Non-Coding RNA Search

Ss1.1-Mixn-0006b24.5

Sequence:


               
               GCCTTTGTCTGTCTGCGGGCGCGCGCCGCTGCGGTACTCAAGAGCAGCCCATGGAAGAAT
CATATGAGGAGGTGGTGATTAAGGTCGTACGGCAGGAGTGGACATGTTTGGATTTCCAAC
AGCTACACTGCTGGACTGTCATGGAAGATATGCCCAGAATGTAGCATTTTTCAATGTGAT
GACAGAAGCCCACCACAAATATGATCACTCTGAGGCCACAGGATCCTCAAGCTGGGATTT
CCAGAATTCTTTCAGAAGAGAGAAGCTGGAACAAAAATCCCCAGATTCTAAGACACTACA
GGAAGATTCACCTGGAGTGAGGCAAAGGGTCTATGAGTGCCAGGAATGTGGAAAATCCTT
CAGGCAAAAAGGTAGCCTAACATTACATGAGAGAATCCACACTGGCCAAAAGCCCTTTGA
GTGTACCCATTGTGGAAAAAGCTTTAGGGCCAAAGGCAATCTTGTTACACATCAACGAAT
ACATACAGGAGAGAAGCCCTATCAGTGCAAGGAATGTGGGAAAAGCTTTAGTCAACGAGG
TAGTCTGGCCGTTCACGAAAGACTCCACACTGGACAAAAACCCTATGAGTGTGCTATCTG
TCAGAGAAGCTTCAGGAATCAAAGTAACCTTGCTGTTCACAGAAGAGTTCATAGTGGTGA
GAAGCCCTATAGATGTGATCAGTGTGGAAAAGCCTTCAGTCAGAAGGGAAGTTTAATTGT
GCATATCAGAGTCCACACAGGCCTGAAACCCTATGCCTGCACACAATGCAGGAAGAGTTT
CCACACCAGAGGGAATTGTATCCTGCATGGAAAAATCCACACAGGAGAGACACCCTATCT
GTGTGGCCAGTGTGGGAAAAGCTTCACTCAGAGAGGGAGTCTGGCTGTGCACCAACGAAG
CTGCTCACAAAGGCTCACGCTATAACCGTTCTCTTCAAAGGAAGTTCTCTTTATGAATTA
AGAGTATAAAATTCCTTGAGATTAAAAAAACCTATCCAATTTTGTGGAAAGAATGGAGAC
TCTTTCAGAAGCCATCACTGGGTAGAGTAAACTGACTTTCTCCTTTCCCTCAAATGAGTA
TGAAAAATAAATGTCTTGTTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTTGTCTGTCTGCGGGCGCGCGCCGCTGCGGTACTCAAGAGCAGCCCATGGAAGAAT
CATATGAGGAGGTGGTGATTAAGGTCGTACGGCAGGAGTGGACATGTTTGGATTTCCAAC
AGCTACACTGCTGGACTGTCATGGAAGATATGCCCAGAATGTAGCATTTTTCAATGTGAT
GACAGAAGCCCACCACAAATATGATCACTCTGAGGCCACAGGATCCTCAAGCTGGGATTT
CCAGAATTCTTTCAGAAGAGAGAAGCTGGAACAAAAATCCCCAGATTCTAAGACACTACA
GGAAGATTCACCTGGAGTGAGGCAAAGGGTCTATGAGTGCCAGGAATGTGGAAAATCCTT
CAGGCAAAAAGGTAGCCTAACATTACATGAGAGAATCCACACTGGCCAAAAGCCCTTTGA
GTGTACCCATTGTGGAAAAAGCTTTAGGGCCAAAGGCAATCTTGTTACACATCAACGAAT
ACATACAGGAGAGAAGCCCTATCAGTGCAAGGAATGTGGGAAAAGCTTTAGTCAACGAGG
TAGTCTGGCCGTTCACGAAAGACTCCACACTGGACAAAAACCCTATGAGTGTGCTATCTG
TCAGAGAAGCTTCAGGAATCAAAGTAACCTTGCTGTTCACAGAAGAGTTCATAGTGGTGA
GAAGCCCTATAGATGTGATCAGTGTGGAAAAGCCTTCAGTCAGAAGGGAAGTTTAATTGT
GCATATCAGAGTCCACACAGGCCTGAAACCCTATGCCTGCACACAATGCAGGAAGAGTTT
CCACACCAGAGGGAATTGTATCCTGCATGGAAAAATCCACACAGGAGAGACACCCTATCT
GTGTGGCCAGTGTGGGAAAAGCTTCACTCAGAGAGGGAGTCTGGCTGTGCACCAACGAAG
CTGCTCACAAAGGCTCACGCTATAACCGTTCTCTTCAAAGGAAGTTCTCTTTATGAATTA
AGAGTATAAAATTCCTTGAGATTAAAAAAACCTATCCAATTTTGTGGAAAGAATGGAGAC
TCTTTCAGAAGCCATCACTGGGTAGAGTAAACTGACTTTCTCCTTTCCCTCAAATGAGTA
TGAAAAATAAATGTCTTGTTTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55633719|ref|XP_507758.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55633719|ref|XP_507758.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               165-441, - strand, RNAz p=0.996494
               

