Non-Coding RNA Search

Ss1.1-Mixn-0006g19.5

Sequence:


               
               GAGGCCAACGCTGCCCGAAAACTTACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAG
CTTAAAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTTCGAAATTTGAGC
AACCCAGCCAAGAAGTTCAAGATTGAGGCCAATGCTGGGCAACTGTACCTGACAGGGGTG
GTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAGGCCCAGAAG
AAATTTAAGCGTCTTATGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACAAAG
GGAGATGATGATGAGGAATCTGATGAGGAAGCTGTGAAGAAAACCAACAAATGTGTACTT
GTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAAGTTCAAACAGTGCCCT
ACAGAGAACATGGCTCGGGAGCATTTCAAAAAGCATGGGGCTGAGCACTACTGGGACCTT
GCACTGAGTGAATCTGTGTTGGAGTCCACCGACTGAGACTACTGCAAGCCCTTGCCCCTC
CCCTCTTGCCTTTGTCTCTTCAGTCCTCTTCCTTATTCTCCTTCCTAGCCCGGCCCCACT
TGTATGTGATCTCAGAACTGTGCCAAGCTGACATTGGAACTGAGGGAGAACACCTTGCTT
CCTTCCCTAGTCAGCCTGGTGCTGCCCATTATTCCCCTTATGTGAATATGATTAAAGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCAACGCTGCCCGAAAACTTACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAG
CTTAAAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTTCGAAATTTGAGC
AACCCAGCCAAGAAGTTCAAGATTGAGGCCAATGCTGGGCAACTGTACCTGACAGGGGTG
GTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAGGCCCAGAAG
AAATTTAAGCGTCTTATGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACAAAG
GGAGATGATGATGAGGAATCTGATGAGGAAGCTGTGAAGAAAACCAACAAATGTGTACTT
GTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAAGTTCAAACAGTGCCCT
ACAGAGAACATGGCTCGGGAGCATTTCAAAAAGCATGGGGCTGAGCACTACTGGGACCTT
GCACTGAGTGAATCTGTGTTGGAGTCCACCGACTGAGACTACTGCAAGCCCTTGCCCCTC
CCCTCTTGCCTTTGTCTCTTCAGTCCTCTTCCTTATTCTCCTTCCTAGCCCGGCCCCACT
TGTATGTGATCTCAGAACTGTGCCAAGCTGACATTGGAACTGAGGGAGAACACCTTGCTT
CCTTCCCTAGTCAGCCTGGTGCTGCCCATTATTCCCCTTATGTGAATATGATTAAAGAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               567-684, - strand, RNAz p=0.866167

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               567-684, - strand, RNAz p=0.866167

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               103-224, gnl|bosTau2|chr3 (17131729-17131608)
               

               
               103-224, gnl|Hg17|chr1 (147131565-147131686)
               

               
               103-224, gnl|Mm7|chr3 (95708154-95708033)
               


               
               368-720, gnl|bosTau2|chr3 (17128112-17127759)
               

               
               368-720, gnl|Hg17|chr1 (147138380-147138734)
               

               
               368-720, gnl|Mm7|chr3 (95704917-95704579)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-224, gnl|bosTau2|chr3 (17131729-17131608)
               

               
               103-224, gnl|Hg17|chr1 (147131565-147131686)
               

               
               103-224, gnl|Mm7|chr3 (95708154-95708033)
               


               
               368-720, gnl|bosTau2|chr3 (17128112-17127759)
               

               
               368-720, gnl|Hg17|chr1 (147138380-147138734)
               

               
               368-720, gnl|Mm7|chr3 (95704917-95704579)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbr (0.255951)
               

               
               ece (0.229305)
               

               
               ssp (0.13552)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.255951)
               

               
               ece (0.229305)
               

               
               ssp (0.13552)
               

               
               med (0.116252)

	103-224, gnl\|bosTau2\|chr3 (17131729-17131608)
	103-224, gnl\|Hg17\|chr1 (147131565-147131686)
	103-224, gnl\|Mm7\|chr3 (95708154-95708033)

	368-720, gnl\|bosTau2\|chr3 (17128112-17127759)
	368-720, gnl\|Hg17\|chr1 (147138380-147138734)
	368-720, gnl\|Mm7\|chr3 (95704917-95704579)