Non-Coding RNA Search

Ss1.1-Mixn-0006j24.5

Sequence:


               
               AGAAATTTGCCACAGGCAGTGTGCCCATCCCCTGGCAGAACGAGATGGTGGAGACTGAGT
GCTTCCAGGAGCTAAATGTCTTTGGGATAGATGGCTCAGTTCCCCCAGACCTGGACTGGA
AGGGCCAGCCGCCCGCACCTCCCAAGAAGGGACTGCTGCAGAGGCTATTCAGTCGCCAGG
ACTGCTGTGGGAACTGCAGCGACAGCGAGGAAGAGCTTCCAGCCCGCCTCGAGCTCCCCA
CCCGCCTCTAGCCCCCAGCCTGAGGCCCCCCCGGGCGGCTGGCGGTAGCAGCTACTCGGA
GCGCTGTTTACAGTTTTGCACAGTGGTCTTCCCCATTGTCCACTCAAGTCGTGGCCCGGG
GAACGCAGCCAAGTGGTCCCCAGTGCCCTCTGCCCCTCAGCCCCTGGTCTGGCTGAGTTT
GGCAAGGCCTGGGCTGTCCCTGGGACAAAGGTGCGTCCCTTCGGCTCTTGTCTGTGGAGC
TCGGGGCTTTCTGTATTTATGTCTTTGTACGAATGTATATAGCGACCAGAGTGTTCTTAA
GACCCACCCTGGAGCAGGCGGAGGGGCCGCTGCCAAACTCCAGGCTCCTCAGGCGCGGCT
TGGACGGGTGACACTGGGCCAGGCCAGGCCCCTGAGCCCCCAGCACTGTGCTTGCCACCG
CTGACCTCTGAGTGAGACTCGTGCCTGCCCCTGCCGCCCTGGGTTCAGGCTGTCTGCCTC
TGGGGCCCAATGCTGTTCCTTCTCAGCACTTGTCAGAGCTGGATCTGGGGCCTCCGTGTC
CCCTAGGCCTGTGCCAAAGTGTGACCAGAGATTGGGCTGACCCTGGGACCCCTCAGTCCA
CTGCCCAGGCTGTTCCAGATGGGTCTGCCTCTGCCTTCCAGCTCCCGGGGCACCTCGTCC
CTCTTGCAGAAACACCCCATCCCAGGCCATAAGAAGGTGGGGCAGGGATGTCCCTGGCCA
ACCCTCAAACATTCCAGACTCCCCTCATAACAACAAACACATGTGCCCAGCAATAATCCA
CCCCTCCCTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGTGAAGGGGGAGCAGGC
TGAGGCTGTGTGCCTGCACCCCCAGGCCCCAGCCCTGGTCCTTCCCAGACTGTGATGGCC
ACCCTGGTCCCAGTGTTAGGGTAGCATGGGATTACAGGGCCCCAGTTTTTCCATATTTAA
AGCCAATTTTTATTACTCATTTCGTCCAGTGTAAGCTGCCATGTGTCTCTTTGTGAATAC
AGTCTGAGCACAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGGGGGGGGGGGGCTTTTTTTATTTTTTTGGGGGGGGGGCAAATT
TTCCCCCCCCCCTTTTTTTTTAAAAGGGGGGGCCCTTTTGGGGGGGTTTTTAAAAGGGGG
GGGGGGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATTTGCCACAGGCAGTGTGCCCATCCCCTGGCAGAACGAGATGGTGGAGACTGAGT
GCTTCCAGGAGCTAAATGTCTTTGGGATAGATGGCTCAGTTCCCCCAGACCTGGACTGGA
AGGGCCAGCCGCCCGCACCTCCCAAGAAGGGACTGCTGCAGAGGCTATTCAGTCGCCAGG
ACTGCTGTGGGAACTGCAGCGACAGCGAGGAAGAGCTTCCAGCCCGCCTCGAGCTCCCCA
CCCGCCTCTAGCCCCCAGCCTGAGGCCCCCCCGGGCGGCTGGCGGTAGCAGCTACTCGGA
GCGCTGTTTACAGTTTTGCACAGTGGTCTTCCCCATTGTCCACTCAAGTCGTGGCCCGGG
GAACGCAGCCAAGTGGTCCCCAGTGCCCTCTGCCCCTCAGCCCCTGGTCTGGCTGAGTTT
GGCAAGGCCTGGGCTGTCCCTGGGACAAAGGTGCGTCCCTTCGGCTCTTGTCTGTGGAGC
TCGGGGCTTTCTGTATTTATGTCTTTGTACGAATGTATATAGCGACCAGAGTGTTCTTAA
GACCCACCCTGGAGCAGGCGGAGGGGCCGCTGCCAAACTCCAGGCTCCTCAGGCGCGGCT
TGGACGGGTGACACTGGGCCAGGCCAGGCCCCTGAGCCCCCAGCACTGTGCTTGCCACCG
CTGACCTCTGAGTGAGACTCGTGCCTGCCCCTGCCGCCCTGGGTTCAGGCTGTCTGCCTC
TGGGGCCCAATGCTGTTCCTTCTCAGCACTTGTCAGAGCTGGATCTGGGGCCTCCGTGTC
CCCTAGGCCTGTGCCAAAGTGTGACCAGAGATTGGGCTGACCCTGGGACCCCTCAGTCCA
CTGCCCAGGCTGTTCCAGATGGGTCTGCCTCTGCCTTCCAGCTCCCGGGGCACCTCGTCC
CTCTTGCAGAAACACCCCATCCCAGGCCATAAGAAGGTGGGGCAGGGATGTCCCTGGCCA
ACCCTCAAACATTCCAGACTCCCCTCATAACAACAAACACATGTGCCCAGCAATAATCCA
CCCCTCCCTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGTGAAGGGGGAGCAGGC
TGAGGCTGTGTGCCTGCACCCCCAGGCCCCAGCCCTGGTCCTTCCCAGACTGTGATGGCC
ACCCTGGTCCCAGTGTTAGGGTAGCATGGGATTACAGGGCCCCAGTTTTTCCATATTTAA
AGCCAATTTTTATTACTCATTTCGTCCAGTGTAAGCTGCCATGTGTCTCTTTGTGAATAC
AGTCTGAGCACAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGGGGGGGGGGGGCTTTTTTTATTTTTTTGGGGGGGGGGCAAATT
TTCCCCCCCCCCTTTTTTTTTAAAAGGGGGGGCCCTTTTGGGGGGGTTTTTAAAAGGGGG
GGGGGGGGGGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               336-453, - strand, RNAz p=0.847481
               

               
               558-669, - strand, RNAz p=0.868358

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               336-453, - strand, RNAz p=0.847481
               

               
               558-669, - strand, RNAz p=0.868358

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               177-901, gnl|bosTau2|chr7 (21715237-21715963)
               

               
               177-901, gnl|Hg17|chr5 (176801341-176802093)
               

               
               177-901, gnl|Mm7|chr13 (54540487-54541225)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-901, gnl|bosTau2|chr7 (21715237-21715963)
               

               
               177-901, gnl|Hg17|chr5 (176801341-176802093)
               

               
               177-901, gnl|Mm7|chr13 (54540487-54541225)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               lnt (0.426925)
               

               
               cly (0.361925)
               

               
               cag (0.302389)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.426925)
               

               
               cly (0.361925)
               

               
               cag (0.302389)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	336-453, - strand, RNAz p=0.847481
	558-669, - strand, RNAz p=0.868358

	177-901, gnl\|bosTau2\|chr7 (21715237-21715963)
	177-901, gnl\|Hg17\|chr5 (176801341-176802093)
	177-901, gnl\|Mm7\|chr13 (54540487-54541225)

	lnt (0.426925)
	cly (0.361925)
	cag (0.302389)
	med (0.232504)
	fty (0.17584)
	ill (0.175593)
	mcp (0.170648)
	fhi (0.169578)
	csp (0.161186)
	cst (0.140036)
	ssp (0.13552)
	ese (0.126502)
	eru (0.120048)
	ecc (0.115035)