Non-Coding RNA Search

Ss1.1-Mixn-0006p10.5

Sequence:


               
               TAACATCCGCAGCCCCTGTCCGCCGCCCTCCGTGGTCCCGCAGAGAGGCAGAGAGGGCGC
TGCGCCGAGGTGGGAGCGCCGGGAGCAGCAGCGCCATAGAATGCCCAGGGCCTCGCTGTC
CTGAGCGGTCCTGATCCAGACGCCTGCCCGTCCCGCACACGCCTCGCCGCCGCCGCCAGC
GTGCCCGCCATGGAGTCCAGAGGGAGGTCGGCCAACAGCCCCAAGGCCGACGCCAAGGCT
ACCACTGAGGCCAGGGCGCCCCCGGCTGTGGATGGGAAAGTGCCCTCAGCCAAGAAGCAG
GAGGCCCAAAAGGCAGAGAAGCAGGAGCCCCCGGCGGCCCCCACCCTGCCACCTGCCAAG
AAGACCTCGGCCCTTCTCGACAACCACAGCAACCTGAAGCCGGCGCCCGCAGCCCCCAGT
AGCCCAGATGCAGCCCCCGAGCCCAAGGGCCCTGGGGATGGGGCTGAGGAGGCCGAGGCC
CCCAGCGGGGGCCCAGGGGGCCGAGGTCCCTGCCCTTTTGAGAACTTGAACCCCTTGCTT
GTGGCCGGGGGCATAGCCATGGCGGCTGCAGCCCTGATTCTCGGTGTGGTTTTCCTGGCC
CGAAAAAAATGATGGCTGGCGCCCAGGTAGGGCGCAGCAGCTGCTTCGTGTACAGACCTC
GGGAACCTTGTGCATGCCAAGTTCACACCCAGCTAGCTACACACGCGTAGTATCTATACT
CGTACACACCCACACACACAGAGGGAAAGCGAGGGACAGGCCCCCAGAGCCCTGGAGATC
AAGCCCCTGGGTCGGTCCCGGTACCTCCCCCTCCGAACCTCGGGGCAGAAGGAACCCCGG
CTCGGAGGTTACTGAGCAGCACGGGCAGAGGCTCAGTCTGGACCAGGAAGGAGTGGACAC
AAGTGCCAGGCTGTTCCAAGAGGCTCGAGCGTGGGCCTGTGGGCTCCCTCGCAGCAGCGT
TCTGACGAGCCCCCAGGGTGGGAGCCCTCAGGGCTGGGCAAGGGTCTGGGACGGGTTCTG
ACCTGTTCCCAGCCCGCACGGGGACATTAAAGGGATGGCTGTCTCACTAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACATCCGCAGCCCCTGTCCGCCGCCCTCCGTGGTCCCGCAGAGAGGCAGAGAGGGCGC
TGCGCCGAGGTGGGAGCGCCGGGAGCAGCAGCGCCATAGAATGCCCAGGGCCTCGCTGTC
CTGAGCGGTCCTGATCCAGACGCCTGCCCGTCCCGCACACGCCTCGCCGCCGCCGCCAGC
GTGCCCGCCATGGAGTCCAGAGGGAGGTCGGCCAACAGCCCCAAGGCCGACGCCAAGGCT
ACCACTGAGGCCAGGGCGCCCCCGGCTGTGGATGGGAAAGTGCCCTCAGCCAAGAAGCAG
GAGGCCCAAAAGGCAGAGAAGCAGGAGCCCCCGGCGGCCCCCACCCTGCCACCTGCCAAG
AAGACCTCGGCCCTTCTCGACAACCACAGCAACCTGAAGCCGGCGCCCGCAGCCCCCAGT
AGCCCAGATGCAGCCCCCGAGCCCAAGGGCCCTGGGGATGGGGCTGAGGAGGCCGAGGCC
CCCAGCGGGGGCCCAGGGGGCCGAGGTCCCTGCCCTTTTGAGAACTTGAACCCCTTGCTT
GTGGCCGGGGGCATAGCCATGGCGGCTGCAGCCCTGATTCTCGGTGTGGTTTTCCTGGCC
CGAAAAAAATGATGGCTGGCGCCCAGGTAGGGCGCAGCAGCTGCTTCGTGTACAGACCTC
GGGAACCTTGTGCATGCCAAGTTCACACCCAGCTAGCTACACACGCGTAGTATCTATACT
CGTACACACCCACACACACAGAGGGAAAGCGAGGGACAGGCCCCCAGAGCCCTGGAGATC
AAGCCCCTGGGTCGGTCCCGGTACCTCCCCCTCCGAACCTCGGGGCAGAAGGAACCCCGG
CTCGGAGGTTACTGAGCAGCACGGGCAGAGGCTCAGTCTGGACCAGGAAGGAGTGGACAC
AAGTGCCAGGCTGTTCCAAGAGGCTCGAGCGTGGGCCTGTGGGCTCCCTCGCAGCAGCGT
TCTGACGAGCCCCCAGGGTGGGAGCCCTCAGGGCTGGGCAAGGGTCTGGGACGGGTTCTG
ACCTGTTCCCAGCCCGCACGGGGACATTAAAGGGATGGCTGTCTCACTAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               BM88_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               BM88_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               88-800, gnl|bosTau2|chr29 (44792828-44792099)
               

               
               88-800, gnl|Hg17|chr11 (778660-777934)
               

               
               88-800, gnl|Mm7|chr7 (137845270-137844622)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-800, gnl|bosTau2|chr29 (44792828-44792099)
               

               
               88-800, gnl|Hg17|chr11 (778660-777934)
               

               
               88-800, gnl|Mm7|chr7 (137845270-137844622)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               hyp (0.85702)
               

               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               fbs (0.350693)
               

               
               cbr (0.255951)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.85702)
               

               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               fbs (0.350693)
               

               
               cbr (0.255951)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               ecc (0.115035)

	88-800, gnl\|bosTau2\|chr29 (44792828-44792099)
	88-800, gnl\|Hg17\|chr11 (778660-777934)
	88-800, gnl\|Mm7\|chr7 (137845270-137844622)

	hyp (0.85702)
	fce (0.543183)
	fhi (0.508733)
	fbs (0.350693)
	cbr (0.255951)
	ebs (0.236602)
	fcc (0.197785)
	ecc (0.115035)