Ss1.1-Mixn-0006l11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCTTGGCGGGACGAGGACGACTACACTTGGTTATACGTTGGCTCTTCAAAGACATTCC TGTCATCAGAGAAATCCCTGAGCCCTTTGCAGTGGTGTAGACATGTCCTAGATAATCCGA CTCCGGAGATGGAAGCGGCAAGGCGTTCCCTGTGCTTTAGACTGGAGCAAGGTTACACAT CCAGGGGCTCCCCTCTTAGTCCCCAGTCATCCATAGACAGTGAGCTGAGTACTTCTGAAT TGGAGGACGATTCTATCTCCATGGGCTATAAGTTACAGGACCTCACTGATGTTCAGATCA TGGCTCGTCTGCAAGAAGAAAGTCTCCGGCAAGACTATGCTTCTACTTCAGCATCTGTGT CGAGACATAGTTCCAGTGTGTCACTGAGTTCAGGAAAAAAAGGGACGTGTAGTGATCAAG AATATGATCGGTTCAGCCTGGAGGACGAGGAGGAATTTGATCACTTGCCACCACCGCAGC CTCGTCTGCCAAGATGTTCACCTTTCCAAAGAGGAATTCCCCATTCACAGACTTTCTCCA GCATTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTTCAAATAATTACCAGC AGCAACAGTGTTACTCACCTCAAGCCCAGACTCCAGATCAACAACCAAATAGGACCAACG GAGATAAGCTCCGAAGAAGTATGCCTAATCTAGCCCGGATGCCAAGTACCACTGCCGTTA GTAGCAACGTTAGTTCCCCAGTTACCGTGCGAAATAGTCAGAGTTTTGACTCCAGCTTGC ATGGAGCTGCAAATGGAATTTCAAGAATACAGTCTTGTATTCCGTCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCTTGGCGGGACGAGGACGACTACACTTGGTTATACGTTGGCTCTTCAAAGACATTCC TGTCATCAGAGAAATCCCTGAGCCCTTTGCAGTGGTGTAGACATGTCCTAGATAATCCGA CTCCGGAGATGGAAGCGGCAAGGCGTTCCCTGTGCTTTAGACTGGAGCAAGGTTACACAT CCAGGGGCTCCCCTCTTAGTCCCCAGTCATCCATAGACAGTGAGCTGAGTACTTCTGAAT TGGAGGACGATTCTATCTCCATGGGCTATAAGTTACAGGACCTCACTGATGTTCAGATCA TGGCTCGTCTGCAAGAAGAAAGTCTCCGGCAAGACTATGCTTCTACTTCAGCATCTGTGT CGAGACATAGTTCCAGTGTGTCACTGAGTTCAGGAAAAAAAGGGACGTGTAGTGATCAAG AATATGATCGGTTCAGCCTGGAGGACGAGGAGGAATTTGATCACTTGCCACCACCGCAGC CTCGTCTGCCAAGATGTTCACCTTTCCAAAGAGGAATTCCCCATTCACAGACTTTCTCCA GCATTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTTCAAATAATTACCAGC AGCAACAGTGTTACTCACCTCAAGCCCAGACTCCAGATCAACAACCAAATAGGACCAACG GAGATAAGCTCCGAAGAAGTATGCCTAATCTAGCCCGGATGCCAAGTACCACTGCCGTTA GTAGCAACGTTAGTTCCCCAGTTACCGTGCGAAATAGTCAGAGTTTTGACTCCAGCTTGC ATGGAGCTGCAAATGGAATTTCAAGAATACAGTCTTGTATTCCGTCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 361-455, - strand, RNAz p=0.817224 | |
| 401-520, - strand, RNAz p=0.856567 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 361-455, - strand, RNAz p=0.817224 | |
| 401-520, - strand, RNAz p=0.856567 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 31-176, gnl|bosTau2|chr5 (7635081-7634936) | |
| 31-176, gnl|Hg17|chr13 (77191667-77191812) | |
| 31-176, gnl|Mm7|chr14 (98089323-98089467) | |
| 322-663, gnl|bosTau2|chr5 (7608797-7608456) | |
| 322-663, gnl|canFam2|chr22 (34191359-34191585) | |
| 322-663, gnl|danRer3|chrUn (179753071-179753287) | |
| 322-663, gnl|dasNov1|scaffold_7415 (2815-3049) | |
| 322-663, gnl|echTel1|scaffold_168590 (2639-2869) | |
| 322-663, gnl|fr1|chrUn (264435479-264435704) | |
| 322-663, gnl|galGal2|chr1 (150745061-150744830) | |
| 322-663, gnl|hg17|chr13 (77218635-77218863) | |
| 322-663, gnl|Hg17|chr13 (77218650-77218988) | |
| 322-663, gnl|loxAfr1|scaffold_240 (108873-109100) | |
| 322-663, gnl|mm7|chr14 (98120440-98120666) | |
| 322-663, gnl|Mm7|chr14 (98120453-98120791) | |
| 322-663, gnl|monDom2|scaffold_8 (15596900-15597128) | |
| 322-663, gnl|panTro1|chr14 (59852919-59853147) | |
| 322-663, gnl|rheMac2|chr17 (58233001-58233229) | |
| 322-663, gnl|rn3|chr15 (87767254-87767480) | |
| 322-663, gnl|tetNig1|chr2 (8239162-8239372) | |
| 322-663, gnl|xenTro1|scaffold_141 (1636981-1636742) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-176, gnl|bosTau2|chr5 (7635081-7634936) | |
| 31-176, gnl|Hg17|chr13 (77191667-77191812) | |
| 31-176, gnl|Mm7|chr14 (98089323-98089467) | |
| 322-663, gnl|bosTau2|chr5 (7608797-7608456) | |
| 322-663, gnl|canFam2|chr22 (34191359-34191585) | |
| 322-663, gnl|danRer3|chrUn (179753071-179753287) | |
| 322-663, gnl|dasNov1|scaffold_7415 (2815-3049) | |
| 322-663, gnl|echTel1|scaffold_168590 (2639-2869) | |
| 322-663, gnl|fr1|chrUn (264435479-264435704) | |
| 322-663, gnl|galGal2|chr1 (150745061-150744830) | |
| 322-663, gnl|hg17|chr13 (77218635-77218863) | |
| 322-663, gnl|Hg17|chr13 (77218650-77218988) | |
| 322-663, gnl|loxAfr1|scaffold_240 (108873-109100) | |
| 322-663, gnl|mm7|chr14 (98120440-98120666) | |
| 322-663, gnl|Mm7|chr14 (98120453-98120791) | |
| 322-663, gnl|monDom2|scaffold_8 (15596900-15597128) | |
| 322-663, gnl|panTro1|chr14 (59852919-59853147) | |
| 322-663, gnl|rheMac2|chr17 (58233001-58233229) | |
| 322-663, gnl|rn3|chr15 (87767254-87767480) | |
| 322-663, gnl|tetNig1|chr2 (8239162-8239372) | |
| 322-663, gnl|xenTro1|scaffold_141 (1636981-1636742) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |