGTCCTGCCGAC ACACACCTCAAGTCGGAGAATGACAAGCTGAAGATCGCTTTGACGCAGAGTGCTGCCAAC GTGAAGAAATGGGAGATCGAACTGCAGACCCTGCGGGAGAGCAACGCCCGGCTGACCACA GCGCTGCAGGAGTCGGCGGCCAGCGTGGAGCAGTGGAAGAGGCAGTTCTCCCTCTGCCGG GATGAGAATGACCGGCTCCGGAACAAGATCGACGAGCTGGAAGAGCAGTGCAGTGAGATC AACAGAGAGAAGGAGAAGAACACCCAGCTGAAGAGAAGAATTGAGGACCTGGAGTCGGAA CTCCGAGAAAAGGAGACGGAATTGAAAGACCTCCGAAAACAAAGTGAAATCATACCTCAG CTCATGTCAGAGTGTGAGTACGTCTCTGAGAAGTTAGAGGCGGCCGAGAGAGACAATCAG AACCTGGAGGACAAAGTGCGGTCTCTGAAGACAGACATCGAGGAGAGCAGGTACCGACAG CGCCACCTGAAGGTGGAGCTCAAGAGCTTCCTGGAGGTGCTAGACGGGAAGATCGACGAC CTGCACGACTTCCGCCGGGGCCTCTCCAAGCTGGGCGCCGACAACTAGGGCTCGGGAGTC CCTGGGGTGCGCGTGAGCTGGTAGCACTAGGACCTCCTCCTGTTCGCGTGGCTTCTGTAA ACGCAGGCGCCGTTTGTCGTGTTTCCAAACCGGGGGACGCCGTCCACTCTCTCCTCCCCA GAATCGAAATCCGCCCTCGCTTCTCTGGCCTGGCGGGGTTGTGGACGCCTGGACGATGCT GACTCAGGAATCCAGAACTAGGTCTACCTTAAAACGTTTACGCAGTCAGGGCAGGGATGT TTCTATCTTTCTTAAGGGCTGTTGCAACCATAAGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 2-161, gnl|bosTau2|chr21 (13571777-13571617) | |
| 2-161, gnl|dasNov1|scaffold_7356 (51708-51575) | |
| 2-161, gnl|echTel1|scaffold_240700 (8486-8341) | |
| 2-161, gnl|hg17|chr15 (81412288-81412425) | |
| 2-161, gnl|Hg17|chr15 (81412446-81412287) | |
| 2-161, gnl|mm7|chr7 (77580048-77580185) | |
| 2-161, gnl|Mm7|chr7 (77580204-77580047) | |
| 2-161, gnl|monDom2|scaffold_45 (1681043-1681189) | |
| 2-161, gnl|panTro1|chr16 (82201586-82201723) | |
| 2-161, gnl|rn3|chr1 (138011359-138011496) | |
| 163-320, gnl|bosTau2|chr10 (4530931-4531088) | |
| 163-320, gnl|canFam2|chr3 (30327687-30327492) | |
| 163-320, gnl|danRer3|chr16 (46756004-46756195) | |
| 163-320, gnl|dasNov1|scaffold_18683 (13722-13534) | |
| 163-320, gnl|echTel1|scaffold_284304 (12256-12432) | |
| 163-320, gnl|fr1|chrUn (58656388-58656201) | |
| 163-320, gnl|galGal2|chrZ (5474908-5474732) | |
| 163-320, gnl|hg17|chr5 (78788436-78788630) | |
| 163-320, gnl|Hg17|chr5 (78788596-78788439) | |
| 163-320, gnl|loxAfr1|scaffold_94731 (4968-4794) | |
| 163-320, gnl|mm7|chr13 (90404840-90404668) | |
| 163-320, gnl|Mm7|chr13 (90404678-90404835) | |
| 163-320, gnl|monDom2|scaffold_27 (36573470-36573291) | |
| 163-320, gnl|oryCun1|scaffold_42401 (1073-879) | |
| 163-320, gnl|panTro1|chr4 (36401139-36400945) | |
| 163-320, gnl|rheMac2|chr6 (75683541-75683735) | |
| 163-320, gnl|rn3|chr2 (23544483-23544295) | |
| 163-320, gnl|tetNig1|chr12 (2927395-2927586) | |
| 163-320, gnl|xenTro1|scaffold_183 (1418237-1418048) | |
| 646-819, gnl|bosTau2|chr21 (13488052-13487878) | |
| 646-819, gnl|Hg17|chr15 (81320611-81320429) | |
| 646-819, gnl|Mm7|chr7 (77487792-77487605) | |
| 998-1476, gnl|bosTau2|chr21 (13482900-13482417) | |
| 998-1476, gnl|canFam2|chr3 (57522046-57522316) | |
| 998-1476, gnl|dasNov1|scaffold_162221 (528-806) | |
| 998-1476, gnl|echTel1|scaffold_302752 (251-597) | |
| 998-1476, gnl|hg17|chr14 (105963193-105963542) | |
| 998-1476, gnl|Hg17|chr15 (81315711-81315212) | |
| 998-1476, gnl|loxAfr1|scaffold_77266 (6687-6352) | |
| 998-1476, gnl|mm7|chr7 (77483405-77483712) | |
| 998-1476, gnl|Mm7|chr7 (77483731-77483264) | |
| 998-1476, gnl|monDom2|scaffold_45 (1523709-1524073) | |
| 998-1476, gnl|oryCun1|scaffold_84454 (5215-4865) | |
| 998-1476, gnl|panTro1|chr15 (106587151-106587497) | |
| 998-1476, gnl|rheMac2|chr7 (63681908-63681597) | |
| 998-1476, gnl|rn3|chr1 (137906029-137906353) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-161, gnl|bosTau2|chr21 (13571777-13571617) | |
| 2-161, gnl|dasNov1|scaffold_7356 (51708-51575) | |
| 2-161, gnl|echTel1|scaffold_240700 (8486-8341) | |
| 2-161, gnl|hg17|chr15 (81412288-81412425) | |
| 2-161, gnl|Hg17|chr15 (81412446-81412287) | |
| 2-161, gnl|mm7|chr7 (77580048-77580185) | |
| 2-161, gnl|Mm7|chr7 (77580204-77580047) | |
| 2-161, gnl|monDom2|scaffold_45 (1681043-1681189) | |
| 2-161, gnl|panTro1|chr16 (82201586-82201723) | |
| 2-161, gnl|rn3|chr1 (138011359-138011496) | |
| 163-320, gnl|bosTau2|chr10 (4530931-4531088) | |
| 163-320, gnl|canFam2|chr3 (30327687-30327492) | |
| 163-320, gnl|danRer3|chr16 (46756004-46756195) | |
| 163-320, gnl|dasNov1|scaffold_18683 (13722-13534) | |
| 163-320, gnl|echTel1|scaffold_284304 (12256-12432) | |
| 163-320, gnl|fr1|chrUn (58656388-58656201) | |
| 163-320, gnl|galGal2|chrZ (5474908-5474732) | |
| 163-320, gnl|hg17|chr5 (78788436-78788630) | |
| 163-320, gnl|Hg17|chr5 (78788596-78788439) | |
| 163-320, gnl|loxAfr1|scaffold_94731 (4968-4794) | |
| 163-320, gnl|mm7|chr13 (90404840-90404668) | |
| 163-320, gnl|Mm7|chr13 (90404678-90404835) | |
| 163-320, gnl|monDom2|scaffold_27 (36573470-36573291) | |
| 163-320, gnl|oryCun1|scaffold_42401 (1073-879) | |
| 163-320, gnl|panTro1|chr4 (36401139-36400945) | |
| 163-320, gnl|rheMac2|chr6 (75683541-75683735) | |
| 163-320, gnl|rn3|chr2 (23544483-23544295) | |
| 163-320, gnl|tetNig1|chr12 (2927395-2927586) | |
| 163-320, gnl|xenTro1|scaffold_183 (1418237-1418048) | |
| 646-819, gnl|bosTau2|chr21 (13488052-13487878) | |
| 646-819, gnl|Hg17|chr15 (81320611-81320429) | |
| 646-819, gnl|Mm7|chr7 (77487792-77487605) | |
| 998-1476, gnl|bosTau2|chr21 (13482900-13482417) | |
| 998-1476, gnl|canFam2|chr3 (57522046-57522316) | |
| 998-1476, gnl|dasNov1|scaffold_162221 (528-806) | |
| 998-1476, gnl|echTel1|scaffold_302752 (251-597) | |
| 998-1476, gnl|hg17|chr14 (105963193-105963542) | |
| 998-1476, gnl|Hg17|chr15 (81315711-81315212) | |
| 998-1476, gnl|loxAfr1|scaffold_77266 (6687-6352) | |
| 998-1476, gnl|mm7|chr7 (77483405-77483712) | |
| 998-1476, gnl|Mm7|chr7 (77483731-77483264) | |
| 998-1476, gnl|monDom2|scaffold_45 (1523709-1524073) | |
| 998-1476, gnl|oryCun1|scaffold_84454 (5215-4865) | |
| 998-1476, gnl|panTro1|chr15 (106587151-106587497) | |
| 998-1476, gnl|rheMac2|chr7 (63681908-63681597) | |
| 998-1476, gnl|rn3|chr1 (137906029-137906353) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| che (1.09051) | |
| cst (0.420109) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| cki (0.165235) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (1.09051) | |
| cst (0.420109) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| cki (0.165235) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| cty (0.10408) |