Non-Coding RNA Search

Ss1.1-Mixn-0007g21.5

Sequence:


               
               AATTGCATAGTGAGATGGGGTGGGCGTGGAGGGGGACATAGGGTCAGGGGAGCCTAGGGG
GACGCGCACCCGCGCTGCAACTCCTCCTGTCCGCCTAGCCCGGCAGGGGGTCCCGGGGCC
TCTCCCTCCCATCCACGTGGTCAAGGACCACCTCCCAGGATGCTGTGGGGCCTGCGGGGA
GCAAGGCCCACAGGTGCAGGGGTGGGAGCAGATGTGGAGAGGTCACCGGGACGGGGCTGG
TTAGCAGAGGGCCTGAAAACTTGGAACATAAGTAAAACCGAGGGCGGATGCGCGCCCCTC
CAGGGCCAAGGCCGCTCTTGCCCCCCATTTGGCGTCCCCCTTTTCCTTTGTTCAGCCTCG
GTGAACGGAAGAAGCTCTGCGGAGTCACAGACGGGTGGCCACACACGCACACGAGGCACG
GGGGGCTCCGAGCGGCGCGGGCCCGCAGCCCGGCTCTCACGCTATGTACATTCACATTTC
GGCGGCCGCGCGGCGGGGCAGCCGCTTGTGCTTCTGAGCGCTGGCAAAGGGCTCGGCGCC
CGGGCGGCACTGCCCGCGCTGTCTCTCCCCCGGCCCGAGACCAGGCAGGAATGCTCCGCC
CGGGGTGGGGGACGGGGGCGGGGCCCAGAGACACTGGGCAGGTGGGCCGTGGCTCCGCCC
CTCGCTGAGGTTTGGCCAAGTGCTAGGGCTCAGACGCAGACTGGGGGCCTGCAGGCCGAC
CGGGGGCACCCTCGTTTTTGCCCACGCACTCCCCTCCCGTCCCAGGCCCCAGGAGTGGGG
TGGGCGTGGCCTAGTTCCAAGACCACGCCCCCTTTTGGTCCCAGCTACCAGCACAAAGGG
ATCACGGAGGAAGGGAGGTGGCCTCTCCCAGGCCACCCCGGGGAGGGGGCGCTGCCCTGC
TGCTCTGGGAGAAAGAGCCCATGTCTGTAAACTGCTGGGCCAGCGACCGCCTGCCCCTGG
GGCCTCGGCCTGGGCCCATACGTGGCTGCCGAGAGACCCTCTGCTGCCACTGGACTGACA
GGCCAGAGCCCACCCCTGGCCTCTCCATCTCAGGCTGGCTAGGCGGGCCTGGGGCTGGCA
GGGGGCTTCTCATCTTGATTTGGGGGCAGCCCTACCCTCTGTGGCAGGAAACACAGCAAA
CATTGTACACGAAGCCATAAGCACCTTGGGGAACCCTTGTTCCCACTTCACAGGTAGAGA
GACTGAGGCCGCAGGGACCTCGGTCCTACAGCCCAAAGGATGTTCCTTCCTGAGGACACC
GTCCCCCTGGGGTACTGCCTGCCCAGAGAGGGGTCTCCAGGCCCTTGAGCTGCCTTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTGCATAGTGAGATGGGGTGGGCGTGGAGGGGGACATAGGGTCAGGGGAGCCTAGGGG
GACGCGCACCCGCGCTGCAACTCCTCCTGTCCGCCTAGCCCGGCAGGGGGTCCCGGGGCC
TCTCCCTCCCATCCACGTGGTCAAGGACCACCTCCCAGGATGCTGTGGGGCCTGCGGGGA
GCAAGGCCCACAGGTGCAGGGGTGGGAGCAGATGTGGAGAGGTCACCGGGACGGGGCTGG
TTAGCAGAGGGCCTGAAAACTTGGAACATAAGTAAAACCGAGGGCGGATGCGCGCCCCTC
CAGGGCCAAGGCCGCTCTTGCCCCCCATTTGGCGTCCCCCTTTTCCTTTGTTCAGCCTCG
GTGAACGGAAGAAGCTCTGCGGAGTCACAGACGGGTGGCCACACACGCACACGAGGCACG
GGGGGCTCCGAGCGGCGCGGGCCCGCAGCCCGGCTCTCACGCTATGTACATTCACATTTC
GGCGGCCGCGCGGCGGGGCAGCCGCTTGTGCTTCTGAGCGCTGGCAAAGGGCTCGGCGCC
CGGGCGGCACTGCCCGCGCTGTCTCTCCCCCGGCCCGAGACCAGGCAGGAATGCTCCGCC
CGGGGTGGGGGACGGGGGCGGGGCCCAGAGACACTGGGCAGGTGGGCCGTGGCTCCGCCC
CTCGCTGAGGTTTGGCCAAGTGCTAGGGCTCAGACGCAGACTGGGGGCCTGCAGGCCGAC
CGGGGGCACCCTCGTTTTTGCCCACGCACTCCCCTCCCGTCCCAGGCCCCAGGAGTGGGG
TGGGCGTGGCCTAGTTCCAAGACCACGCCCCCTTTTGGTCCCAGCTACCAGCACAAAGGG
ATCACGGAGGAAGGGAGGTGGCCTCTCCCAGGCCACCCCGGGGAGGGGGCGCTGCCCTGC
TGCTCTGGGAGAAAGAGCCCATGTCTGTAAACTGCTGGGCCAGCGACCGCCTGCCCCTGG
GGCCTCGGCCTGGGCCCATACGTGGCTGCCGAGAGACCCTCTGCTGCCACTGGACTGACA
GGCCAGAGCCCACCCCTGGCCTCTCCATCTCAGGCTGGCTAGGCGGGCCTGGGGCTGGCA
GGGGGCTTCTCATCTTGATTTGGGGGCAGCCCTACCCTCTGTGGCAGGAAACACAGCAAA
CATTGTACACGAAGCCATAAGCACCTTGGGGAACCCTTGTTCCCACTTCACAGGTAGAGA
GACTGAGGCCGCAGGGACCTCGGTCCTACAGCCCAAAGGATGTTCCTTCCTGAGGACACC
GTCCCCCTGGGGTACTGCCTGCCCAGAGAGGGGTCTCCAGGCCCTTGAGCTGCCTTTCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               810-921, - strand, RNAz p=0.734762
               

