Ss1.1-Mixn-0007j15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCAGTGGCCGCCGGCGGCGTGGTCACCACGACCGCCTCGGGAAAGCGCATCCGG AAGAACCACGCCTGCGAGATGTGCGGCAAGGCCTTCCGCGACGTCTACCACCTGAACCGA CACAAGCTGTCGCACTCGGACGAGAAGCCCTACCAGTGCCCGGTGTGCTTGCAGGGACCT ACGGAGAGGCCTCGCATGAGCTACCACGTGCGCTCACATGACGGCGCTGTGCACAAGCCC CAAGACCCCTAACACTGTGGCAAGAGCTTCTCCCGGCCGGATCACCTCAACAGTCACGTC AGACAAGTGCACTCAACAGAACGGCCCTTCAAATGTGAGAAATGTGAGGCAGCTTTTGCT ACGAAGGATCGGCTGCGGGCCCACACAGTACGACACGAGGAGAAGGTGCCATGTCATGTG TGTGGCAAGATGTTGAGCTCGGCTTATATTTCGGACCACATGAAGGTTCACAGCCAGGGC CCTCACCATGTCTGTGAGCTCTGCAACAAAGGTACAGGTGAGGTCTGTCCAATGGCGGCG GCGGCGGCAGCAGCGGCGGCAGCGGCAGCGGCAGCAGTGGCAGCCCCTCCCACAGCTGTG GGCTCCCTCTCGGGGGCCGAGGGGGTGCCTGTGAGCTCTCAGCCACTTCCCTCCCAGCCC TGGTGAGCTCCAAGTTGGTGGGGGGAGAGGGGAGAATGGAGTAAAGTCCCTTGGTACCGT CTCCTCTTCCCTCTTTTTTCCCACCAACTCCTCACTACTTCCCCACCAACCAAGGAGCCT CCTGAAGGAAAGGAGGAAGAAATGTTTTCTTAGGGGAATTCGCTAGGTTTTAACGATTTG TTTCTCCTGCTCCTCTTTTCCCCCTATCAGACCTGACCCCACACACACCTGTTCCCTTGG TTGTGTTGAAGCCCCCTGGACAGTGGGCAGGGGTGGCAGAGGACAGGAGTGGCCACTGCC CTCACCCCCTCTCCTCTCTGCAACCCTCTGCCCTGCCCTTCCAGGGATTTGTGAGCCTTC TCCCTCCACGGTCCTTCTTGCTCTCCTCCTTCCAGTGCCCCCCTACTGTCTGCTGCCCCT CCCTGGGGAGTTGGTGCTTTTTTTTTTTTCCAGGGGGGAGGGAGGAGAGGAAGGAGGGAA ATCAAGGATTCTGTCCCAGAGAGGGGGGGAGAGGTGTGAGATGTGCGAAGGGGCAGGAAC AGGGAAGGCCAAGTTTGTACCTTCGTGACGTGGGGTGGTTTGGGGTCAGGCCCTAAACAT CATCCTCTTTGAGAATCTGTCAGGGGAAAACAAGTCAAGGGGAGCAAAAGAAGGAGCCAC TAGGGCCAGAGGCAGGACAAGAGATGGAACCTTAGGGGGGCAGGGTAAATGGGGGGATCC AGGGCCTAGAGGTGCTTCCTGGGGGTGGGGGGATGCAGCCACAGTGTCTCCCCTTCCCTC TTCCACCCCAGCTCCAGCCCTGGTCTTTTCTTTTCATCCCTCTCCCCCACGACTGAAGCT GTGGCCCTGGCCATGTCATCGTGTTCCTGTGTCCCCTGCATGTTCCCCACCCTTCACCCC CTCCTTTTGCGCGGACCCCATTACAATAAATTTTAAATAAAAACCTGAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCAGTGGCCGCCGGCGGCGTGGTCACCACGACCGCCTCGGGAAAGCGCATCCGG AAGAACCACGCCTGCGAGATGTGCGGCAAGGCCTTCCGCGACGTCTACCACCTGAACCGA CACAAGCTGTCGCACTCGGACGAGAAGCCCTACCAGTGCCCGGTGTGCTTGCAGGGACCT ACGGAGAGGCCTCGCATGAGCTACCACGTGCGCTCACATGACGGCGCTGTGCACAAGCCC CAAGACCCCTAACACTGTGGCAAGAGCTTCTCCCGGCCGGATCACCTCAACAGTCACGTC AGACAAGTGCACTCAACAGAACGGCCCTTCAAATGTGAGAAATGTGAGGCAGCTTTTGCT ACGAAGGATCGGCTGCGGGCCCACACAGTACGACACGAGGAGAAGGTGCCATGTCATGTG TGTGGCAAGATGTTGAGCTCGGCTTATATTTCGGACCACATGAAGGTTCACAGCCAGGGC CCTCACCATGTCTGTGAGCTCTGCAACAAAGGTACAGGTGAGGTCTGTCCAATGGCGGCG GCGGCGGCAGCAGCGGCGGCAGCGGCAGCGGCAGCAGTGGCAGCCCCTCCCACAGCTGTG GGCTCCCTCTCGGGGGCCGAGGGGGTGCCTGTGAGCTCTCAGCCACTTCCCTCCCAGCCC TGGTGAGCTCCAAGTTGGTGGGGGGAGAGGGGAGAATGGAGTAAAGTCCCTTGGTACCGT CTCCTCTTCCCTCTTTTTTCCCACCAACTCCTCACTACTTCCCCACCAACCAAGGAGCCT CCTGAAGGAAAGGAGGAAGAAATGTTTTCTTAGGGGAATTCGCTAGGTTTTAACGATTTG TTTCTCCTGCTCCTCTTTTCCCCCTATCAGACCTGACCCCACACACACCTGTTCCCTTGG TTGTGTTGAAGCCCCCTGGACAGTGGGCAGGGGTGGCAGAGGACAGGAGTGGCCACTGCC CTCACCCCCTCTCCTCTCTGCAACCCTCTGCCCTGCCCTTCCAGGGATTTGTGAGCCTTC TCCCTCCACGGTCCTTCTTGCTCTCCTCCTTCCAGTGCCCCCCTACTGTCTGCTGCCCCT CCCTGGGGAGTTGGTGCTTTTTTTTTTTTCCAGGGGGGAGGGAGGAGAGGAAGGAGGGAA ATCAAGGATTCTGTCCCAGAGAGGGGGGGAGAGGTGTGAGATGTGCGAAGGGGCAGGAAC AGGGAAGGCCAAGTTTGTACCTTCGTGACGTGGGGTGGTTTGGGGTCAGGCCCTAAACAT CATCCTCTTTGAGAATCTGTCAGGGGAAAACAAGTCAAGGGGAGCAAAAGAAGGAGCCAC TAGGGCCAGAGGCAGGACAAGAGATGGAACCTTAGGGGGGCAGGGTAAATGGGGGGATCC AGGGCCTAGAGGTGCTTCCTGGGGGTGGGGGGATGCAGCCACAGTGTCTCCCCTTCCCTC TTCCACCCCAGCTCCAGCCCTGGTCTTTTCTTTTCATCCCTCTCCCCCACGACTGAAGCT GTGGCCCTGGCCATGTCATCGTGTTCCTGTGTCCCCTGCATGTTCCCCACCCTTCACCCC CTCCTTTTGCGCGGACCCCATTACAATAAATTTTAAATAAAAACCTGAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 574-1492, - strand, RNAz p=0.999966 | |
| 888-1155, - strand, RNAz p=0.99989 | |
| 1030-1497, - strand, RNAz p=0.999983 | |
| 1372-1490, - strand, RNAz p=0.994927 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 574-1492, - strand, RNAz p=0.999966 | |
| 888-1155, - strand, RNAz p=0.99989 | |
| 1030-1497, - strand, RNAz p=0.999983 | |
| 1372-1490, - strand, RNAz p=0.994927 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 49-276, gnl|bosTau2|chr19 (4211383-4211156) | |
| 49-276, gnl|canFam2|chr9 (35994761-35994996) | |
| 49-276, gnl|canFam2|chr9 (35994766-35994958) | |
| 49-276, gnl|danRer3|chr15 (35825603-35825838) | |
| 49-276, gnl|danRer3|chr15 (35825609-35825800) | |
| 49-276, gnl|dasNov1|scaffold_101850 (6618-6845) | |
| 49-276, gnl|dasNov1|scaffold_101850 (6615-6807) | |
| 49-276, gnl|echTel1|scaffold_270988 (3951-3765) | |
| 49-276, gnl|echTel1|scaffold_317025 (82595-82801) | |
| 49-276, gnl|fr1|chrUn (11227327-11227092) | |
| 49-276, gnl|fr1|chrUn (11227322-11227130) | |
| 49-276, gnl|galGal2|chr19 (8266404-8266170) | |
| 49-276, gnl|galGal2|chr19 (8266400-8266208) | |
| 49-276, gnl|hg17|chr17 (53415057-53415292) | |
| 49-276, gnl|Hg17|chr17 (53415285-53415058) | |
| 49-276, gnl|hg17|chr3 (194356763-194356955) | |
