Non-Coding RNA Search

Ss1.1-Mixn-0006c04.5

Sequence:


               
               CCCGCTGAAACGAACTTCAGTGGTCCGTTTTCAGTGGTGGGTGAACTTGGATGGCTTCGG
CCAGTCTTTTCCAAGCCTCAGGGGGGAACAGGGGTGGAGGTGCTTCAGAATCAATGCATC
TGAAAGGCATAAGTCTAAATGTAAAAGCTTTAAATTATGTAGAAATCTGCATACACCTGG
GACTCATTTATCTAACCTGTATGTAAGATGGACTTTCAAATGAGACAGGTTTATAAACCA
GGATCACTATTTCAATTTTTTTGTTTTTAAAGAAAATTAATACTGGTTTGCTCTTGGAGA
GAGATCTTTTGGAAATTTGCAAATGCATTTTTCCCCTGAGCAAGCGATTAACTAGAGAGG
AAAGTGCTTCGTCACGCACATTCACCAATGTCTAATTCCTTTCCTCGTCTTTCCCCCTGT
ACTTTCCATGCCTCAGGCAAGTCTGGGTTACCTTCAACCAACTGATCAATTCATAAGTAT
TTGTTTGTTAAAAACTTACTCTGTACCTAACGCTGTAAATAGAAAAAGAGCAACATCTCT
GTGAAAATATGTTGGGGTGAAAATTGCTAACTGGAAATATATTGATCTGATTTTTTACAA
AAACGAAACCCTATCCCATGGCCAATTAAAAGTGTTTCCTGCCCTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCTGAAACGAACTTCAGTGGTCCGTTTTCAGTGGTGGGTGAACTTGGATGGCTTCGG
CCAGTCTTTTCCAAGCCTCAGGGGGGAACAGGGGTGGAGGTGCTTCAGAATCAATGCATC
TGAAAGGCATAAGTCTAAATGTAAAAGCTTTAAATTATGTAGAAATCTGCATACACCTGG
GACTCATTTATCTAACCTGTATGTAAGATGGACTTTCAAATGAGACAGGTTTATAAACCA
GGATCACTATTTCAATTTTTTTGTTTTTAAAGAAAATTAATACTGGTTTGCTCTTGGAGA
GAGATCTTTTGGAAATTTGCAAATGCATTTTTCCCCTGAGCAAGCGATTAACTAGAGAGG
AAAGTGCTTCGTCACGCACATTCACCAATGTCTAATTCCTTTCCTCGTCTTTCCCCCTGT
ACTTTCCATGCCTCAGGCAAGTCTGGGTTACCTTCAACCAACTGATCAATTCATAAGTAT
TTGTTTGTTAAAAACTTACTCTGTACCTAACGCTGTAAATAGAAAAAGAGCAACATCTCT
GTGAAAATATGTTGGGGTGAAAATTGCTAACTGGAAATATATTGATCTGATTTTTTACAA
AAACGAAACCCTATCCCATGGCCAATTAAAAGTGTTTCCTGCCCTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               237-389, + strand, RNAz p=0.999391

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-389, + strand, RNAz p=0.999391

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               290-361, + strand, RNAmicro p=0.988164

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               290-361, + strand, RNAmicro p=0.988164

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-596, gnl|bosTau2|chr10 (55795924-55796498)
               

               
               2-596, gnl|Hg17|chr14 (69066710-69067960)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-596, gnl|bosTau2|chr10 (55795924-55796498)
               

               
               2-596, gnl|Hg17|chr14 (69066710-69067960)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbe (0.717703)
               

               
               mga (0.32041)
               

               
               cga (0.279096)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               pla (0.133672)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               mga (0.32041)
               

               
               cga (0.279096)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               pla (0.133672)

	2-596, gnl\|bosTau2\|chr10 (55795924-55796498)
	2-596, gnl\|Hg17\|chr14 (69066710-69067960)

	cbe (0.717703)
	mga (0.32041)
	cga (0.279096)
	mgp (0.230681)
	sag (0.182715)
	mgm (0.180343)
	pla (0.133672)