Ss1.1-Mixn-0007i22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGATGGCAACAGCACCAGATTCTCAGAGGCTAAAACTATTAAGAGAAGTAGCTGGTAC TAGAGTATATGATGAACGAAAAGAAGAAAGCATCTCTTTAATGAAGGAAACAGAGGGCAA ACGGGAAAAAATCAATGAGTTGTTAAAATACATTGAAGAGAGATTACATACCTTAGAGGA AGAAAAGGAAGAACTAGCTCAGTATCAGAAGTGGGATAAAATGAGACGAGCCCTGGAATA TACCATTTACAATCAGGAACTTAACGAGACTCGTGCTAAACTTGATGAGCTTTCTGCTAA ACGAGAGACGAGTGGAGAAAAATCCAGACAATTAAGAGATGCCCAGCAGGATGCAAGAGA TAAAATGGAGGATATTGAACGCCAAGTTAGAGAACTGAAAACAAAAATTTCAGCTATGAA AGAAGAAAAGGAGCAGCTCAGCGCTGAAAGACAAGAACAAATTAAGCAGAGGACTAAGTT GGAGCTTAAAGCCAAGGATTTACAAGATGAATTAGCAGGCAATAGTGAACAGAGGAAACG CTTATTAAAAGAAAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAACAGAAAGAACTGGC AGAAACAGAACCTAAATTCAACAGTGTAAAAGAAAAAGAAGAGCGAGGAATTGCCAGATT GGCCCAAGCTACCCAGGAAAGAACGGACCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTT TACATCAAAAGAAGAAAGGGATAAGTGGATTAAAAAGGAACTCAAGTCTTTAGATCAGGC TATTAATGACAAGAAAAGACAAATTGCTGCTATACATAAGGATTTGGAGGACACTGAGGC AAATAAAGAGAAAAATCTGGAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGATGGCAACAGCACCAGATTCTCAGAGGCTAAAACTATTAAGAGAAGTAGCTGGTAC TAGAGTATATGATGAACGAAAAGAAGAAAGCATCTCTTTAATGAAGGAAACAGAGGGCAA ACGGGAAAAAATCAATGAGTTGTTAAAATACATTGAAGAGAGATTACATACCTTAGAGGA AGAAAAGGAAGAACTAGCTCAGTATCAGAAGTGGGATAAAATGAGACGAGCCCTGGAATA TACCATTTACAATCAGGAACTTAACGAGACTCGTGCTAAACTTGATGAGCTTTCTGCTAA ACGAGAGACGAGTGGAGAAAAATCCAGACAATTAAGAGATGCCCAGCAGGATGCAAGAGA TAAAATGGAGGATATTGAACGCCAAGTTAGAGAACTGAAAACAAAAATTTCAGCTATGAA AGAAGAAAAGGAGCAGCTCAGCGCTGAAAGACAAGAACAAATTAAGCAGAGGACTAAGTT GGAGCTTAAAGCCAAGGATTTACAAGATGAATTAGCAGGCAATAGTGAACAGAGGAAACG CTTATTAAAAGAAAGGCAGAAGCTGCTTGAAAAAATAGAAGAAAAACAGAAAGAACTGGC AGAAACAGAACCTAAATTCAACAGTGTAAAAGAAAAAGAAGAGCGAGGAATTGCCAGATT GGCCCAAGCTACCCAGGAAAGAACGGACCTTTATGCAAAGCAGGGTCGAGGAAGCCAGTT TACATCAAAAGAAGAAAGGGATAAGTGGATTAAAAAGGAACTCAAGTCTTTAGATCAGGC TATTAATGACAAGAAAAGACAAATTGCTGCTATACATAAGGATTTGGAGGACACTGAGGC AAATAAAGAGAAAAATCTGGAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 369-487, + strand, RNAz p=0.974541 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 369-487, + strand, RNAz p=0.974541 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 112-289, gnl|bosTau2|chr26 (19155061-19154884) | |
| 112-289, gnl|Hg17|chr10 (112331669-112331846) | |
| 112-289, gnl|Mm7|chr19 (53521411-53521588) | |
| 369-535, gnl|bosTau2|chr26 (19154068-19153902) | |
| 369-535, gnl|canFam2|chr28 (24907926-24908098) | |
| 369-535, gnl|danRer3|chr22 (41017049-41017218) | |
| 369-535, gnl|dasNov1|scaffold_3267 (95309-95481) | |
| 369-535, gnl|echTel1|scaffold_253498 (9605-9773) | |
| 369-535, gnl|fr1|chrUn (300355237-300355065) | |
| 369-535, gnl|galGal2|chr6 (25063548-25063720) | |
| 369-535, gnl|hg17|chr10 (112333130-112333302) | |
| 369-535, gnl|Hg17|chr10 (112333130-112333296) | |
| 369-535, gnl|loxAfr1|scaffold_128 (291985-291813) | |
| 369-535, gnl|mm7|chr19 (53522732-53522904) | |
| 369-535, gnl|Mm7|chr19 (53522732-53522898) | |
| 369-535, gnl|monDom2|scaffold_14 (52612750-52612578) | |
| 369-535, gnl|panTro1|chr8 (114251976-114252148) | |
| 369-535, gnl|rheMac2|chr9 (110285785-110285957) | |
| 369-535, gnl|rn3|chr1 (260054175-260054347) | |
| 369-535, gnl|tetNig1|chr18 (2391351-2391523) | |
| 369-535, gnl|xenTro1|scaffold_510 (207034-206862) | |
