Ss1.1-Mixn-0006p12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGAGGAGGAAGAAGAGGTGGAGGAGGCGCCCGGCCCAGCAGCCAAGGTAGTAGAGAG GGAGGACCCGGTGCCAGCAACCCGCCCAGTCACCCACGCAGGTGCCAATGTCAGCACAGT AGAAACAGTGATCCAGGAAAACGTAGTTGCCCCCCAGATCCCCACCGAGAAGAGTGTAAA CGAAGGCGTTAAGCAAGACGTGCGCGAAGACCCAGAGGACGAGCCGCAGAAAGTTAACGG AGAGGTGTCTCATGTTGACATTGATGTTTTGCCACAAGTTATTTGTTGTTCAGAGCCACC AGTGGTAAAAACAGAGATGGTAACAATTTCTGATGCCTCACAAAGGACAGAAATCTCCAC CAAGGAAGTCCCTATTGTCCAAACTGAGACCAAAACCATCACATATGAATCTCCACAGAT TGACGGCGGGGCTGGTGGTGACTCGGGCACGTTACTGACTGCACAAACCATCACATCTGA GTCCGTGTCAACAACGACAACCACACACATCACCAAGACTGTAAAAGGTGGGATATCTGA AACAAGAATTGAGAAGCGCATCGTGATCACAGGAGATGCAGATATTGACCATGACCAGGC ACTGGCCCAGGCCATCAGGGAAGCCAGGGAGCAGCACCCTGACATGTCAGTCACGCGGGT GGTGGTGCACAAAGAAACCGAGTTGGAGGAGGGGGATGAGTAAGATATCCTCTTTTTAGA CCACAACATTCAACTTTGTGAACCGGAAGAATTTTGACCATTCCAAGTCTTAATGCCACC ACTGCTCCAGCAAATTTATACGACTGTTAACAATGGCCAGAAGCCTGAAGAATTAAAATG CCAACACCAAACCTTACCTTAACAGCTCTGGTCTATACCATTCCCACGCATTTTAATATG TTGTTTTGTTTTATAACCACTCCTAAATATTCTTGATTCTTTCTTTCTTTTTTTTTTCTG ATAGTTTTGTTTTTGTTTTCTCTTTACTTTGTGTACAACTACCTGCTTTTTACAACTCAT TTTGATCAAATGATAGTGAACAAAGCCAGCCCAAGCTGGTAAGGTGCTGTTCGCTTGAAC AGGTGCTGTTGTGCGGAAAGGAAACTCTGTGACTAATTTAGATAGTAGCTTTCCTTCTTT CCAAATTCTTCCCACGGAGTTCTTACAAGTAAATATTTACAGAGTTTTCAGATTGCCGTA AATATACTGTATGAGAAAATATTAATGCAGATTTAAAAGCATTTCTTACATCAAGAAAAT TTTCTAGTGTTGGAGAATTTCGTTGGGGATATTTTTGATACTGAACCCTTTTGACTTTCC AGTCCTGTGACTTTTTACTTTTAGCGGAAAGTCCGGGAGTCTCCAGACTGGAGAATTACG CAGAAGTTCACTGACCACGCACTGTGCTAGAGACCCTGTCGCACCACAGTGCCGATGCTT CTCAGACACAGGCTCTTCAGCAGCACTCCAGCCACCGGAGGGGGAGAAAAACATCTCTTC CCTCTCGCTAAATCATTCAGGCAGCTTAAAACCTTAGTGCTTTCTTTCTTAACATGTCCA AACTTCAATACTTTCCATTATTTGAACCCTCGTGTAGAGCACTTGCTTTGTGTTAAACCT CCTGTCTCCATGTGAAACTGACCTTTTTTGTTATTGAGCAGGTGTATCACTTTCAGGTAG TGTGATGATTCATGCAGGGGTGAGGAGGCCAGGAGAGGAGGAAGGCTATGGCGGTGTTTG TGACGGTTGTAAGAAAACTGTGCCGTTTAAAGCTGACACCAGATAACCTGCTAGGGACTT ATTAACTGTATTGAACATTCTTTCCCTTGCTTTGCCCCTGTGTATAATTAGAATGCCAAG ATTAGCTACCTAGCAGCTTCAAGTTGTATTAAATGATATTTTGCTTTCTGTAATACTGTT ATAAAATAAAGTTTGTTTATTCTCTAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGAGGAGGAAGAAGAGGTGGAGGAGGCGCCCGGCCCAGCAGCCAAGGTAGTAGAGAG GGAGGACCCGGTGCCAGCAACCCGCCCAGTCACCCACGCAGGTGCCAATGTCAGCACAGT AGAAACAGTGATCCAGGAAAACGTAGTTGCCCCCCAGATCCCCACCGAGAAGAGTGTAAA CGAAGGCGTTAAGCAAGACGTGCGCGAAGACCCAGAGGACGAGCCGCAGAAAGTTAACGG AGAGGTGTCTCATGTTGACATTGATGTTTTGCCACAAGTTATTTGTTGTTCAGAGCCACC AGTGGTAAAAACAGAGATGGTAACAATTTCTGATGCCTCACAAAGGACAGAAATCTCCAC CAAGGAAGTCCCTATTGTCCAAACTGAGACCAAAACCATCACATATGAATCTCCACAGAT TGACGGCGGGGCTGGTGGTGACTCGGGCACGTTACTGACTGCACAAACCATCACATCTGA GTCCGTGTCAACAACGACAACCACACACATCACCAAGACTGTAAAAGGTGGGATATCTGA AACAAGAATTGAGAAGCGCATCGTGATCACAGGAGATGCAGATATTGACCATGACCAGGC ACTGGCCCAGGCCATCAGGGAAGCCAGGGAGCAGCACCCTGACATGTCAGTCACGCGGGT GGTGGTGCACAAAGAAACCGAGTTGGAGGAGGGGGATGAGTAAGATATCCTCTTTTTAGA CCACAACATTCAACTTTGTGAACCGGAAGAATTTTGACCATTCCAAGTCTTAATGCCACC ACTGCTCCAGCAAATTTATACGACTGTTAACAATGGCCAGAAGCCTGAAGAATTAAAATG CCAACACCAAACCTTACCTTAACAGCTCTGGTCTATACCATTCCCACGCATTTTAATATG TTGTTTTGTTTTATAACCACTCCTAAATATTCTTGATTCTTTCTTTCTTTTTTTTTTCTG ATAGTTTTGTTTTTGTTTTCTCTTTACTTTGTGTACAACTACCTGCTTTTTACAACTCAT TTTGATCAAATGATAGTGAACAAAGCCAGCCCAAGCTGGTAAGGTGCTGTTCGCTTGAAC AGGTGCTGTTGTGCGGAAAGGAAACTCTGTGACTAATTTAGATAGTAGCTTTCCTTCTTT CCAAATTCTTCCCACGGAGTTCTTACAAGTAAATATTTACAGAGTTTTCAGATTGCCGTA AATATACTGTATGAGAAAATATTAATGCAGATTTAAAAGCATTTCTTACATCAAGAAAAT TTTCTAGTGTTGGAGAATTTCGTTGGGGATATTTTTGATACTGAACCCTTTTGACTTTCC AGTCCTGTGACTTTTTACTTTTAGCGGAAAGTCCGGGAGTCTCCAGACTGGAGAATTACG CAGAAGTTCACTGACCACGCACTGTGCTAGAGACCCTGTCGCACCACAGTGCCGATGCTT CTCAGACACAGGCTCTTCAGCAGCACTCCAGCCACCGGAGGGGGAGAAAAACATCTCTTC CCTCTCGCTAAATCATTCAGGCAGCTTAAAACCTTAGTGCTTTCTTTCTTAACATGTCCA AACTTCAATACTTTCCATTATTTGAACCCTCGTGTAGAGCACTTGCTTTGTGTTAAACCT CCTGTCTCCATGTGAAACTGACCTTTTTTGTTATTGAGCAGGTGTATCACTTTCAGGTAG TGTGATGATTCATGCAGGGGTGAGGAGGCCAGGAGAGGAGGAAGGCTATGGCGGTGTTTG TGACGGTTGTAAGAAAACTGTGCCGTTTAAAGCTGACACCAGATAACCTGCTAGGGACTT ATTAACTGTATTGAACATTCTTTCCCTTGCTTTGCCCCTGTGTATAATTAGAATGCCAAG ATTAGCTACCTAGCAGCTTCAAGTTGTATTAAATGATATTTTGCTTTCTGTAATACTGTT ATAAAATAAAGTTTGTTTATTCTCTAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 597-707, - strand, RNAz p=0.744613 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 597-707, - strand, RNAz p=0.744613 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 3-295, gnl|bosTau2|chr9 (39323504-39323209) | |
| 3-295, gnl|Hg17|chr6 (131232691-131232396) | |
| 3-295, gnl|Mm7|chr10 (25254278-25254573) | |
| 408-517, gnl|bosTau2|chr9 (39319410-39319301) | |
| 408-517, gnl|canFam2|chr1 (72193406-72193525) | |
| 408-517, gnl|danRer3|chrUn (134972169-134972051) | |
| 408-517, gnl|dasNov1|scaffold_726 (61923-62050) | |
| 408-517, gnl|echTel1|scaffold_311237 (45739-45612) | |
| 408-517, gnl|fr1|chrUn (240173783-240173672) | |
| 408-517, gnl|galGal2|chr3 (55940983-55940875) | |
| 408-517, gnl|hg17|chr6 (131228345-131228472) | |
| 408-517, gnl|Hg17|chr6 (131228478-131228369) | |
| 408-517, gnl|loxAfr1|scaffold_3561 (58720-58843) | |
| 408-517, gnl|mm7|chr10 (25258486-25258358) | |
| 408-517, gnl|Mm7|chr10 (25258350-25258459) | |
| 408-517, gnl|monDom2|scaffold_0 (81238827-81238700) | |
| 408-517, gnl|oryCun1|scaffold_199067 (147596-147724) | |
| 408-517, gnl|panTro1|chr5 (133882981-133883108) | |
| 408-517, gnl|rheMac2|chr4 (133020572-133020445) | |
| 408-517, gnl|rn3|chr1 (20360588-20360716) | |
| 408-517, gnl|tetNig1|chr14 (6558598-6558514) | |
| 408-517, gnl|xenTro1|scaffold_505 (229056-229161) | |
| 586-707, gnl|bosTau2|chr9 (39313052-39312933) | |
| 586-707, gnl|Hg17|chr6 (131221088-131220961) | |
| 586-707, gnl|Mm7|chr10 (25265147-25265270) | |
| 1856-1968, gnl|bosTau2|chr1 (83898986-83899098) | |
| 1856-1968, gnl|canFam2|chr28 (36120220-36120393) | |
| 1856-1968, gnl|dasNov1|scaffold_252439 (369-209) | |
| 1856-1968, gnl|hg17|chr10 (125380585-125380743) | |
| 1856-1968, gnl|mm7|chr2 (53225651-53225822) | |
| 1856-1968, gnl|oryCun1|scaffold_185953 (1382-1535) | |
| 1856-1968, gnl|panTro1|chr8 (127901082-127901242) | |
| 1856-1968, gnl|rheMac2|chr9 (123227188-123227346) | |
