Ss1.1-Mixn-0007e06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGTCTGGGCAATCTTTCCTGCAGGTTTTCCTTGCTGTCTTTTTCAGAAGTTTAAGAA TGGAAGCTGGCCCAGGATTCCCTTCCGGTCCACACTGCCGTGATCTCCTCCCGCCCGCCC CGGTTCACGAGATTTCCCGGCGGTGGGAGAGGGAACGGGCCGAGGGCATTGACCTTCGCC ACGTTGTCCCCCTTGTCTTTTCCAGAGATGCCATCACAAAAATGAAGGACGTCTACCTAA AGAATCCACAGATGGGAGACCCCGCCAGTCTGGACCACAAACTAGCAGAAGTCGGCCAAA ACATAGAAAAACTGAGACTAGAGGCCCAGAAATTTGAGGCCTGGCTGGCCGAGGTGGAGG GCCGGCTCCCGGCACGCAGCGATCAGGCCCGCCGGCAGAGTGGGATGTACGACCTGCAGA ACCCACCTGCGGTCAACAACTGCGCGCAAGACCGGGAGAGCCCGGATGGCAGTTACACGG AGGAGCAGAGCCAGGAGGGTGAGGTGAAGGTGCTGACCACGGATTTCGATGACGAGTTTG ACGACGAGGAGCCCCTTCCTGCCATAGGGACCTGTAAAGCCCTCTACACGTTCGAAGGTC AGAACGAAGGAACCATCTCGGTGGTGGAGGGGGAAACACTGTACGTGATCGAGGAGGACA AAGGCGACGGGTGGACCCGCATCCGCAGAAACGAGGATGAAGAGGGCTACGTCCCCACGT CATACGTCGAAGTCTATTTGGACAAAAATGCCAAAGGTGCTAAGACTTATATTTAATACA ACTTAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGTCTGGGCAATCTTTCCTGCAGGTTTTCCTTGCTGTCTTTTTCAGAAGTTTAAGAA TGGAAGCTGGCCCAGGATTCCCTTCCGGTCCACACTGCCGTGATCTCCTCCCGCCCGCCC CGGTTCACGAGATTTCCCGGCGGTGGGAGAGGGAACGGGCCGAGGGCATTGACCTTCGCC ACGTTGTCCCCCTTGTCTTTTCCAGAGATGCCATCACAAAAATGAAGGACGTCTACCTAA AGAATCCACAGATGGGAGACCCCGCCAGTCTGGACCACAAACTAGCAGAAGTCGGCCAAA ACATAGAAAAACTGAGACTAGAGGCCCAGAAATTTGAGGCCTGGCTGGCCGAGGTGGAGG GCCGGCTCCCGGCACGCAGCGATCAGGCCCGCCGGCAGAGTGGGATGTACGACCTGCAGA ACCCACCTGCGGTCAACAACTGCGCGCAAGACCGGGAGAGCCCGGATGGCAGTTACACGG AGGAGCAGAGCCAGGAGGGTGAGGTGAAGGTGCTGACCACGGATTTCGATGACGAGTTTG ACGACGAGGAGCCCCTTCCTGCCATAGGGACCTGTAAAGCCCTCTACACGTTCGAAGGTC AGAACGAAGGAACCATCTCGGTGGTGGAGGGGGAAACACTGTACGTGATCGAGGAGGACA AAGGCGACGGGTGGACCCGCATCCGCAGAAACGAGGATGAAGAGGGCTACGTCCCCACGT CATACGTCGAAGTCTATTTGGACAAAAATGCCAAAGGTGCTAAGACTTATATTTAATACA ACTTAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 222-339, - strand, RNAz p=0.733074 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 222-339, - strand, RNAz p=0.733074 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 165-339, gnl|bosTau2|chr11 (80499619-80499446) | |
| 165-339, gnl|canFam2|chr9 (57296268-57296071) | |
| 165-339, gnl|danRer3|chr21 (1833949-1834124) | |
| 165-339, gnl|dasNov1|scaffold_1870 (101573-101770) | |
| 165-339, gnl|echTel1|scaffold_263764 (1451-1255) | |
| 165-339, gnl|fr1|chrUn (31018991-31019146) | |
| 165-339, gnl|galGal2|chr17 (5133034-5132862) | |
| 165-339, gnl|hg17|chr9 (129744678-129744881) | |
| 165-339, gnl|Hg17|chr9 (129744874-129744701) | |
| 165-339, gnl|loxAfr1|scaffold_59777 (2728-2924) | |
| 165-339, gnl|mm7|chr2 (31044461-31044612) | |
| 165-339, gnl|Mm7|chr2 (31044628-31044466) | |
| 165-339, gnl|monDom2|scaffold_51 (4942242-4942412) | |
| 165-339, gnl|oryCun1|scaffold_10324 (5129-5314) | |
| 165-339, gnl|panTro1|chr11 (114610591-114610796) | |
| 165-339, gnl|rheMac2|chr15 (8937643-8937438) | |
| 165-339, gnl|rn3|chr3 (9990517-9990665) | |
| 165-339, gnl|tetNig1|chrUn_random (2657819-2657962) | |
| 165-339, gnl|xenTro1|scaffold_82 (78852-79016) | |
| 596-792, gnl|bosTau2|chr11 (80494446-80494250) | |
| 596-792, gnl|Hg17|chr9 (129737831-129737635) | |
| 596-792, gnl|Mm7|chr2 (31040501-31040307) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 165-339, gnl|bosTau2|chr11 (80499619-80499446) | |
| 165-339, gnl|canFam2|chr9 (57296268-57296071) | |
| 165-339, gnl|danRer3|chr21 (1833949-1834124) | |
| 165-339, gnl|dasNov1|scaffold_1870 (101573-101770) | |
| 165-339, gnl|echTel1|scaffold_263764 (1451-1255) | |
| 165-339, gnl|fr1|chrUn (31018991-31019146) | |
| 165-339, gnl|galGal2|chr17 (5133034-5132862) | |
| 165-339, gnl|hg17|chr9 (129744678-129744881) | |
| 165-339, gnl|Hg17|chr9 (129744874-129744701) | |
| 165-339, gnl|loxAfr1|scaffold_59777 (2728-2924) | |
| 165-339, gnl|mm7|chr2 (31044461-31044612) | |
| 165-339, gnl|Mm7|chr2 (31044628-31044466) | |
| 165-339, gnl|monDom2|scaffold_51 (4942242-4942412) | |
| 165-339, gnl|oryCun1|scaffold_10324 (5129-5314) | |
| 165-339, gnl|panTro1|chr11 (114610591-114610796) | |
| 165-339, gnl|rheMac2|chr15 (8937643-8937438) | |
| 165-339, gnl|rn3|chr3 (9990517-9990665) | |
| 165-339, gnl|tetNig1|chrUn_random (2657819-2657962) | |
| 165-339, gnl|xenTro1|scaffold_82 (78852-79016) | |
| 596-792, gnl|bosTau2|chr11 (80494446-80494250) | |
| 596-792, gnl|Hg17|chr9 (129737831-129737635) | |
| 596-792, gnl|Mm7|chr2 (31040501-31040307) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| spl (0.143184) | |
| ebs (0.118301) |