Non-Coding RNA Search

Ss1.1-Mixn-0006g03.5

Sequence:


               
               CCATCCTAAGCAAACTCTCAAAGCTGGTCCTCCTGACTGGATCTCTTTACACACAGTTCC
CACCCCAAAGGGGAATGAGGGGCCTAGATAAGAGTAAGGGCCCTTCTTTCTCATAGTGTG
GGAGGGGGCTGTGCTCCTCACCTCCAGGGCGTTGAGGGGCTAAGACTAGGTTGGGTCTTC
TCTTCTGCCTGGTTCCTTCATGAAGAGGGCTCCCTCCAGGGAAGGCCCCTCATCACTTCA
AGGCCTCTCTTCTTTGGCTAGAGTCCCCCACCTTCCCACAGCCCTTGCAGCCTCTGGCCT
GGCTTTCCAGCCTAAGCCCAGTTGAAAATCCCACTTTCACCACTTGCTTTGGAATGTCTG
CACTTATAGGGAACCGTTGCTCAGAGGACTGCTCGGAGTGGGGGAGGGGGGCCCACAGAG
ACCAAGTATATGGAGGGAGGGCCCCAAATTAGTAAACATTTCATGTTTCTAGCACCGTGA
CTGCTTTTAAAAAGCAAGCCTTTGTCAGGTCTACCAGAGCAGCTGATAAGCCTGCAGAAC
AGGGAGGCATTGTGTCCAAAGCCAATGCCAGAGCCTGGTTCCTAAATTGTCTGGGAGCCC
AGTATCCGCCTACAGGAATCTAGGAAGTAGAACAGAATCACCATGGGCCTGTTCTGAGAC
CAGCTTCCCTTCACTATAGCCTGGCAGTCTGACCTGGAGTCACCCTCAACCAAGGGACCT
GGTTTTCCCTTCCTCGTTGTTACACCCCCCCCCTAAACTGGGGAGGTTAAAATGGGTATC
AATGCTAATTATTTCCAGGGTAAACACAAAACCAGAAGTTTCTTACTTTCTCTGTAGCCT
GCTATGAAGGAAAATGACAAGTGAAAAAAATAAATGTGTACTACACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCCTAAGCAAACTCTCAAAGCTGGTCCTCCTGACTGGATCTCTTTACACACAGTTCC
CACCCCAAAGGGGAATGAGGGGCCTAGATAAGAGTAAGGGCCCTTCTTTCTCATAGTGTG
GGAGGGGGCTGTGCTCCTCACCTCCAGGGCGTTGAGGGGCTAAGACTAGGTTGGGTCTTC
TCTTCTGCCTGGTTCCTTCATGAAGAGGGCTCCCTCCAGGGAAGGCCCCTCATCACTTCA
AGGCCTCTCTTCTTTGGCTAGAGTCCCCCACCTTCCCACAGCCCTTGCAGCCTCTGGCCT
GGCTTTCCAGCCTAAGCCCAGTTGAAAATCCCACTTTCACCACTTGCTTTGGAATGTCTG
CACTTATAGGGAACCGTTGCTCAGAGGACTGCTCGGAGTGGGGGAGGGGGGCCCACAGAG
ACCAAGTATATGGAGGGAGGGCCCCAAATTAGTAAACATTTCATGTTTCTAGCACCGTGA
CTGCTTTTAAAAAGCAAGCCTTTGTCAGGTCTACCAGAGCAGCTGATAAGCCTGCAGAAC
AGGGAGGCATTGTGTCCAAAGCCAATGCCAGAGCCTGGTTCCTAAATTGTCTGGGAGCCC
AGTATCCGCCTACAGGAATCTAGGAAGTAGAACAGAATCACCATGGGCCTGTTCTGAGAC
CAGCTTCCCTTCACTATAGCCTGGCAGTCTGACCTGGAGTCACCCTCAACCAAGGGACCT
GGTTTTCCCTTCCTCGTTGTTACACCCCCCCCCTAAACTGGGGAGGTTAAAATGGGTATC
AATGCTAATTATTTCCAGGGTAAACACAAAACCAGAAGTTTCTTACTTTCTCTGTAGCCT
GCTATGAAGGAAAATGACAAGTGAAAAAAATAAATGTGTACTACACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-225, + strand, RNAz p=0.997645

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-225, + strand, RNAz p=0.997645

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               72-202, + strand, RNAmicro p=0.95217

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               72-202, + strand, RNAmicro p=0.95217

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC008928, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC008928, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-888, gnl|bosTau2|chr22 (11293743-11294624)
               

               
               1-888, gnl|Hg17|chr3 (39114008-39113165)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr22 (11293743-11294624)
               

               
               1-888, gnl|Hg17|chr3 (39114008-39113165)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               gul (0.355177)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lnt (0.142308)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lnt (0.142308)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	1-888, gnl\|bosTau2\|chr22 (11293743-11294624)
	1-888, gnl\|Hg17\|chr3 (39114008-39113165)

	gul (0.355177)
	tes (0.207814)
	ill (0.175593)
	rec (0.17307)
	lnt (0.142308)
	med (0.116252)
	eje (0.0988338)