Ss1.1-Mixn-0007g14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTAAGCCAAGCTCCTGCTGCACCTGCTCTCTGCCCATCTTGCTCCCACCATGAGCTGTC GCCTGCAGAGTTCCTCCGCCAGCTATGGAGGTGGCTTCGGGGGTGGCTCCTGCCAGCTGG GGGGAGGCCGCAGCATCTCGACCTGCTCATCCCGGTTTGTCTCTGGGGGATCCACCGGGG GCTACGGGGGCGGTGTAAGCTGCGGCTTCGGTGGCGGGGCTGGTAGTGGTTTTGGAGCTG GCTTTGGAGGCGGCTTTGGCGGTAGCTTTGGAGGTGGCTTCGGAGGTGGTGTCGCTGGGG GTTTTGGCTTCGGGGACTTCGGGGGTGGCGATGGCGGCCTCCTCGCTGGCAACGAGAAGA TCACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGAGAAGGTGCGCGCCCTGG AGGAGGCCAACACTGACCTGGAGGTGAAGATCCGTGACTGGTACCAGAAGCAGAGCCCCA GCAGCCCGGAGCGCGACTACAGCCCCTACTTCAAGACCATCGAGGAGCTCCGGGACAAGA TCCAGGCAGCCAACATCGAAAACAACCGGGTTGTTCTGCAAATTGACAACGCCAGGCTGG CTGCGGATGACTTCAGGCTCAAGTATGAGAACGAGCTGACCCTGCGCCAGAGCGTGGAGG CCGACATCAACGGCCTGCGCAGGGTGCTGGATGAGCTGACCTTGACCAAGACCGACCTGG AGATGCAGATCGAGAGCCTGAACGAGGAGCTGGCCTTCCTGAAGAAGAACCACGAGGAGG AGATGAAGGAGTTCAGCAACCGGGTGGTCGGCCAGGTCAACGTGGAGATGGACGCCACTC CCGGCGTGGACCTGACCCGCGTGCTGGCGGAGATGAGGGAGCAGTATGAGGCCATGGCTG AGAAGAACCGCCGGGAAGCCGAGGAATGGTTCAACAAAAAGATCGAGGAGCTGAATAAGG AGGTGATTTCCAGCACGGCCCTGATCCAGACCAGCAAGACGGAGATCACGGAGCTCAGGC GAACACTCCAGGGCCTGGAGATCGAGCTGCAGTCCCAGCTCAGCACGAAAGCGGGACTGG AGAACTCGCTGGCCGAGACGGAGTGTCGCTACGCCCTGCAGCTGCAGCAGATCCAGGGCC TCATCGGCAGCATTGAGGCCCAGCTGAGCGAGCTCCGCAGCGAGATGGAGTGCCAGAACC AGGAGTACAAGATGCTCCTGGACATCAAGACGCGGCTGGAGCAGGAGATCGCCACCTACC GCAGCCTGCTGGAGGGCCAGGACGCCAAGCTGACCGGCTTCGCCACAGGAGGAAACGTCA CCCACAGCGCCACCATCACCGCGAGCACCACTATCTCCAGTAGCGGTAGCAGCAATGGCC CCACACGCCGCACTTTAGAAAGCAGCAGGTCTTAAATTGGCCAGGCAGCCCCTCCCTCTG TCTTCAGCGCCCCACGAAAGAGGAGAGAGCTGACAGTCCTCCCCAGGGCGGGTGCATCCT GCCCTTCTTCGCAGAGTCTGCTTCCTCTTCTCCCTGACCTGGCTCCTTTGGTTTCTTGGC TTCTCTCCTAGAAAGGAAAGATCATTCAATAAAGTTTCCTGCCTTTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTAAGCCAAGCTCCTGCTGCACCTGCTCTCTGCCCATCTTGCTCCCACCATGAGCTGTC GCCTGCAGAGTTCCTCCGCCAGCTATGGAGGTGGCTTCGGGGGTGGCTCCTGCCAGCTGG GGGGAGGCCGCAGCATCTCGACCTGCTCATCCCGGTTTGTCTCTGGGGGATCCACCGGGG GCTACGGGGGCGGTGTAAGCTGCGGCTTCGGTGGCGGGGCTGGTAGTGGTTTTGGAGCTG GCTTTGGAGGCGGCTTTGGCGGTAGCTTTGGAGGTGGCTTCGGAGGTGGTGTCGCTGGGG GTTTTGGCTTCGGGGACTTCGGGGGTGGCGATGGCGGCCTCCTCGCTGGCAACGAGAAGA TCACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGAGAAGGTGCGCGCCCTGG AGGAGGCCAACACTGACCTGGAGGTGAAGATCCGTGACTGGTACCAGAAGCAGAGCCCCA GCAGCCCGGAGCGCGACTACAGCCCCTACTTCAAGACCATCGAGGAGCTCCGGGACAAGA TCCAGGCAGCCAACATCGAAAACAACCGGGTTGTTCTGCAAATTGACAACGCCAGGCTGG CTGCGGATGACTTCAGGCTCAAGTATGAGAACGAGCTGACCCTGCGCCAGAGCGTGGAGG CCGACATCAACGGCCTGCGCAGGGTGCTGGATGAGCTGACCTTGACCAAGACCGACCTGG AGATGCAGATCGAGAGCCTGAACGAGGAGCTGGCCTTCCTGAAGAAGAACCACGAGGAGG AGATGAAGGAGTTCAGCAACCGGGTGGTCGGCCAGGTCAACGTGGAGATGGACGCCACTC CCGGCGTGGACCTGACCCGCGTGCTGGCGGAGATGAGGGAGCAGTATGAGGCCATGGCTG AGAAGAACCGCCGGGAAGCCGAGGAATGGTTCAACAAAAAGATCGAGGAGCTGAATAAGG AGGTGATTTCCAGCACGGCCCTGATCCAGACCAGCAAGACGGAGATCACGGAGCTCAGGC GAACACTCCAGGGCCTGGAGATCGAGCTGCAGTCCCAGCTCAGCACGAAAGCGGGACTGG AGAACTCGCTGGCCGAGACGGAGTGTCGCTACGCCCTGCAGCTGCAGCAGATCCAGGGCC TCATCGGCAGCATTGAGGCCCAGCTGAGCGAGCTCCGCAGCGAGATGGAGTGCCAGAACC AGGAGTACAAGATGCTCCTGGACATCAAGACGCGGCTGGAGCAGGAGATCGCCACCTACC GCAGCCTGCTGGAGGGCCAGGACGCCAAGCTGACCGGCTTCGCCACAGGAGGAAACGTCA CCCACAGCGCCACCATCACCGCGAGCACCACTATCTCCAGTAGCGGTAGCAGCAATGGCC CCACACGCCGCACTTTAGAAAGCAGCAGGTCTTAAATTGGCCAGGCAGCCCCTCCCTCTG TCTTCAGCGCCCCACGAAAGAGGAGAGAGCTGACAGTCCTCCCCAGGGCGGGTGCATCCT GCCCTTCTTCGCAGAGTCTGCTTCCTCTTCTCCCTGACCTGGCTCCTTTGGTTTCTTGGC TTCTCTCCTAGAAAGGAAAGATCATTCAATAAAGTTTCCTGCCTTTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 42-241, + strand, RNAz p=0.658332 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-241, + strand, RNAz p=0.658332 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 4-539, gnl|bosTau2|chr23 (454195-454724) | |
| 4-539, gnl|Hg17|chr17 (36915371-36914834) | |
| 4-539, gnl|Mm7|chr11 (100230582-100230064) | |
| 161-529, gnl|bosTau2|chr19 (33814781-33815167) | |
| 161-529, gnl|Hg17|chr17 (36232166-36231747) | |
| 161-529, gnl|Mm7|chr11 (99498198-99497788) | |
| 228-469, gnl|bosTau2|chr19 (33898508-33898755) | |
| 228-469, gnl|Hg17|chr17 (36192154-36191907) | |
| 228-469, gnl|Mm7|chr11 (99460013-99459778) | |
| 619-783, gnl|bosTau2|chr19 (33816409-33816573) | |
| 619-783, gnl|Hg17|chr17 (36230449-36230285) | |
| 619-783, gnl|Mm7|chr11 (99496697-99496533) | |
| 810-941, gnl|bosTau2|chr19 (33773672-33773803) | |
| 810-941, gnl|canFam2|chr9 (25155934-25155786) | |
| 810-941, gnl|danRer3|chr19 (1222935-1223081) | |
| 810-941, gnl|dasNov1|scaffold_21574 (57473-57621) | |
| 810-941, gnl|echTel1|scaffold_284268 (38287-38139) | |
| 810-941, gnl|fr1|chrUn (253380164-253380011) | |
| 810-941, gnl|galGal2|chr27_random (546926-546776) | |
| 810-941, gnl|hg17|chr17 (36273470-36273618) | |
| 810-941, gnl|Hg17|chr17 (36273612-36273481) | |
| 810-941, gnl|loxAfr1|scaffold_41873 (6025-5877) | |
| 810-941, gnl|mm7|chr11 (99527518-99527661) | |
| 810-941, gnl|Mm7|chr11 (99527655-99527524) | |
| 810-941, gnl|monDom2|scaffold_18 (50370986-50371134) | |
| 810-941, gnl|oryCun1|scaffold_173998 (4780-4928) | |
| 810-941, gnl|panTro1|chr19 (39523233-39523381) | |
| 810-941, gnl|rheMac2|chr16 (50979794-50979942) | |
| 810-941, gnl|rn3|chr10 (88338934-88339077) | |
| 810-941, gnl|tetNig1|chr18 (5133528-5133663) | |
| 810-941, gnl|xenTro1|scaffold_574 (165120-164979) | |
| 948-1065, gnl|bosTau2|chr23 (456835-456952) | |
| 948-1065, gnl|canFam2|chr9 (24583541-24583454) | |
| 948-1065, gnl|danRer3|chr19 (1183108-1183195) | |
| 948-1065, gnl|dasNov1|scaffold_36607 (11721-11634) | |
| 948-1065, gnl|echTel1|scaffold_160490 (3817-3904) | |
| 948-1065, gnl|fr1|chrUn (253387999-253387912) | |
| 948-1065, gnl|galGal2|chr27_random (529490-529403) | |
| 948-1065, gnl|hg17|chr17 (36912464-36912551) | |
| 948-1065, gnl|Hg17|chr17 (36912584-36912467) | |
| 948-1065, gnl|loxAfr1|scaffold_16606 (7995-7908) | |
| 948-1065, gnl|mm7|chr11 (100228082-100228169) | |
| 948-1065, gnl|Mm7|chr11 (100228202-100228085) | |
| 948-1065, gnl|monDom2|scaffold_18 (51551630-51551717) | |
| 948-1065, gnl|oryCun1|scaffold_183352 (3241-3328) | |
| 948-1065, gnl|panTro1|chr19 (40112690-40112777) | |
| 948-1065, gnl|rheMac2|chr16 (51594794-51594881) | |
| 948-1065, gnl|rn3|chr10 (89073052-89073139) | |
| 948-1065, gnl|tetNig1|chr18 (5127274-5127361) | |
| 948-1065, gnl|xenTro1|scaffold_574 (308217-308130) | |
| 1067-1289, gnl|bosTau2|chr23 (457048-457270) | |
| 1067-1289, gnl|canFam2|chr9 (24583856-24583709) | |
| 1067-1289, gnl|danRer3|chr19 (1196708-1196856) | |
| 1067-1289, gnl|dasNov1|scaffold_36607 (12037-11890) | |
| 1067-1289, gnl|echTel1|scaffold_160490 (3410-3555) | |
| 1067-1289, gnl|fr1|chrUn (253388748-253388603) | |
| 1067-1289, gnl|galGal2|chr27_random (529902-529751) | |
| 1067-1289, gnl|hg17|chr17 (36912148-36912295) | |
| 1067-1289, gnl|Hg17|chr17 (36912373-36912151) | |
| 1067-1289, gnl|loxAfr1|scaffold_16606 (8310-8163) | |
| 1067-1289, gnl|mm7|chr11 (100227768-100227915) | |
| 1067-1289, gnl|Mm7|chr11 (100227993-100227771) | |
| 1067-1289, gnl|monDom2|scaffold_18 (51551309-51551456) | |
| 1067-1289, gnl|oryCun1|scaffold_130501 (245-98) | |
| 1067-1289, gnl|panTro1|chr19 (40112374-40112521) | |
| 1067-1289, gnl|rheMac2|chr16 (51594478-51594625) | |
| 1067-1289, gnl|rn3|chr10 (89072735-89072882) | |
| 1067-1289, gnl|tetNig1|chr18 (5126490-5126635) | |
| 1067-1289, gnl|xenTro1|scaffold_394 (349015-349160) | |
| 1077-1281, gnl|bosTau2|chr19 (33774142-33774346) | |
| 1077-1281, gnl|Hg17|chr17 (36273112-36272908) | |
| 1077-1281, gnl|Mm7|chr11 (99527165-99526961) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-539, gnl|bosTau2|chr23 (454195-454724) | |
| 4-539, gnl|Hg17|chr17 (36915371-36914834) | |
| 4-539, gnl|Mm7|chr11 (100230582-100230064) | |
| 161-529, gnl|bosTau2|chr19 (33814781-33815167) | |
| 161-529, gnl|Hg17|chr17 (36232166-36231747) | |
| 161-529, gnl|Mm7|chr11 (99498198-99497788) | |
| 228-469, gnl|bosTau2|chr19 (33898508-33898755) | |
| 228-469, gnl|Hg17|chr17 (36192154-36191907) | |
| 228-469, gnl|Mm7|chr11 (99460013-99459778) | |
| 619-783, gnl|bosTau2|chr19 (33816409-33816573) | |
| 619-783, gnl|Hg17|chr17 (36230449-36230285) | |
| 619-783, gnl|Mm7|chr11 (99496697-99496533) | |
| 810-941, gnl|bosTau2|chr19 (33773672-33773803) | |
| 810-941, gnl|canFam2|chr9 (25155934-25155786) | |
| 810-941, gnl|danRer3|chr19 (1222935-1223081) | |
| 810-941, gnl|dasNov1|scaffold_21574 (57473-57621) | |
| 810-941, gnl|echTel1|scaffold_284268 (38287-38139) | |
| 810-941, gnl|fr1|chrUn (253380164-253380011) | |
| 810-941, gnl|galGal2|chr27_random (546926-546776) | |
| 810-941, gnl|hg17|chr17 (36273470-36273618) | |
| 810-941, gnl|Hg17|chr17 (36273612-36273481) | |
| 810-941, gnl|loxAfr1|scaffold_41873 (6025-5877) | |
| 810-941, gnl|mm7|chr11 (99527518-99527661) | |
| 810-941, gnl|Mm7|chr11 (99527655-99527524) | |
| 810-941, gnl|monDom2|scaffold_18 (50370986-50371134) | |
| 810-941, gnl|oryCun1|scaffold_173998 (4780-4928) | |
| 810-941, gnl|panTro1|chr19 (39523233-39523381) | |
| 810-941, gnl|rheMac2|chr16 (50979794-50979942) | |
| 810-941, gnl|rn3|chr10 (88338934-88339077) | |
| 810-941, gnl|tetNig1|chr18 (5133528-5133663) | |
| 810-941, gnl|xenTro1|scaffold_574 (165120-164979) | |
| 948-1065, gnl|bosTau2|chr23 (456835-456952) | |
| 948-1065, gnl|canFam2|chr9 (24583541-24583454) | |
| 948-1065, gnl|danRer3|chr19 (1183108-1183195) | |
| 948-1065, gnl|dasNov1|scaffold_36607 (11721-11634) | |
| 948-1065, gnl|echTel1|scaffold_160490 (3817-3904) | |
