Non-Coding RNA Search

Ss1.1-Mixn-0006d11.5.5

Sequence:


               
               ACACGTGAGGACCTCTCCTGGCCCCGGCTCTTCCGTGACGCCCTGGGCTGTGCCCTGTGC
GCCCCGCCTTCTGCCCGCCCTCCCCACCGGAAGCTCGTGCTGGTCACACTGGGTCTCTGG
GCAGCCGCGTGGGCCCCCTTGGGGTCAGCTTCTGTCCCTCTGCTTTTCCTGCCGTTCATT
TACTCATTCAAATAGCAGTCACAGAACACGGACAGGTGTCATCCCTGGGTTAGGTGGTGG
GGACCCTGCATGAGAAGACAAGCCCTGCCCTTAAGGAGCGCACCTCTCAGCTGGGAAAGA
GGTTCAGGAGGGGGAAGAGGTTCAGGAGGGGGCTCCTGCCTCACTCCCTGCTGTCCCCCT
CTTCTGTGCCCAGACTTCCCTAGACACCTCACCCCTGTCCCATCCCTAACGTTTACCCAA
GCAAAGGGTCGGGGCAGAAACCTGGAGAGACAGAGGCTCTCGCCCCAACGGGAGAATCTG
ATGGTTTCCAAACGTGTCTTTCTAGGCAGGAGCAGGTGGGCAGGCAGCCAAGGCCCAGCA
GACTCCGGGGAACTGAGAGCCACAGCCCAGGGGAAGCCTGGGGCCGCTCCTCATTGGCTG
GAGCCTGGGGGCAGGGACAGCCCTCCCCTCTCCCCATGGTGCTATGCTGGGGTTGGGCAG
ACACTTCCTGGCTTGTCTCTGGTGGGTCCCCAGCCTTCGGTGGAGAACACTGATGATCGA
TCCCGCTGACATCCCTCCCTTTGCCACGAGTGGAAGATGTGGGATTTCTTATTTAAATGT
GGGACTCTGAGGAATTTTGTTAACTGGGGGTGTATTTTGGGAAAAATAAATGCCTTTGTA
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACGTGAGGACCTCTCCTGGCCCCGGCTCTTCCGTGACGCCCTGGGCTGTGCCCTGTGC
GCCCCGCCTTCTGCCCGCCCTCCCCACCGGAAGCTCGTGCTGGTCACACTGGGTCTCTGG
GCAGCCGCGTGGGCCCCCTTGGGGTCAGCTTCTGTCCCTCTGCTTTTCCTGCCGTTCATT
TACTCATTCAAATAGCAGTCACAGAACACGGACAGGTGTCATCCCTGGGTTAGGTGGTGG
GGACCCTGCATGAGAAGACAAGCCCTGCCCTTAAGGAGCGCACCTCTCAGCTGGGAAAGA
GGTTCAGGAGGGGGAAGAGGTTCAGGAGGGGGCTCCTGCCTCACTCCCTGCTGTCCCCCT
CTTCTGTGCCCAGACTTCCCTAGACACCTCACCCCTGTCCCATCCCTAACGTTTACCCAA
GCAAAGGGTCGGGGCAGAAACCTGGAGAGACAGAGGCTCTCGCCCCAACGGGAGAATCTG
ATGGTTTCCAAACGTGTCTTTCTAGGCAGGAGCAGGTGGGCAGGCAGCCAAGGCCCAGCA
GACTCCGGGGAACTGAGAGCCACAGCCCAGGGGAAGCCTGGGGCCGCTCCTCATTGGCTG
GAGCCTGGGGGCAGGGACAGCCCTCCCCTCTCCCCATGGTGCTATGCTGGGGTTGGGCAG
ACACTTCCTGGCTTGTCTCTGGTGGGTCCCCAGCCTTCGGTGGAGAACACTGATGATCGA
TCCCGCTGACATCCCTCCCTTTGCCACGAGTGGAAGATGTGGGATTTCTTATTTAAATGT
GGGACTCTGAGGAATTTTGTTAACTGGGGGTGTATTTTGGGAAAAATAAATGCCTTTGTA
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               378-492, - strand, RNAz p=0.984716
               

               
               608-716, - strand, RNAz p=0.87363

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-492, - strand, RNAz p=0.984716
               

               
               608-716, - strand, RNAz p=0.87363

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-583, gnl|bosTau2|chr10 (12113452-12112895)
               

               
               1-583, gnl|Hg17|chr15 (71793051-71793634)
               


               
               602-844, gnl|bosTau2|chr10 (12112903-12112653)
               

               
               602-844, gnl|canFam2|chr30 (39988275-39988526)
               

               
               602-844, gnl|echTel1|scaffold_311965 (57428-57647)
               

               
               602-844, gnl|hg17|chr15 (71793577-71793857)
               

               
               602-844, gnl|Hg17|chr15 (71793622-71793908)
               

               
               602-844, gnl|loxAfr1|scaffold_61033 (4011-4296)
               

               
               602-844, gnl|mm7|chr9 (58553399-58553143)
               

               
               602-844, gnl|Mm7|chr9 (58553314-58552967)
               

               
               602-844, gnl|panTro1|chr16_random (20923053-20923333)
               

               
               602-844, gnl|rheMac2|chr7 (52398724-52399004)
               

               
               602-844, gnl|rn3|chr8 (62350480-62350260)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-583, gnl|bosTau2|chr10 (12113452-12112895)
               

               
               1-583, gnl|Hg17|chr15 (71793051-71793634)
               


               
               602-844, gnl|bosTau2|chr10 (12112903-12112653)
               

               
               602-844, gnl|canFam2|chr30 (39988275-39988526)
               

               
               602-844, gnl|echTel1|scaffold_311965 (57428-57647)
               

               
               602-844, gnl|hg17|chr15 (71793577-71793857)
               

               
               602-844, gnl|Hg17|chr15 (71793622-71793908)
               

               
               602-844, gnl|loxAfr1|scaffold_61033 (4011-4296)
               

               
               602-844, gnl|mm7|chr9 (58553399-58553143)
               

               
               602-844, gnl|Mm7|chr9 (58553314-58552967)
               

               
               602-844, gnl|panTro1|chr16_random (20923053-20923333)
               

               
               602-844, gnl|rheMac2|chr7 (52398724-52399004)
               

               
               602-844, gnl|rn3|chr8 (62350480-62350260)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               nje (0.33184)
               

               
               nca (0.273748)
               

               
               ecc (0.23007)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nje (0.33184)
               

               
               nca (0.273748)
               

               
               ecc (0.23007)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	378-492, - strand, RNAz p=0.984716
	608-716, - strand, RNAz p=0.87363

	1-583, gnl\|bosTau2\|chr10 (12113452-12112895)
	1-583, gnl\|Hg17\|chr15 (71793051-71793634)

	602-844, gnl\|bosTau2\|chr10 (12112903-12112653)
	602-844, gnl\|canFam2\|chr30 (39988275-39988526)
	602-844, gnl\|echTel1\|scaffold_311965 (57428-57647)
	602-844, gnl\|hg17\|chr15 (71793577-71793857)
	602-844, gnl\|Hg17\|chr15 (71793622-71793908)
	602-844, gnl\|loxAfr1\|scaffold_61033 (4011-4296)
	602-844, gnl\|mm7\|chr9 (58553399-58553143)
	602-844, gnl\|Mm7\|chr9 (58553314-58552967)
	602-844, gnl\|panTro1\|chr16_random (20923053-20923333)
	602-844, gnl\|rheMac2\|chr7 (52398724-52399004)
	602-844, gnl\|rn3\|chr8 (62350480-62350260)

	elu (0.385356)
	nje (0.33184)
	nca (0.273748)
	ecc (0.23007)
	nep (0.183925)
	fbs (0.175346)
	cst (0.140036)
	hlv (0.139256)
	cov (0.132153)
	eep (0.122564)
	med (0.116252)