Non-Coding RNA Search

Ss1.1-Mixn-0007h24.5

Sequence:


               
               TCCATACCAAACCCCAAACTATGTTTATCCTATATTCTGTGACTTTTTTGATGATAGAAA
GTGGGTGTTATTCATTCTGTGGCTGGCATATGATCTGTCAAACAGTAGACATTCAATAAA
TGTGGTTGAATGTTATAATTAATATAGCAAATATTTGTCAGAATTATATGCTCCACACTT
CAAGTGTAGCCAGAGGTCATTGAGCTGGGAAAGTAAAGGAAATTTGGTTCATTAATATGA
CAGTTTTCAAATAAACTATTACAAAGCAATAAGGGGAAATATTTTAATAGATTTGAAGTA
GTAAATATGATGAGGACAGGAAGGGGAAAAATCGACTCTTTCCTTTATCCCTAGAATTTG
GAAACTTTTTACCAGATTGGTCAACTCTACTTTATTCTATTAAGAGAAGTATTGAGTGTT
TATAAATATAAGTCTTATGTTTGTACAGGTGAAGTTCTGTAGTTTGGCTTAAAACATCTT
TACATGAAGTTTTGCTTGGCATGAAAGGAGAGATTCCATTCTGTTCTGCAAGCATTAAAC
AAAAGTTCTATCTTATGTTCATTCCTCATATAGCACATGGGTATTTTCATCCCCCTACGT
ACAACACTCCAAAGAAATTTCTTTGGAGCTTATGCATAGGGCTATGGGAAGGCAACATTT
TGAGCAATGCCCGCCCCCCCTTTTTCAACACACAGGAACTGTCTCTAAGTTTGGTGCANG
TTTGAGGAATATTAAATTANGCTTCCATGNTGGTGAATCAGCATATTGATTTTTCTTGGN
CAGAAGCTTTCTGGAAATGTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCATACCAAACCCCAAACTATGTTTATCCTATATTCTGTGACTTTTTTGATGATAGAAA
GTGGGTGTTATTCATTCTGTGGCTGGCATATGATCTGTCAAACAGTAGACATTCAATAAA
TGTGGTTGAATGTTATAATTAATATAGCAAATATTTGTCAGAATTATATGCTCCACACTT
CAAGTGTAGCCAGAGGTCATTGAGCTGGGAAAGTAAAGGAAATTTGGTTCATTAATATGA
CAGTTTTCAAATAAACTATTACAAAGCAATAAGGGGAAATATTTTAATAGATTTGAAGTA
GTAAATATGATGAGGACAGGAAGGGGAAAAATCGACTCTTTCCTTTATCCCTAGAATTTG
GAAACTTTTTACCAGATTGGTCAACTCTACTTTATTCTATTAAGAGAAGTATTGAGTGTT
TATAAATATAAGTCTTATGTTTGTACAGGTGAAGTTCTGTAGTTTGGCTTAAAACATCTT
TACATGAAGTTTTGCTTGGCATGAAAGGAGAGATTCCATTCTGTTCTGCAAGCATTAAAC
AAAAGTTCTATCTTATGTTCATTCCTCATATAGCACATGGGTATTTTCATCCCCCTACGT
ACAACACTCCAAAGAAATTTCTTTGGAGCTTATGCATAGGGCTATGGGAAGGCAACATTT
TGAGCAATGCCCGCCCCCCCTTTTTCAACACACAGGAACTGTCTCTAAGTTTGGTGCANG
TTTGAGGAATATTAAATTANGCTTCCATGNTGGTGAATCAGCATATTGATTTTTCTTGGN
CAGAAGCTTTCTGGAAATGTCTAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               42-171, + strand, RNAz p=0.999306
               

               
               543-693, - strand, RNAz p=0.9964

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-171, + strand, RNAz p=0.999306
               

               
               543-693, - strand, RNAz p=0.9964

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-804, gnl|bosTau2|chr28 (7652366-7653219)
               

               
               3-804, gnl|Hg17|chr1 (236403540-236404455)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-804, gnl|bosTau2|chr28 (7652366-7653219)
               

               
               3-804, gnl|Hg17|chr1 (236403540-236404455)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	42-171, + strand, RNAz p=0.999306
	543-693, - strand, RNAz p=0.9964

	3-804, gnl\|bosTau2\|chr28 (7652366-7653219)
	3-804, gnl\|Hg17\|chr1 (236403540-236404455)