Ss1.1-Mixn-0006n08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTAAGGTTCCGTAAATACTTTATTTTCCCATAGTTTTAGGTCA GAAAGAAGCATCTGGTAATAAAAATAACAGAATTATGTCCCCGGGTCCGCTCTGGCGCGT GCCGGCCCAGGCCCCCAGGAAGGCTCGGGCAGCACTGAGGTTAGTCTGCTATTTACACGT ATGTTACAGACGGAGGGGTGCGAGGGGCCTCAGCTGGCAAGATTCAGTGTCTCGGGCGGG TGGGCGCTGGTGCCCCCGCCCTCCTTCCTGGTCTGGGAAGAAAGCGTGAGGAGGGCTTGG TGGCGGGAGCCTAGGCAGCCGGCTCAACGGGGGGGCAGGAGTGGGCCGTGATGTCGCTGT GCTTGTAGGTGGCCTCGTCCAGGTCCAGCGCCTTGCCGTTGACCTCCAGCGTCATGCAGC CACGGTAAAAGGCAGTGACCGGGGCCGAGGTCACCGGCACATCTGGCAGCCCCCCAATGA AGGTGAGCACAGAGCCCTGCAGGTGCCTCCCCAGGAGCACCAGCCTCTCCTGCAGCCCTG CCGGGCTCACGTCACGCTGGCCCCTGGTGCCATCCACCTCCAGGGTGGCCTCGTCCTTGT TCACAGAGACGGTCACCACGTGCTCCTGGCCGTCACAGACCTTGATCTCCATCAGGGCCA GGGTGACGCTCTCCGCGGCCAGGACGACCAGCTGCTTTTTGAGCTTCTTGGTGGAGTGGT AGTCGACCAGGGCCACGGAGAGCACGACGGCCTGGTCCCCGCCAACCAGTGCGAGCAGCA CCCCCGTGTCAGTGGCGGGGCGGATCCGAGCCACAGCCTCTACTTCCCAAAAGGTCTCCG CCCCGATGTCCGGCGACGTCCGAGCGTAGTCCAGGCTGTACAGGGCGAACCCAGTCCCGG GGAAGAAGGAGCCCCTCTCGGTCAGGGAGAAGCACTGCATCTTCGCGTTCACGCGGACCG TTTCTTGGATGGTGGTGTCCTCGCCATTCAGCCAGTTCCAGCTCCTCATGCAGCCGTCGA GACGGGGGTTCATGGGCTGGACGAGGTCCTTCTCCTTGAAGGGGATCCCCCCCACAGTCA GGTTCAGATGGTACAGCCCCCTGTCCAGCTGGAACAGCTCCCCGGCCACGGCGATCTTCA TCACAGCGTCCCTGTTCACCTTGACCACCAGGTTCCGCTCAAGCTCCTCAACAGAGATTG TCTGCCACACGCCGTGGTTGATGACGGGGCCGCTGCTAGTGACGCGGCCGACGCCCTGGT AGCGGAGCTGCAATTCCAGCCGGCCTGCCCGAAGGCCTAGGACGATCCAGGTGCTGTCCT GACGGCCGCCAGCGAAGAACAGGACACCCTCGGGGTCAAAGGTCCTGAAGTCGAACTCGG CCACCAGTCTTGTGGGCTGCAGCCGTTTGAAGCGCAGCCTGATCACAGGCGTCCCACTGA ACATGCGGCCCAGGTACAGGGACTTCACACTCTTGGCCACGTTGAAAGGCACACAGGGCA GGATGTCCTCACAGGTGCTCATGTCCTGGGACAGCTTGAGGCCCCCGCGCCCATCGCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTAAGGTTCCGTAAATACTTTATTTTCCCATAGTTTTAGGTCA GAAAGAAGCATCTGGTAATAAAAATAACAGAATTATGTCCCCGGGTCCGCTCTGGCGCGT GCCGGCCCAGGCCCCCAGGAAGGCTCGGGCAGCACTGAGGTTAGTCTGCTATTTACACGT ATGTTACAGACGGAGGGGTGCGAGGGGCCTCAGCTGGCAAGATTCAGTGTCTCGGGCGGG TGGGCGCTGGTGCCCCCGCCCTCCTTCCTGGTCTGGGAAGAAAGCGTGAGGAGGGCTTGG TGGCGGGAGCCTAGGCAGCCGGCTCAACGGGGGGGCAGGAGTGGGCCGTGATGTCGCTGT GCTTGTAGGTGGCCTCGTCCAGGTCCAGCGCCTTGCCGTTGACCTCCAGCGTCATGCAGC CACGGTAAAAGGCAGTGACCGGGGCCGAGGTCACCGGCACATCTGGCAGCCCCCCAATGA AGGTGAGCACAGAGCCCTGCAGGTGCCTCCCCAGGAGCACCAGCCTCTCCTGCAGCCCTG CCGGGCTCACGTCACGCTGGCCCCTGGTGCCATCCACCTCCAGGGTGGCCTCGTCCTTGT TCACAGAGACGGTCACCACGTGCTCCTGGCCGTCACAGACCTTGATCTCCATCAGGGCCA GGGTGACGCTCTCCGCGGCCAGGACGACCAGCTGCTTTTTGAGCTTCTTGGTGGAGTGGT AGTCGACCAGGGCCACGGAGAGCACGACGGCCTGGTCCCCGCCAACCAGTGCGAGCAGCA CCCCCGTGTCAGTGGCGGGGCGGATCCGAGCCACAGCCTCTACTTCCCAAAAGGTCTCCG CCCCGATGTCCGGCGACGTCCGAGCGTAGTCCAGGCTGTACAGGGCGAACCCAGTCCCGG GGAAGAAGGAGCCCCTCTCGGTCAGGGAGAAGCACTGCATCTTCGCGTTCACGCGGACCG TTTCTTGGATGGTGGTGTCCTCGCCATTCAGCCAGTTCCAGCTCCTCATGCAGCCGTCGA GACGGGGGTTCATGGGCTGGACGAGGTCCTTCTCCTTGAAGGGGATCCCCCCCACAGTCA