| 656-864, gnl|bosTau2|chr26 (19152344-19152136) | |
| 656-864, gnl|canFam2|chr28 (24909811-24910095) | |
| 656-864, gnl|danRer3|chr22 (41021956-41022234) | |
| 656-864, gnl|dasNov1|scaffold_3267 (96630-96894) | |
| 656-864, gnl|echTel1|scaffold_253498 (11264-11553) | |
| 656-864, gnl|galGal2|chr6 (25064751-25065051) | |
| 656-864, gnl|hg17|chr10 (112333896-112334178) | |
| 656-864, gnl|Hg17|chr10 (112333929-112334137) | |
| 656-864, gnl|loxAfr1|scaffold_64243 (11623-11339) | |
| 656-864, gnl|mm7|chr19 (53524596-53524863) | |
| 656-864, gnl|Mm7|chr19 (53524629-53524837) | |
| 656-864, gnl|monDom2|scaffold_14 (52611095-52610795) | |
| 656-864, gnl|panTro1|chr8 (114252742-114253024) | |
| 656-864, gnl|rheMac2|chr9 (110286545-110286826) | |
| 656-864, gnl|rn3|chr1 (260056989-260057253) | |
| 656-864, gnl|tetNig1|chr18 (2392495-2392760) | |
| 656-864, gnl|xenTro1|scaffold_510 (200478-200185) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 112-289, gnl|bosTau2|chr26 (19155061-19154884) | |
| 112-289, gnl|Hg17|chr10 (112331669-112331846) | |
| 112-289, gnl|Mm7|chr19 (53521411-53521588) | |
| 369-535, gnl|bosTau2|chr26 (19154068-19153902) | |
| 369-535, gnl|canFam2|chr28 (24907926-24908098) | |
| 369-535, gnl|danRer3|chr22 (41017049-41017218) | |
| 369-535, gnl|dasNov1|scaffold_3267 (95309-95481) | |
| 369-535, gnl|echTel1|scaffold_253498 (9605-9773) | |
| 369-535, gnl|fr1|chrUn (300355237-300355065) | |
| 369-535, gnl|galGal2|chr6 (25063548-25063720) | |
| 369-535, gnl|hg17|chr10 (112333130-112333302) | |
| 369-535, gnl|Hg17|chr10 (112333130-112333296) | |
| 369-535, gnl|loxAfr1|scaffold_128 (291985-291813) | |
| 369-535, gnl|mm7|chr19 (53522732-53522904) | |
| 369-535, gnl|Mm7|chr19 (53522732-53522898) | |
| 369-535, gnl|monDom2|scaffold_14 (52612750-52612578) | |
| 369-535, gnl|panTro1|chr8 (114251976-114252148) | |
| 369-535, gnl|rheMac2|chr9 (110285785-110285957) | |
| 369-535, gnl|rn3|chr1 (260054175-260054347) | |
| 369-535, gnl|tetNig1|chr18 (2391351-2391523) | |
| 369-535, gnl|xenTro1|scaffold_510 (207034-206862) | |
| 656-864, gnl|bosTau2|chr26 (19152344-19152136) | |
| 656-864, gnl|canFam2|chr28 (24909811-24910095) | |
| 656-864, gnl|danRer3|chr22 (41021956-41022234) | |
| 656-864, gnl|dasNov1|scaffold_3267 (96630-96894) | |
| 656-864, gnl|echTel1|scaffold_253498 (11264-11553) | |
| 656-864, gnl|galGal2|chr6 (25064751-25065051) | |
| 656-864, gnl|hg17|chr10 (112333896-112334178) | |
| 656-864, gnl|Hg17|chr10 (112333929-112334137) | |
| 656-864, gnl|loxAfr1|scaffold_64243 (11623-11339) | |
| 656-864, gnl|mm7|chr19 (53524596-53524863) | |
| 656-864, gnl|Mm7|chr19 (53524629-53524837) | |
| 656-864, gnl|monDom2|scaffold_14 (52611095-52610795) | |
| 656-864, gnl|panTro1|chr8 (114252742-114253024) | |
| 656-864, gnl|rheMac2|chr9 (110286545-110286826) | |
| 656-864, gnl|rn3|chr1 (260056989-260057253) | |
| 656-864, gnl|tetNig1|chr18 (2392495-2392760) | |
| 656-864, gnl|xenTro1|scaffold_510 (200478-200185) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| thg (0.253582) | |
| cje (0.165235) | |
| ova (0.129132) | |
| spc (0.113366) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.253582) | |
| cje (0.165235) | |
| ova (0.129132) | |
| spc (0.113366) |