| 1856-1968, gnl|rn3|chr3 (34644612-34644784) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-295, gnl|bosTau2|chr9 (39323504-39323209) | |
| 3-295, gnl|Hg17|chr6 (131232691-131232396) | |
| 3-295, gnl|Mm7|chr10 (25254278-25254573) | |
| 408-517, gnl|bosTau2|chr9 (39319410-39319301) | |
| 408-517, gnl|canFam2|chr1 (72193406-72193525) | |
| 408-517, gnl|danRer3|chrUn (134972169-134972051) | |
| 408-517, gnl|dasNov1|scaffold_726 (61923-62050) | |
| 408-517, gnl|echTel1|scaffold_311237 (45739-45612) | |
| 408-517, gnl|fr1|chrUn (240173783-240173672) | |
| 408-517, gnl|galGal2|chr3 (55940983-55940875) | |
| 408-517, gnl|hg17|chr6 (131228345-131228472) | |
| 408-517, gnl|Hg17|chr6 (131228478-131228369) | |
| 408-517, gnl|loxAfr1|scaffold_3561 (58720-58843) | |
| 408-517, gnl|mm7|chr10 (25258486-25258358) | |
| 408-517, gnl|Mm7|chr10 (25258350-25258459) | |
| 408-517, gnl|monDom2|scaffold_0 (81238827-81238700) | |
| 408-517, gnl|oryCun1|scaffold_199067 (147596-147724) | |
| 408-517, gnl|panTro1|chr5 (133882981-133883108) | |
| 408-517, gnl|rheMac2|chr4 (133020572-133020445) | |
| 408-517, gnl|rn3|chr1 (20360588-20360716) | |
| 408-517, gnl|tetNig1|chr14 (6558598-6558514) | |
| 408-517, gnl|xenTro1|scaffold_505 (229056-229161) | |
| 586-707, gnl|bosTau2|chr9 (39313052-39312933) | |
| 586-707, gnl|Hg17|chr6 (131221088-131220961) | |
| 586-707, gnl|Mm7|chr10 (25265147-25265270) | |
| 1856-1968, gnl|bosTau2|chr1 (83898986-83899098) | |
| 1856-1968, gnl|canFam2|chr28 (36120220-36120393) | |
| 1856-1968, gnl|dasNov1|scaffold_252439 (369-209) | |
| 1856-1968, gnl|hg17|chr10 (125380585-125380743) | |
| 1856-1968, gnl|mm7|chr2 (53225651-53225822) | |
| 1856-1968, gnl|oryCun1|scaffold_185953 (1382-1535) | |
| 1856-1968, gnl|panTro1|chr8 (127901082-127901242) | |
| 1856-1968, gnl|rheMac2|chr9 (123227188-123227346) | |
| 1856-1968, gnl|rn3|chr3 (34644612-34644784) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| cmu (1.30475) | |
| csk (0.985222) | |
| clu (0.717875) | |
| cty (0.62448) | |
| tra (0.61546) | |
| cte (0.58548) | |
| eye (0.511509) | |
| cbe (0.478469) | |
| ova (0.387397) | |
| eru (0.360144) | |
| sto (0.359648) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| lun (0.300978) | |
| ski (0.29347) | |
| cst (0.280073) | |
| che (0.272628) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ret (0.257467) | |
| bla (0.248694) | |
| spc (0.226732) | |
| col (0.195008) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eje (0.0988338) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (1.30475) | |
| csk (0.985222) | |
| clu (0.717875) | |
| cty (0.62448) | |
| tra (0.61546) | |
| cte (0.58548) | |
| eye (0.511509) | |
| cbe (0.478469) | |
| ova (0.387397) | |
| eru (0.360144) | |
| sto (0.359648) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| lun (0.300978) | |
| ski (0.29347) | |
| cst (0.280073) | |
| che (0.272628) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ret (0.257467) | |
| bla (0.248694) | |
| spc (0.226732) | |
| col (0.195008) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eje (0.0988338) |