GGTTCAGATGGTACAGCCCCCTGTCCAGCTGGAACAGCTCCCCGGCCACGGCGATCTTCA TCACAGCGTCCCTGTTCACCTTGACCACCAGGTTCCGCTCAAGCTCCTCAACAGAGATTG TCTGCCACACGCCGTGGTTGATGACGGGGCCGCTGCTAGTGACGCGGCCGACGCCCTGGT AGCGGAGCTGCAATTCCAGCCGGCCTGCCCGAAGGCCTAGGACGATCCAGGTGCTGTCCT GACGGCCGCCAGCGAAGAACAGGACACCCTCGGGGTCAAAGGTCCTGAAGTCGAACTCGG CCACCAGTCTTGTGGGCTGCAGCCGTTTGAAGCGCAGCCTGATCACAGGCGTCCCACTGA ACATGCGGCCCAGGTACAGGGACTTCACACTCTTGGCCACGTTGAAAGGCACACAGGGCA GGATGTCCTCACAGGTGCTCATGTCCTGGGACAGCTTGAGGCCCCCGCGCCCATCGCAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 463-645, - strand, RNAz p=0.92998 | |
| 577-694, - strand, RNAz p=0.892525 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 463-645, - strand, RNAz p=0.92998 | |
| 577-694, - strand, RNAz p=0.892525 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 463-694, gnl|bosTau2|chr12 (48091456-48091225) | |
| 463-694, gnl|canFam2|chr22 (63935831-63935581) | |
| 463-694, gnl|danRer3|chrUn (104790125-104790354) | |
| 463-694, gnl|echTel1|scaffold_234160 (3083-3328) | |
| 463-694, gnl|galGal2|chr1 (130209660-130209908) | |
| 463-694, gnl|hg17|chr13 (113588775-113589025) | |
| 463-694, gnl|Hg17|chr13 (113589012-113588781) | |
| 463-694, gnl|loxAfr1|scaffold_8268 (13162-12914) | |
| 463-694, gnl|mm7|chr8 (13441086-13440836) | |
| 463-694, gnl|Mm7|chr8 (13440847-13441078) | |
| 463-694, gnl|monDom2|scaffold_11 (31215172-31215421) | |
| 463-694, gnl|panTro1|chr14_random (3365399-3365149) | |
| 463-694, gnl|rheMac2|chr17 (93955435-93955185) | |
| 463-694, gnl|rn3|chr16 (80929739-80929983) | |
| 463-694, gnl|xenTro1|scaffold_343 (329757-329517) | |
| 865-1033, gnl|bosTau2|chr12 (48086696-48086528) | |
| 865-1033, gnl|canFam2|chr22 (63939438-63939251) | |
| 865-1033, gnl|danRer3|chrUn (104787590-104787775) | |
| 865-1033, gnl|echTel1|scaffold_276924 (15507-15694) | |
| 865-1033, gnl|fr1|chrUn (162983974-162984157) | |
| 865-1033, gnl|galGal2|chr1 (130207606-130207798) | |
| 865-1033, gnl|hg17|chr13 (113583799-113583986) | |
| 865-1033, gnl|Hg17|chr13 (113583974-113583806) | |
| 865-1033, gnl|loxAfr1|scaffold_8268 (21094-20907) | |
| 865-1033, gnl|mm7|chr8 (13444616-13444428) | |
| 865-1033, gnl|Mm7|chr8 (13444439-13444607) | |
| 865-1033, gnl|monDom2|scaffold_11 (31203932-31204114) | |
| 865-1033, gnl|panTro1|chr14_random (3371110-3370923) | |
| 865-1033, gnl|rheMac2|chr17 (93962350-93962163) | |
| 865-1033, gnl|rn3|chr16 (80926490-80926678) | |
| 865-1033, gnl|tetNig1|chr5 (8262832-8263011) | |
| 865-1033, gnl|xenTro1|scaffold_343 (330610-330429) | |
| 1035-1198, gnl|bosTau2|chr12 (48085513-48085350) | |
| 1035-1198, gnl|canFam2|chr22 (63940613-63940440) | |
| 1035-1198, gnl|danRer3|chrUn (104786940-104787102) | |
| 1035-1198, gnl|echTel1|scaffold_276924 (14111-14285) | |
| 1035-1198, gnl|fr1|chrUn (162983717-162983895) | |
