Ss1.1-Mixn-0006k07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACTCGCAGCAGAAGCGGTATGTTCCAGTCAAAGGAGACCATGTGATTGGCATAGTTACC GCTAAATCTGGAGATATATTCAAAGTTGATGTTGGAGGGAGTGAGCCAGCTTCTTTATCT TACTTGGCATTTGAAGGTGCAACTAAAAGAAACAGACCAAATGTTCAGATTGGAGATCTC ATCTATGGCCAATTTGTAGTTGCTAATAAAGATATGGAACCAGAGATGGTCTGTATTGAC AGCTGTGGACGAGCCAACGGAATGGGTGTGATTGGACAAGATGGTCTGCTTTTTAAAGTG ACTTTGGGCTTAGTTAGAAAGCTGCTAGCTCCAAACTGTGAAATCCTACAAGAAGTGGGA AAACTCTACCCACTTGAGATAGTATTTGGAATGAATGGAAGAATATGGGTTAAAGCAAAA ACCATTCAGCAAACTTTGATTTTGGCAAATGTTTTAGAAGCTTGTGAACACATGACAGCA GATCAAAGAAAACAGATCTTCTCCAGATTGGCAGAAAGTTGATCTATGTGGATCAGCTGA GCCAAGAGACTGTGGGTTTCTTGGGGGAAACGTTTCTCAGATGGACTTTTCCCCATTAAA TCTTCAAAAGACAAGATGTGACTGTACATATTGTCTCATTAGAGTGCTAAATAAAATATT TTTATAAAGTTTCTGGTTGCCACCCATGTTCTTGTGGGTGAAAGAAAGCAGTGTAAAAAT AATGATGTAGTTTTCTGTTTTTTACAATAAAGTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACTCGCAGCAGAAGCGGTATGTTCCAGTCAAAGGAGACCATGTGATTGGCATAGTTACC GCTAAATCTGGAGATATATTCAAAGTTGATGTTGGAGGGAGTGAGCCAGCTTCTTTATCT TACTTGGCATTTGAAGGTGCAACTAAAAGAAACAGACCAAATGTTCAGATTGGAGATCTC ATCTATGGCCAATTTGTAGTTGCTAATAAAGATATGGAACCAGAGATGGTCTGTATTGAC AGCTGTGGACGAGCCAACGGAATGGGTGTGATTGGACAAGATGGTCTGCTTTTTAAAGTG ACTTTGGGCTTAGTTAGAAAGCTGCTAGCTCCAAACTGTGAAATCCTACAAGAAGTGGGA AAACTCTACCCACTTGAGATAGTATTTGGAATGAATGGAAGAATATGGGTTAAAGCAAAA ACCATTCAGCAAACTTTGATTTTGGCAAATGTTTTAGAAGCTTGTGAACACATGACAGCA GATCAAAGAAAACAGATCTTCTCCAGATTGGCAGAAAGTTGATCTATGTGGATCAGCTGA GCCAAGAGACTGTGGGTTTCTTGGGGGAAACGTTTCTCAGATGGACTTTTCCCCATTAAA TCTTCAAAAGACAAGATGTGACTGTACATATTGTCTCATTAGAGTGCTAAATAAAATATT TTTATAAAGTTTCTGGTTGCCACCCATGTTCTTGTGGGTGAAAGAAAGCAGTGTAAAAAT AATGATGTAGTTTTCTGTTTTTTACAATAAAGTTTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 18-168, gnl|bosTau2|chr8 (28974617-28974467) | |
| 18-168, gnl|canFam2|chr11 (57105640-57105732) | |
| 18-168, gnl|canFam2|chr11 (57105614-57105749) | |
| 18-168, gnl|danRer3|chrNA (28118464-28118367) | |
| 18-168, gnl|danRer3|chrNA (28118465-28118350) | |
| 18-168, gnl|dasNov1|scaffold_36471 (10301-10398) | |
| 18-168, gnl|dasNov1|scaffold_36471 (10280-10415) | |
| 18-168, gnl|echTel1|scaffold_291717 (10514-10422) | |
| 18-168, gnl|echTel1|scaffold_291717 (10540-10405) | |
| 18-168, gnl|galGal2|chr6 (3847222-3847314) | |
| 18-168, gnl|galGal2|chr6 (3847215-3847331) | |
| 18-168, gnl|hg17|chr19 (7785163-7785260) | |
| 18-168, gnl|hg17|chr9 (37773889-37774024) | |
| 18-168, gnl|Hg17|chr9 (37774061-37773911) | |
| 18-168, gnl|loxAfr1|scaffold_1530 (8340-8248) | |
| 18-168, gnl|loxAfr1|scaffold_1530 (8366-8231) | |
| 18-168, gnl|mm7|chr4 (45333363-45333460) | |
| 18-168, gnl|mm7|chr4 (45333342-45333477) | |
| 18-168, gnl|Mm7|chr4 (45333514-45333364) | |
| 18-168, gnl|monDom2|scaffold_19 (10695834-10695931) | |
| 18-168, gnl|monDom2|scaffold_19 (10695815-10695948) | |
| 18-168, gnl|oryCun1|scaffold_60510 (1992-2085) | |
| 18-168, gnl|oryCun1|scaffold_60510 (1976-2102) | |
| 18-168, gnl|panTro1|chr11 (38508366-38508501) | |
| 18-168, gnl|panTro1|chr20 (8143003-8143100) | |
| 18-168, gnl|rheMac2|chr15 (39633805-39633670) | |
| 18-168, gnl|rheMac2|chr19 (7758859-7758957) | |
| 18-168, gnl|rn3|chr5 (61882920-61883017) | |
| 18-168, gnl|rn3|chr5 (61882909-61883034) | |
| 18-168, gnl|tetNig1|chrUn_random (47531124-47531221) | |
| 18-168, gnl|tetNig1|chrUn_random (47531111-47531238) | |
| 18-168, gnl|xenTro1|scaffold_595 (286566-286469) | |
| 18-168, gnl|xenTro1|scaffold_595 (286568-286452) | |
| 321-756, gnl|bosTau2|chr8 (28971368-28970925) | |
| 321-756, gnl|Hg17|chr9 (37770877-37770463) | |
| 321-756, gnl|Mm7|chr4 (45330842-45330438) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-168, gnl|bosTau2|chr8 (28974617-28974467) | |
| 18-168, gnl|canFam2|chr11 (57105640-57105732) | |
| 18-168, gnl|canFam2|chr11 (57105614-57105749) | |
| 18-168, gnl|danRer3|chrNA (28118464-28118367) | |
| 18-168, gnl|danRer3|chrNA (28118465-28118350) | |
| 18-168, gnl|dasNov1|scaffold_36471 (10301-10398) | |
| 18-168, gnl|dasNov1|scaffold_36471 (10280-10415) | |
| 18-168, gnl|echTel1|scaffold_291717 (10514-10422) | |
| 18-168, gnl|echTel1|scaffold_291717 (10540-10405) | |
| 18-168, gnl|galGal2|chr6 (3847222-3847314) | |
| 18-168, gnl|galGal2|chr6 (3847215-3847331) | |
| 18-168, gnl|hg17|chr19 (7785163-7785260) | |
| 18-168, gnl|hg17|chr9 (37773889-37774024) | |
| 18-168, gnl|Hg17|chr9 (37774061-37773911) | |
| 18-168, gnl|loxAfr1|scaffold_1530 (8340-8248) | |
| 18-168, gnl|loxAfr1|scaffold_1530 (8366-8231) | |
| 18-168, gnl|mm7|chr4 (45333363-45333460) | |
| 18-168, gnl|mm7|chr4 (45333342-45333477) | |
| 18-168, gnl|Mm7|chr4 (45333514-45333364) | |
| 18-168, gnl|monDom2|scaffold_19 (10695834-10695931) | |
| 18-168, gnl|monDom2|scaffold_19 (10695815-10695948) | |
| 18-168, gnl|oryCun1|scaffold_60510 (1992-2085) | |
| 18-168, gnl|oryCun1|scaffold_60510 (1976-2102) | |
| 18-168, gnl|panTro1|chr11 (38508366-38508501) | |
| 18-168, gnl|panTro1|chr20 (8143003-8143100) | |
| 18-168, gnl|rheMac2|chr15 (39633805-39633670) | |
| 18-168, gnl|rheMac2|chr19 (7758859-7758957) | |
| 18-168, gnl|rn3|chr5 (61882920-61883017) | |
| 18-168, gnl|rn3|chr5 (61882909-61883034) | |
| 18-168, gnl|tetNig1|chrUn_random (47531124-47531221) | |
| 18-168, gnl|tetNig1|chrUn_random (47531111-47531238) | |
| 18-168, gnl|xenTro1|scaffold_595 (286566-286469) | |
| 18-168, gnl|xenTro1|scaffold_595 (286568-286452) | |
| 321-756, gnl|bosTau2|chr8 (28971368-28970925) | |
| 321-756, gnl|Hg17|chr9 (37770877-37770463) | |
| 321-756, gnl|Mm7|chr4 (45330842-45330438) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fty (0.17584) | |
| lun (0.150489) |