| 49-276, gnl|loxAfr1|scaffold_22969 (648-420) | |
| 49-276, gnl|loxAfr1|scaffold_22969 (643-452) | |
| 49-276, gnl|mm7|chr11 (88143663-88143428) | |
| 49-276, gnl|mm7|chr11 (88143658-88143466) | |
| 49-276, gnl|Mm7|chr11 (88143433-88143660) | |
| 49-276, gnl|monDom2|scaffold_56 (5425145-5424910) | |
| 49-276, gnl|monDom2|scaffold_56 (5425140-5424948) | |
| 49-276, gnl|oryCun1|scaffold_204609 (85044-85279) | |
| 49-276, gnl|oryCun1|scaffold_204609 (85049-85241) | |
| 49-276, gnl|panTro1|chr19_random (39153674-39153909) | |
| 49-276, gnl|panTro1|chr2 (198463153-198463345) | |
| 49-276, gnl|rheMac2|chr16 (42210340-42210575) | |
| 49-276, gnl|rheMac2|chr16 (42210345-42210537) | |
| 49-276, gnl|rn3|chr10 (76380884-76380649) | |
| 49-276, gnl|rn3|chr10 (76380879-76380687) | |
| 49-276, gnl|tetNig1|chr7 (6038785-6039020) | |
| 49-276, gnl|tetNig1|chr7 (6038790-6038982) | |
| 49-276, gnl|xenTro1|scaffold_580 (91740-91974) | |
| 49-276, gnl|xenTro1|scaffold_580 (91744-91936) | |
| 324-542, gnl|bosTau2|chr1 (91595352-91595135) | |
| 324-542, gnl|Hg17|chr16 (29727390-29728929) | |
| 324-542, gnl|Mm7|chr7 (123121175-123119657) | |
| 574-1613, gnl|bosTau2|chr1 (91595142-91594117) | |
| 574-1613, gnl|Hg17|chr16 (29728922-29729986) | |
| 574-1613, gnl|Mm7|chr7 (123119703-123118688) | |
| 951-1604, gnl|bosTau2|chr18 (53290873-53290232) | |
| 951-1604, gnl|Hg17|chr16 (29729331-29729981) | |
| 951-1604, gnl|Mm7|chr7 (123119312-123118691) | |
| 1253-1357, gnl|bosTau2|chr11 (8730914-8730810) | |
| 1253-1357, gnl|Hg17|chr16 (29729637-29729738) | |
| 1253-1357, gnl|Mm7|chr7 (123119027-123118932) | |
| 1374-1600, gnl|bosTau2|chr11 (8730736-8730526) | |
| 1374-1600, gnl|Hg17|chr16 (29729754-29729981) | |
| 1374-1600, gnl|Mm7|chr7 (123118915-123118692) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-276, gnl|bosTau2|chr19 (4211383-4211156) | |
| 49-276, gnl|canFam2|chr9 (35994761-35994996) | |
| 49-276, gnl|canFam2|chr9 (35994766-35994958) | |
| 49-276, gnl|danRer3|chr15 (35825603-35825838) | |
| 49-276, gnl|danRer3|chr15 (35825609-35825800) | |
| 49-276, gnl|dasNov1|scaffold_101850 (6618-6845) | |
| 49-276, gnl|dasNov1|scaffold_101850 (6615-6807) | |
| 49-276, gnl|echTel1|scaffold_270988 (3951-3765) | |
| 49-276, gnl|echTel1|scaffold_317025 (82595-82801) | |
| 49-276, gnl|fr1|chrUn (11227327-11227092) | |
| 49-276, gnl|fr1|chrUn (11227322-11227130) | |
| 49-276, gnl|galGal2|chr19 (8266404-8266170) | |
| 49-276, gnl|galGal2|chr19 (8266400-8266208) | |
| 49-276, gnl|hg17|chr17 (53415057-53415292) | |
| 49-276, gnl|Hg17|chr17 (53415285-53415058) | |
| 49-276, gnl|hg17|chr3 (194356763-194356955) | |
| 49-276, gnl|loxAfr1|scaffold_22969 (648-420) | |
| 49-276, gnl|loxAfr1|scaffold_22969 (643-452) | |
| 49-276, gnl|mm7|chr11 (88143663-88143428) | |
| 49-276, gnl|mm7|chr11 (88143658-88143466) | |
| 49-276, gnl|Mm7|chr11 (88143433-88143660) | |
| 49-276, gnl|monDom2|scaffold_56 (5425145-5424910) | |
| 49-276, gnl|monDom2|scaffold_56 (5425140-5424948) | |
| 49-276, gnl|oryCun1|scaffold_204609 (85044-85279) | |
| 49-276, gnl|oryCun1|scaffold_204609 (85049-85241) | |
| 49-276, gnl|panTro1|chr19_random (39153674-39153909) | |
| 49-276, gnl|panTro1|chr2 (198463153-198463345) | |
| 49-276, gnl|rheMac2|chr16 (42210340-42210575) | |
| 49-276, gnl|rheMac2|chr16 (42210345-42210537) | |
| 49-276, gnl|rn3|chr10 (76380884-76380649) | |
| 49-276, gnl|rn3|chr10 (76380879-76380687) | |
| 49-276, gnl|tetNig1|chr7 (6038785-6039020) | |
| 49-276, gnl|tetNig1|chr7 (6038790-6038982) | |
| 49-276, gnl|xenTro1|scaffold_580 (91740-91974) | |
| 49-276, gnl|xenTro1|scaffold_580 (91744-91936) | |
| 324-542, gnl|bosTau2|chr1 (91595352-91595135) | |
| 324-542, gnl|Hg17|chr16 (29727390-29728929) | |
| 324-542, gnl|Mm7|chr7 (123121175-123119657) | |
| 574-1613, gnl|bosTau2|chr1 (91595142-91594117) | |
| 574-1613, gnl|Hg17|chr16 (29728922-29729986) | |
| 574-1613, gnl|Mm7|chr7 (123119703-123118688) | |
| 951-1604, gnl|bosTau2|chr18 (53290873-53290232) | |
| 951-1604, gnl|Hg17|chr16 (29729331-29729981) | |
| 951-1604, gnl|Mm7|chr7 (123119312-123118691) | |
| 1253-1357, gnl|bosTau2|chr11 (8730914-8730810) | |
| 1253-1357, gnl|Hg17|chr16 (29729637-29729738) | |
| 1253-1357, gnl|Mm7|chr7 (123119027-123118932) | |
| 1374-1600, gnl|bosTau2|chr11 (8730736-8730526) | |
| 1374-1600, gnl|Hg17|chr16 (29729754-29729981) | |
| 1374-1600, gnl|Mm7|chr7 (123118915-123118692) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| eep (0.61282) | |
| amn (0.417711) | |
| ebs (0.354904) | |
| med (0.348756) | |
| nca (0.273748) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.61282) | |
| amn (0.417711) | |
| ebs (0.354904) | |
| med (0.348756) | |
| nca (0.273748) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |