Ss1.1-Mixn-0007g05.5
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TATCGGGACCAGAATAAGTATAAGGAAGCTGCCCATCTGCTGAATGATGCCCTCAGCATT
CGAGAGAGCACCCTGGGTCGGGACCACCCTGCTGTGGCCGCCACACTCAACAATCTGGCT
GTGCTCTATGGTAAGAGAGGCAAATACAAGGAGGCAGAGCCACTGTGCCAGCGGGCCCTG
GAGATTCGAGAAAAGGTCCTGGGCACTGACCACCCAGATGTGGCAAAGCAACTGAACAAC
CTGGCCCTGTTGTGCCAAAACCAGGGCAAGTATGAGGCCGTGGAACGCTATTACCGGCGG
GCACTGGCCATCTATGAGGGGCAGCTGGGGCCTGACAACCCTAACGTAGCCCGGACCAAG
AACAACCTGGCTTCCTGTTACCTGAAACAGGGCAAATATGCTGAGGCTGAGACGCTCTAT
AAAGAGATCCTGACCCGTGCCCACTTGCAGGAGTTTGGCTCTGTGGATGACAACCACAAG
CCCATCTGGATGCATGCAGAGGAGCGGGAGGCAATGAGCAAAAGCCCACACCGGGAGGGC
GGCACACCCTACGCTGAGTATGGAGGCTGGTACAAGGCCTGCAAAGTGAGCAGCCCCACC
GTGAACACGACTCTGAGGAACCTCGGAGCTCTGTACAGGTGCCAAGGAAAGCTGGAAGCA
GCTGAGACCCTGGAGGAGTGTGCCCTGCGCTCCTGGAAGCAGGGCACTGACCCGATCAGC
CAGACCAAGGTGGCTGAGCTGCTTGGGGAGGGTGACAGTGGAAGGACCTCCCAGGAGGGC
TTTGGGGGCAGCGTGAAATTCGAGGGAGGTGAAGATGCCTCAGTGGCTGTGGAGTGGTCA
GGGGATGGCAGCGGGGCCCTGCAGAGGAGCGGCTCTCTGGGCAAGATCCGAGATGTTCTC
CGTAGAAGCAGTGAGCTCCTGGTGAGGAAGCTCCAGGGGACCGAGCCCCGGCCCTCCAGC
AGCAACATGAAGCGGGCAGCCTCCTTGAACTATCTGAACCAACCCAATGCAACGCCCCTC
CAGGTCTCCCGAGGCCTCAGTGCCAGCAGTACGAATCTCTCTTCAAGCAGCTGACATTCA
AGCTCCCCTGCCTTCCCTGGGACCGGTGGGTCCCCAGCAGCCCTCACAGCATTCCCTGTG
GCTCCTGGCTCTTCCAACCCTACAGTGGGACAGTGAAGGGGGAGCAGTTAACCAGAAGAT
GCCCTCAGGGTCTCAGCTCCCTCCTCAGGAATCCCCCTCAGGAACCAACCTCAGGACACC
CTCTCCCCACCCTGTGGTCCTCTAGAGTGGCTCCATCTACTACTAGGGCCCCCAAAGTGG
GTAAAGAGCAGGTGTGCACCTCAGAGATGCAGCCTGTGGCTGGCTTTTCTGACAGAAGGT
TTGGGACTGGCCAGCTGACCTGTCTTGCCCTGGCCTCTCTTTTTCCCTCCAATGCTTCAC
TTCAGGTCCGTGTATTTCACTTTTCTTAAATAAAGGAATCAGGTAACCAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TATCGGGACCAGAATAAGTATAAGGAAGCTGCCCATCTGCTGAATGATGCCCTCAGCATT
CGAGAGAGCACCCTGGGTCGGGACCACCCTGCTGTGGCCGCCACACTCAACAATCTGGCT
GTGCTCTATGGTAAGAGAGGCAAATACAAGGAGGCAGAGCCACTGTGCCAGCGGGCCCTG
GAGATTCGAGAAAAGGTCCTGGGCACTGACCACCCAGATGTGGCAAAGCAACTGAACAAC
CTGGCCCTGTTGTGCCAAAACCAGGGCAAGTATGAGGCCGTGGAACGCTATTACCGGCGG
GCACTGGCCATCTATGAGGGGCAGCTGGGGCCTGACAACCCTAACGTAGCCCGGACCAAG
AACAACCTGGCTTCCTGTTACCTGAAACAGGGCAAATATGCTGAGGCTGAGACGCTCTAT
AAAGAGATCCTGACCCGTGCCCACTTGCAGGAGTTTGGCTCTGTGGATGACAACCACAAG
CCCATCTGGATGCATGCAGAGGAGCGGGAGGCAATGAGCAAAAGCCCACACCGGGAGGGC
GGCACACCCTACGCTGAGTATGGAGGCTGGTACAAGGCCTGCAAAGTGAGCAGCCCCACC
GTGAACACGACTCTGAGGAACCTCGGAGCTCTGTACAGGTGCCAAGGAAAGCTGGAAGCA
GCTGAGACCCTGGAGGAGTGTGCCCTGCGCTCCTGGAAGCAGGGCACTGACCCGATCAGC
CAGACCAAGGTGGCTGAGCTGCTTGGGGAGGGTGACAGTGGAAGGACCTCCCAGGAGGGC
TTTGGGGGCAGCGTGAAATTCGAGGGAGGTGAAGATGCCTCAGTGGCTGTGGAGTGGTCA
GGGGATGGCAGCGGGGCCCTGCAGAGGAGCGGCTCTCTGGGCAAGATCCGAGATGTTCTC
CGTAGAAGCAGTGAGCTCCTGGTGAGGAAGCTCCAGGGGACCGAGCCCCGGCCCTCCAGC
AGCAACATGAAGCGGGCAGCCTCCTTGAACTATCTGAACCAACCCAATGCAACGCCCCTC
CAGGTCTCCCGAGGCCTCAGTGCCAGCAGTACGAATCTCTCTTCAAGCAGCTGACATTCA
AGCTCCCCTGCCTTCCCTGGGACCGGTGGGTCCCCAGCAGCCCTCACAGCATTCCCTGTG
GCTCCTGGCTCTTCCAACCCTACAGTGGGACAGTGAAGGGGGAGCAGTTAACCAGAAGAT
GCCCTCAGGGTCTCAGCTCCCTCCTCAGGAATCCCCCTCAGGAACCAACCTCAGGACACC
CTCTCCCCACCCTGTGGTCCTCTAGAGTGGCTCCATCTACTACTAGGGCCCCCAAAGTGG
GTAAAGAGCAGGTGTGCACCTCAGAGATGCAGCCTGTGGCTGGCTTTTCTGACAGAAGGT
TTGGGACTGGCCAGCTGACCTGTCTTGCCCTGGCCTCTCTTTTTCCCTCCAATGCTTCAC
TTCAGGTCCGTGTATTTCACTTTTCTTAAATAAAGGAATCAGGTAACCAAAAAAAAAAAA
AAAAAAAAAAAA
|
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gi|7328160|emb|CAB82411.1| |
Protein identifier
|
gi|7328160|emb|CAB82411.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
194-370, gnl|bosTau2|chr18 (38518909-38518733) |
|
194-370, gnl|Hg17|chr19 (50544525-50544701) |
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194-370, gnl|Mm7|chr7 (17078349-17078173) |
| |
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700-844, gnl|bosTau2|chr23 (13110428-13110572) |
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700-844, gnl|canFam2|chr12 (14593291-14593460) |
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700-844, gnl|echTel1|scaffold_311398 (54445-54614) |
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700-844, gnl|fr1|chrUn (273505290-273505094) |
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700-844, gnl|hg17|chr6 (43148537-43148706) |
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700-844, gnl|Hg17|chr6 (43148537-43148681) |
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700-844, gnl|loxAfr1|scaffold_148454 (510-342) |
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700-844, gnl|mm7|chr17 (44761627-44761459) |
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700-844, gnl|Mm7|chr17 (44761625-44761481) |
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700-844, gnl|monDom2|scaffold_0 (198570591-198570440) |
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700-844, gnl|oryCun1|scaffold_173098 (63883-64048) |
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700-844, gnl|panTro1|chr5 (43746947-43747116) |
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700-844, gnl|rheMac2|chr4 (42961779-42961948) |
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700-844, gnl|rn3|chr9 (10001436-10001269) |
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700-844, gnl|tetNig1|chr17 (1556623-1556462) |
| |
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1021-1489, gnl|bosTau2|chr23 (13112228-13112697) |
|
1021-1489, gnl|Hg17|chr6 (43150335-43150808) |
|
1021-1489, gnl|Mm7|chr17 (44759808-44759359) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
194-370, gnl|bosTau2|chr18 (38518909-38518733) |
|
194-370, gnl|Hg17|chr19 (50544525-50544701) |
|
194-370, gnl|Mm7|chr7 (17078349-17078173) |
| |
|
700-844, gnl|bosTau2|chr23 (13110428-13110572) |
|
700-844, gnl|canFam2|chr12 (14593291-14593460) |
|
700-844, gnl|echTel1|scaffold_311398 (54445-54614) |
|
700-844, gnl|fr1|chrUn (273505290-273505094) |
|
700-844, gnl|hg17|chr6 (43148537-43148706) |
|
700-844, gnl|Hg17|chr6 (43148537-43148681) |
|
700-844, gnl|loxAfr1|scaffold_148454 (510-342) |
|
700-844, gnl|mm7|chr17 (44761627-44761459) |
|
700-844, gnl|Mm7|chr17 (44761625-44761481) |
|
700-844, gnl|monDom2|scaffold_0 (198570591-198570440) |
|
700-844, gnl|oryCun1|scaffold_173098 (63883-64048) |
|
700-844, gnl|panTro1|chr5 (43746947-43747116) |
|
700-844, gnl|rheMac2|chr4 (42961779-42961948) |
|
700-844, gnl|rn3|chr9 (10001436-10001269) |
|
700-844, gnl|tetNig1|chr17 (1556623-1556462) |
| |
|
1021-1489, gnl|bosTau2|chr23 (13112228-13112697) |
|
1021-1489, gnl|Hg17|chr6 (43150335-43150808) |
|
1021-1489, gnl|Mm7|chr17 (44759808-44759359) |
|
elu (0.385356) |
|
pla (0.267344) |
|
ece (0.229305) |
|
eye (0.170503) |
|
cki (0.165235) |
|
nco (0.161734) |
|
hyp (0.142837) |
|
cov (0.132153) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
elu (0.385356) |
|
pla (0.267344) |
|
ece (0.229305) |
|
eye (0.170503) |
|
cki (0.165235) |
|
nco (0.161734) |
|
hyp (0.142837) |
|
cov (0.132153) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
nbm (0.0993246) |
