Non-Coding RNA Search

Ss1.1-Mixn-0006j07.5

Sequence:


               
               AGGGGGATGGGGCCATGGCCCTGGGGAGGGAACAGAAAGGCCTGGAACGTGCTGGTCTGG
GGAGAGGATGTGTCTGAGGGAAGGAGGGGGCGGCCTCTGCAGGGGTGCTGCTGGGCACGT
GGGAGAGGTGGCAGATGGAGTGTTGCTGGAAGCCGAGCCTTTGCCGACCCCCCTGCACTG
CTGGGAGCCCCTCGTCCCCCGTGCTGGGGCCGAGCGGGCACGTTGCTCAGCGGCAGGGCT
TGGTGGGATGGATTCTGTCTTCTGCAGGCCACTTGTAGGGTACGTGCTGTCCTCCGAGGG
AGCCAGTGGGGCCTGCGAGGGGCAGAGGGATGGGCACCGTGAGCATCTGGGTCAGGCTGG
GATGTGGGCCCTGCTGTCACCGAGTCTCCAAGTCCCCTGACAACTCCGGGACTCTCCAGA
TGTCCTTGTGAGTCACGTGGGGCCTGGCTGTCCCCTTCCTCAGCTTCTTGGTCCTGAGGG
TGAGGGTCAAGCCAAGGCCATTCCCAGACCCCCTCCCCTGCTGCTGGAGGGGAGGGCAGG
CAGGGTGGGGGCCGACTTCTTCAGCGTGCCATCCTCACCCCCACCCCCCAGCCCCAGCCC
CGCCTCCTCCACCTCCTCTGCTTCCTGGGCCAGGGTCTTGGACAGGACACGCGGCGCTGG
CTGGTGCTCAGGGACCCCTCCTGGTGCCCCCCAGCCCTAATCTCAATGCCTCACTAATCT
CTTCTACCAACACATTCCGTCTTAAAATGCTCTCTTCTAGTGCCTTCTTTTGGGGTTTTC
CAGTCATCCCTCCCAGATATTGTATTGAAAATATGATGCAAACTGTTTAAGCTTCTACTA
ATCAATAAATGCTTTATTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGGATGGGGCCATGGCCCTGGGGAGGGAACAGAAAGGCCTGGAACGTGCTGGTCTGG
GGAGAGGATGTGTCTGAGGGAAGGAGGGGGCGGCCTCTGCAGGGGTGCTGCTGGGCACGT
GGGAGAGGTGGCAGATGGAGTGTTGCTGGAAGCCGAGCCTTTGCCGACCCCCCTGCACTG
CTGGGAGCCCCTCGTCCCCCGTGCTGGGGCCGAGCGGGCACGTTGCTCAGCGGCAGGGCT
TGGTGGGATGGATTCTGTCTTCTGCAGGCCACTTGTAGGGTACGTGCTGTCCTCCGAGGG
AGCCAGTGGGGCCTGCGAGGGGCAGAGGGATGGGCACCGTGAGCATCTGGGTCAGGCTGG
GATGTGGGCCCTGCTGTCACCGAGTCTCCAAGTCCCCTGACAACTCCGGGACTCTCCAGA
TGTCCTTGTGAGTCACGTGGGGCCTGGCTGTCCCCTTCCTCAGCTTCTTGGTCCTGAGGG
TGAGGGTCAAGCCAAGGCCATTCCCAGACCCCCTCCCCTGCTGCTGGAGGGGAGGGCAGG
CAGGGTGGGGGCCGACTTCTTCAGCGTGCCATCCTCACCCCCACCCCCCAGCCCCAGCCC
CGCCTCCTCCACCTCCTCTGCTTCCTGGGCCAGGGTCTTGGACAGGACACGCGGCGCTGG
CTGGTGCTCAGGGACCCCTCCTGGTGCCCCCCAGCCCTAATCTCAATGCCTCACTAATCT
CTTCTACCAACACATTCCGTCTTAAAATGCTCTCTTCTAGTGCCTTCTTTTGGGGTTTTC
CAGTCATCCCTCCCAGATATTGTATTGAAAATATGATGCAAACTGTTTAAGCTTCTACTA
ATCAATAAATGCTTTATTTAAAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               22-428, gnl|bosTau2|chr11 (74511972-74512389)
               

               
               22-428, gnl|Hg17|chr9 (127348086-127347597)
               


               
               501-862, gnl|bosTau2|chr11 (74512471-74512831)
               

               
               501-862, gnl|Hg17|chr9 (127347514-127347176)
               

               
               501-862, gnl|Mm7|chr2 (32932256-32932560)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-428, gnl|bosTau2|chr11 (74511972-74512389)
               

               
               22-428, gnl|Hg17|chr9 (127348086-127347597)
               


               
               501-862, gnl|bosTau2|chr11 (74512471-74512831)
               

               
               501-862, gnl|Hg17|chr9 (127347514-127347176)
               

               
               501-862, gnl|Mm7|chr2 (32932256-32932560)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               eep (0.490256)
               

               
               sin (0.349895)
               

               
               nca (0.273748)
               

               
               clu (0.239292)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.490256)
               

               
               sin (0.349895)
               

               
               nca (0.273748)
               

               
               clu (0.239292)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

	22-428, gnl\|bosTau2\|chr11 (74511972-74512389)
	22-428, gnl\|Hg17\|chr9 (127348086-127347597)

	501-862, gnl\|bosTau2\|chr11 (74512471-74512831)
	501-862, gnl\|Hg17\|chr9 (127347514-127347176)
	501-862, gnl\|Mm7\|chr2 (32932256-32932560)

	eep (0.490256)
	sin (0.349895)
	nca (0.273748)
	clu (0.239292)
	fli (0.202881)
	nlu (0.191681)
	ton (0.1755)
	duo (0.172801)
	pty (0.142714)
	cst (0.140036)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)