               
               1111-1315, - strand, RNAz p=0.994739

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               810-921, - strand, RNAz p=0.734762
               

               
               1111-1315, - strand, RNAz p=0.994739

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1242-1331, - strand, RNAmicro p=0.999423

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1242-1331, - strand, RNAmicro p=0.999423

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of AK124608, -
               

               
               3' of AK124608, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK124608, -
               

               
               3' of AK124608, -

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               91-494, gnl|bosTau2|chr25 (39062221-39061833)
               

               
               91-494, gnl|Hg17|chr7 (2477001-2476595)
               

               
               91-494, gnl|Mm7|chr5 (139592094-139592562)
               


               
               657-1315, gnl|bosTau2|chr25 (39061674-39061037)
               

               
               657-1315, gnl|Hg17|chr7 (2476394-2475765)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-494, gnl|bosTau2|chr25 (39062221-39061833)
               

               
               91-494, gnl|Hg17|chr7 (2477001-2476595)
               

               
               91-494, gnl|Mm7|chr5 (139592094-139592562)
               


               
               657-1315, gnl|bosTau2|chr25 (39061674-39061037)
               

               
               657-1315, gnl|Hg17|chr7 (2476394-2475765)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eep (0.367692)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.367692)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	810-921, - strand, RNAz p=0.734762
	1111-1315, - strand, RNAz p=0.994739

	91-494, gnl\|bosTau2\|chr25 (39062221-39061833)
	91-494, gnl\|Hg17\|chr7 (2477001-2476595)
	91-494, gnl\|Mm7\|chr5 (139592094-139592562)

	657-1315, gnl\|bosTau2\|chr25 (39061674-39061037)
	657-1315, gnl\|Hg17\|chr7 (2476394-2475765)

	eep (0.367692)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	pla (0.133672)
	ebs (0.118301)