               
               338-921, - strand, RNAz p=0.992187
               

               
               734-853, - strand, RNAz p=0.713836

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-441, - strand, RNAz p=0.996494
               

               
               338-921, - strand, RNAz p=0.992187
               

               
               734-853, - strand, RNAz p=0.713836

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               165-1104, gnl|bosTau2|chr28 (34673195-34674139)
               


               
               331-899, gnl|bosTau2|chr17 (22552758-22552190)
               

               
               331-899, gnl|Mm7|chr5 (109294620-109295182)
               


               
               338-873, gnl|bosTau2|chr10 (8996663-8996128)
               

               
               338-873, gnl|Hg17|chr19 (42818468-42817849)
               

               
               338-873, gnl|Mm7|chr2 (127310094-127309643)
               


               
               386-858, gnl|bosTau2|chr10 (9010511-9010039)
               

               
               386-858, gnl|Mm7|chr2 (127318513-127318041)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-1104, gnl|bosTau2|chr28 (34673195-34674139)
               


               
               331-899, gnl|bosTau2|chr17 (22552758-22552190)
               

               
               331-899, gnl|Mm7|chr5 (109294620-109295182)
               


               
               338-873, gnl|bosTau2|chr10 (8996663-8996128)
               

               
               338-873, gnl|Hg17|chr19 (42818468-42817849)
               

               
               338-873, gnl|Mm7|chr2 (127310094-127309643)
               


               
               386-858, gnl|bosTau2|chr10 (9010511-9010039)
               

               
               386-858, gnl|Mm7|chr2 (127318513-127318041)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               fbs (0.175346)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fbs (0.175346)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	165-441, - strand, RNAz p=0.996494
	338-921, - strand, RNAz p=0.992187
	734-853, - strand, RNAz p=0.713836

	165-1104, gnl\|bosTau2\|chr28 (34673195-34674139)

	331-899, gnl\|bosTau2\|chr17 (22552758-22552190)
	331-899, gnl\|Mm7\|chr5 (109294620-109295182)

	338-873, gnl\|bosTau2\|chr10 (8996663-8996128)
	338-873, gnl\|Hg17\|chr19 (42818468-42817849)
	338-873, gnl\|Mm7\|chr2 (127310094-127309643)

	386-858, gnl\|bosTau2\|chr10 (9010511-9010039)
	386-858, gnl\|Mm7\|chr2 (127318513-127318041)

	elu (0.385356)
	fbs (0.175346)
	thg (0.126791)
	spc (0.113366)
	eje (0.0988338)
	ldo (0.0970026)