Non-Coding RNA Search

Ss1.1-Mixn-0006e12.5

Sequence:


               
               TTGGAGGTGCCGGACGAGGCGGAGAGCGCCGAGGCCGGGGCTGTGACCTCGGAGGCGGCC
TGGGCGGTGGAGAGCGGTGCGGCAGCAGGTTCAACCCAGAAAAAGATGGCCCCGGTGGAG
GCCCCACTGATGACTGGACAGCCGGGCCCCGGCCACGGGAAGAAGTTGGGTCACCGGGGT
GTGGATGCATCTGGTGAAACCACCTACAAGAAGACCACATCCTCCACCCTGAAGGGGGCC
ATCCAGCTGGGCATCGGCTACACCGTGGGCAACCTGAGCTCCAAGCCGGAGCGCGACGTG
CTCATGCAGGACTTCTATGTTGTAGAGAGCATCTTCTTTCCCAGTGAAGGCAGCAACCTC
ACCCCCGCTCATCACTTCCAGGACTTCAGGTTCAAGACCTATGCACCTGTCGCCTTCCGC
TACTTCCGGGAACTCTTTGGGATCCGGCCAGATGACTACTTGTACTCGCTGTGCAATGAG
CCACTCATCGAGCTGTCCAACCCTGGTGCCAGCGGCTCCCTCTTCTATGTCACCAGCGAC
GATGAGTTCATCATCAAGACTGTGATGCATAAGGAGGCTGAGTTCCTGCAAAAGCTGCTG
CCTGGATACTACATGAACCTCAACCAGAACCCGAGGACGCTGCTGCCCAAGTTCTACGGG
CTGTACTGCGTGCAGTCGGGTGGCAAGAACATCCGCGTGGTGGTGATGAACAACGTGCTG
CCACGCGTGGTCAAGATGCACCTCAAGTTCGACCTCAAGGGCTCCACATACAAGCGGCGG
GCCAGCAAGAAGGAGAAGGAGAAGAGCATCCCCACCTACAAGGACCTGGACTTTATCCAG
GATATGCCCGAGGGGCTCATGCTCGACGCTGACACTTTCTCCGCCCTGGTCAAGACGCTG
CAGCGCGACTGCCTGGTGCTGGAGAGCTTCAAGATCATGGACTACAGCCTGCTTCTGGGC
GTGCACAACATCGACCAGCAGGAGCGGGAGCGGCAGGCTGAAGGCGCCCAGAGCACCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGAGGTGCCGGACGAGGCGGAGAGCGCCGAGGCCGGGGCTGTGACCTCGGAGGCGGCC
TGGGCGGTGGAGAGCGGTGCGGCAGCAGGTTCAACCCAGAAAAAGATGGCCCCGGTGGAG
GCCCCACTGATGACTGGACAGCCGGGCCCCGGCCACGGGAAGAAGTTGGGTCACCGGGGT
GTGGATGCATCTGGTGAAACCACCTACAAGAAGACCACATCCTCCACCCTGAAGGGGGCC
ATCCAGCTGGGCATCGGCTACACCGTGGGCAACCTGAGCTCCAAGCCGGAGCGCGACGTG
CTCATGCAGGACTTCTATGTTGTAGAGAGCATCTTCTTTCCCAGTGAAGGCAGCAACCTC
ACCCCCGCTCATCACTTCCAGGACTTCAGGTTCAAGACCTATGCACCTGTCGCCTTCCGC
TACTTCCGGGAACTCTTTGGGATCCGGCCAGATGACTACTTGTACTCGCTGTGCAATGAG
CCACTCATCGAGCTGTCCAACCCTGGTGCCAGCGGCTCCCTCTTCTATGTCACCAGCGAC
GATGAGTTCATCATCAAGACTGTGATGCATAAGGAGGCTGAGTTCCTGCAAAAGCTGCTG
CCTGGATACTACATGAACCTCAACCAGAACCCGAGGACGCTGCTGCCCAAGTTCTACGGG
CTGTACTGCGTGCAGTCGGGTGGCAAGAACATCCGCGTGGTGGTGATGAACAACGTGCTG
CCACGCGTGGTCAAGATGCACCTCAAGTTCGACCTCAAGGGCTCCACATACAAGCGGCGG
GCCAGCAAGAAGGAGAAGGAGAAGAGCATCCCCACCTACAAGGACCTGGACTTTATCCAG
GATATGCCCGAGGGGCTCATGCTCGACGCTGACACTTTCTCCGCCCTGGTCAAGACGCTG
CAGCGCGACTGCCTGGTGCTGGAGAGCTTCAAGATCATGGACTACAGCCTGCTTCTGGGC
GTGCACAACATCGACCAGCAGGAGCGGGAGCGGCAGGCTGAAGGCGCCCAGAGCACCGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57098807|ref|XP_533053.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57098807|ref|XP_533053.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               212-344, gnl|bosTau2|chr7 (17071136-17071004)
               

               
               212-344, gnl|Hg17|chr19 (3613001-3612869)
               

               
               212-344, gnl|Mm7|chr10 (81097694-81097826)
               


               
               615-918, gnl|bosTau2|chr7 (17068188-17067885)
               

               
               615-918, gnl|Hg17|chr19 (3604588-3604285)
               

               
               615-918, gnl|Mm7|chr10 (81100944-81101247)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               212-344, gnl|bosTau2|chr7 (17071136-17071004)
               

               
               212-344, gnl|Hg17|chr19 (3613001-3612869)
               

               
               212-344, gnl|Mm7|chr10 (81097694-81097826)
               


               
               615-918, gnl|bosTau2|chr7 (17068188-17067885)
               

               
               615-918, gnl|Hg17|chr19 (3604588-3604285)
               

               
               615-918, gnl|Mm7|chr10 (81100944-81101247)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	212-344, gnl\|bosTau2\|chr7 (17071136-17071004)
	212-344, gnl\|Hg17\|chr19 (3613001-3612869)
	212-344, gnl\|Mm7\|chr10 (81097694-81097826)

	615-918, gnl\|bosTau2\|chr7 (17068188-17067885)
	615-918, gnl\|Hg17\|chr19 (3604588-3604285)
	615-918, gnl\|Mm7\|chr10 (81100944-81101247)