| 948-1065, gnl|fr1|chrUn (253387999-253387912) | |
| 948-1065, gnl|galGal2|chr27_random (529490-529403) | |
| 948-1065, gnl|hg17|chr17 (36912464-36912551) | |
| 948-1065, gnl|Hg17|chr17 (36912584-36912467) | |
| 948-1065, gnl|loxAfr1|scaffold_16606 (7995-7908) | |
| 948-1065, gnl|mm7|chr11 (100228082-100228169) | |
| 948-1065, gnl|Mm7|chr11 (100228202-100228085) | |
| 948-1065, gnl|monDom2|scaffold_18 (51551630-51551717) | |
| 948-1065, gnl|oryCun1|scaffold_183352 (3241-3328) | |
| 948-1065, gnl|panTro1|chr19 (40112690-40112777) | |
| 948-1065, gnl|rheMac2|chr16 (51594794-51594881) | |
| 948-1065, gnl|rn3|chr10 (89073052-89073139) | |
| 948-1065, gnl|tetNig1|chr18 (5127274-5127361) | |
| 948-1065, gnl|xenTro1|scaffold_574 (308217-308130) | |
| 1067-1289, gnl|bosTau2|chr23 (457048-457270) | |
| 1067-1289, gnl|canFam2|chr9 (24583856-24583709) | |
| 1067-1289, gnl|danRer3|chr19 (1196708-1196856) | |
| 1067-1289, gnl|dasNov1|scaffold_36607 (12037-11890) | |
| 1067-1289, gnl|echTel1|scaffold_160490 (3410-3555) | |
| 1067-1289, gnl|fr1|chrUn (253388748-253388603) | |
| 1067-1289, gnl|galGal2|chr27_random (529902-529751) | |
| 1067-1289, gnl|hg17|chr17 (36912148-36912295) | |
| 1067-1289, gnl|Hg17|chr17 (36912373-36912151) | |
| 1067-1289, gnl|loxAfr1|scaffold_16606 (8310-8163) | |
| 1067-1289, gnl|mm7|chr11 (100227768-100227915) | |
| 1067-1289, gnl|Mm7|chr11 (100227993-100227771) | |
| 1067-1289, gnl|monDom2|scaffold_18 (51551309-51551456) | |
| 1067-1289, gnl|oryCun1|scaffold_130501 (245-98) | |
| 1067-1289, gnl|panTro1|chr19 (40112374-40112521) | |
| 1067-1289, gnl|rheMac2|chr16 (51594478-51594625) | |
| 1067-1289, gnl|rn3|chr10 (89072735-89072882) | |
| 1067-1289, gnl|tetNig1|chr18 (5126490-5126635) | |
| 1067-1289, gnl|xenTro1|scaffold_394 (349015-349160) | |
| 1077-1281, gnl|bosTau2|chr19 (33774142-33774346) | |
| 1077-1281, gnl|Hg17|chr17 (36273112-36272908) | |
| 1077-1281, gnl|Mm7|chr11 (99527165-99526961) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ton (37.908) | |
| eep (2.20615) | |
| eru (1.08043) | |
| rec (0.17307) | |
| eye (0.170503) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| ese (0.126502) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (37.908) | |
| eep (2.20615) | |
| eru (1.08043) | |
| rec (0.17307) | |
| eye (0.170503) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| ese (0.126502) |