| 1035-1198, gnl|galGal2|chr1 (130206293-130206465) | |
| 1035-1198, gnl|hg17|chr13 (113582243-113582417) | |
| 1035-1198, gnl|Hg17|chr13 (113582422-113582259) | |
| 1035-1198, gnl|loxAfr1|scaffold_8268 (22564-22390) | |
| 1035-1198, gnl|mm7|chr8 (13445848-13445677) | |
| 1035-1198, gnl|Mm7|chr8 (13445670-13445833) | |
| 1035-1198, gnl|monDom2|scaffold_11 (31200193-31200364) | |
| 1035-1198, gnl|oryCun1|scaffold_113714 (4014-4185) | |
| 1035-1198, gnl|rheMac2|chr17 (93963954-93963780) | |
| 1035-1198, gnl|rn3|chr16 (80925360-80925531) | |
| 1035-1198, gnl|tetNig1|chr5 (8262587-8262751) | |
| 1035-1198, gnl|xenTro1|scaffold_343 (331984-331811) | |
| 1200-1397, gnl|bosTau2|chr12 (48083625-48083429) | |
| 1200-1397, gnl|canFam2|chr22 (63943132-63942819) | |
| 1200-1397, gnl|danRer3|chrUn (104785298-104785521) | |
| 1200-1397, gnl|dasNov1|scaffold_25265 (9899-10170) | |
| 1200-1397, gnl|echTel1|scaffold_237959 (3361-3626) | |
| 1200-1397, gnl|fr1|chrUn (162983432-162983661) | |
| 1200-1397, gnl|galGal2|chr1 (130202495-130202723) | |
| 1200-1397, gnl|hg17|chr13 (113578447-113578691) | |
| 1200-1397, gnl|Hg17|chr13 (113578670-113578474) | |
| 1200-1397, gnl|loxAfr1|scaffold_77599 (379-125) | |
| 1200-1397, gnl|mm7|chr8 (13449119-13448856) | |
| 1200-1397, gnl|Mm7|chr8 (13448878-13449069) | |
| 1200-1397, gnl|monDom2|scaffold_11 (31190710-31190985) | |
| 1200-1397, gnl|rheMac2|chr17 (93966393-93966149) | |
| 1200-1397, gnl|rn3|chr16 (80922416-80922679) | |
| 1200-1397, gnl|tetNig1|chr5 (8262305-8262523) | |
| 1200-1397, gnl|xenTro1|scaffold_343 (338356-338123) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 463-694, gnl|bosTau2|chr12 (48091456-48091225) | |
| 463-694, gnl|canFam2|chr22 (63935831-63935581) | |
| 463-694, gnl|danRer3|chrUn (104790125-104790354) | |
| 463-694, gnl|echTel1|scaffold_234160 (3083-3328) | |
| 463-694, gnl|galGal2|chr1 (130209660-130209908) | |
| 463-694, gnl|hg17|chr13 (113588775-113589025) | |
| 463-694, gnl|Hg17|chr13 (113589012-113588781) | |
| 463-694, gnl|loxAfr1|scaffold_8268 (13162-12914) | |
| 463-694, gnl|mm7|chr8 (13441086-13440836) | |
| 463-694, gnl|Mm7|chr8 (13440847-13441078) | |
| 463-694, gnl|monDom2|scaffold_11 (31215172-31215421) | |
| 463-694, gnl|panTro1|chr14_random (3365399-3365149) | |
| 463-694, gnl|rheMac2|chr17 (93955435-93955185) | |
| 463-694, gnl|rn3|chr16 (80929739-80929983) | |
| 463-694, gnl|xenTro1|scaffold_343 (329757-329517) | |
| 865-1033, gnl|bosTau2|chr12 (48086696-48086528) | |
| 865-1033, gnl|canFam2|chr22 (63939438-63939251) | |
| 865-1033, gnl|danRer3|chrUn (104787590-104787775) | |
| 865-1033, gnl|echTel1|scaffold_276924 (15507-15694) | |
| 865-1033, gnl|fr1|chrUn (162983974-162984157) | |
| 865-1033, gnl|galGal2|chr1 (130207606-130207798) | |
| 865-1033, gnl|hg17|chr13 (113583799-113583986) | |
| 865-1033, gnl|Hg17|chr13 (113583974-113583806) | |
| 865-1033, gnl|loxAfr1|scaffold_8268 (21094-20907) | |
| 865-1033, gnl|mm7|chr8 (13444616-13444428) | |
| 865-1033, gnl|Mm7|chr8 (13444439-13444607) | |
| 865-1033, gnl|monDom2|scaffold_11 (31203932-31204114) | |
| 865-1033, gnl|panTro1|chr14_random (3371110-3370923) | |
| 865-1033, gnl|rheMac2|chr17 (93962350-93962163) | |
| 865-1033, gnl|rn3|chr16 (80926490-80926678) | |
| 865-1033, gnl|tetNig1|chr5 (8262832-8263011) | |
| 865-1033, gnl|xenTro1|scaffold_343 (330610-330429) | |
| 1035-1198, gnl|bosTau2|chr12 (48085513-48085350) | |
| 1035-1198, gnl|canFam2|chr22 (63940613-63940440) | |
| 1035-1198, gnl|danRer3|chrUn (104786940-104787102) | |
| 1035-1198, gnl|echTel1|scaffold_276924 (14111-14285) | |
| 1035-1198, gnl|fr1|chrUn (162983717-162983895) | |
| 1035-1198, gnl|galGal2|chr1 (130206293-130206465) | |
| 1035-1198, gnl|hg17|chr13 (113582243-113582417) | |
| 1035-1198, gnl|Hg17|chr13 (113582422-113582259) | |
| 1035-1198, gnl|loxAfr1|scaffold_8268 (22564-22390) | |
| 1035-1198, gnl|mm7|chr8 (13445848-13445677) | |
| 1035-1198, gnl|Mm7|chr8 (13445670-13445833) | |
| 1035-1198, gnl|monDom2|scaffold_11 (31200193-31200364) | |
| 1035-1198, gnl|oryCun1|scaffold_113714 (4014-4185) | |
| 1035-1198, gnl|rheMac2|chr17 (93963954-93963780) | |
| 1035-1198, gnl|rn3|chr16 (80925360-80925531) | |
| 1035-1198, gnl|tetNig1|chr5 (8262587-8262751) | |
| 1035-1198, gnl|xenTro1|scaffold_343 (331984-331811) | |
| 1200-1397, gnl|bosTau2|chr12 (48083625-48083429) | |
| 1200-1397, gnl|canFam2|chr22 (63943132-63942819) | |
| 1200-1397, gnl|danRer3|chrUn (104785298-104785521) | |
| 1200-1397, gnl|dasNov1|scaffold_25265 (9899-10170) | |
| 1200-1397, gnl|echTel1|scaffold_237959 (3361-3626) | |
| 1200-1397, gnl|fr1|chrUn (162983432-162983661) | |
| 1200-1397, gnl|galGal2|chr1 (130202495-130202723) | |
| 1200-1397, gnl|hg17|chr13 (113578447-113578691) | |
| 1200-1397, gnl|Hg17|chr13 (113578670-113578474) | |
| 1200-1397, gnl|loxAfr1|scaffold_77599 (379-125) | |
| 1200-1397, gnl|mm7|chr8 (13449119-13448856) | |
| 1200-1397, gnl|Mm7|chr8 (13448878-13449069) | |
| 1200-1397, gnl|monDom2|scaffold_11 (31190710-31190985) | |
| 1200-1397, gnl|rheMac2|chr17 (93966393-93966149) | |
| 1200-1397, gnl|rn3|chr16 (80922416-80922679) | |
| 1200-1397, gnl|tetNig1|chr5 (8262305-8262523) | |
| 1200-1397, gnl|xenTro1|scaffold_343 (338356-338123) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cov (1.05722) | |
| amn (0.835422) | |
| hlv (0.557025) | |
| nep (0.36785) | |
| fbs (0.350693) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (1.05722) | |
| amn (0.835422) | |
| hlv (0.557025) | |
| nep (0.36785) | |
| fbs (0.350693) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |