Non-Coding RNA Search

Ss1.1-Mixn-0007j20.5

Sequence:


               
               ACAGAGTGAAGGGCGAAGCGTGGAGCCGTGGGGTCTATGCGGATTTCTGGTCGGGGCGCC
CGCAGGCTGCCTGCCCGTGCTGCTGCTTCTGTCAGAGGCTCCCTTCTGGCGGGCCGCCTG
GTGGACAGCGCCCTGGTGCTGCCTTCCTTGCCCTGTCATTAGGCTCCCAGTGGCCTGGCG
TGGGGCAGTCCAGCCCCCTTCTCCCATGGGGGCAGAAAAGCAATAATGTCCAGGGACAGG
GGGTGAGGATAGAGGGTAGGGATGGGCCTTCTGGAAGCTGCGTGCAGGATGGGGGCTTAG
GGCTCCCTCACGTGGGTGGCGCCCCATCCTTCCTGTGGGGAACTAGGAGGGATTCTGGGG
GGTGGGTGCTGCCTGCTGGGCCTCCCCTGCCACCCGCACCCCCTCAGCTGCTCTCCTGAC
CCTGTGGAGGAGGCTAGCCTCCCCGCCCACCAGCCCCGTGCCTTACCAGGGCTTCCTTCC
AGCCGGCCTTACCTCCTGTTGCACCCCCGGCCTGGCCCTGGCCCCTTTTGAGGCGGGGGG
CACGGATCGTCCCCCTTCTCTCTGTCTGGGGCGGAGGGGTGCCAGCCTCAGCTGTTACAC
ATCTCGCACCGAGACAGTATTGGGCCCTGTGGACTTGGGTCAGAGAAGGGGTAGGGCAGG
TGTCTGGTACGTACTGGGTTGGGGGCCTCTGAGAAGGGAGGCTCCAGGCCGCCTCCCCAC
CCCTTCTCCGGGCCCCACATTCTGCAGCCTTAAGGTGAACCTGTCAGCGCTGTGGGCACT
TGGTGTGTGCCTCGGACTGTGTGTGTCTGTGGGTGTCCCTGTGCATCTGGGATGCAGGTG
CATGTGGGAGGTGTGTGTGCGTGTGTGTCGGGTATGTGTGTGTGAGGGCAAGTGTGTCCT
GGCCTCCGGTGTCCGTGGTCTGTGTGGCCCGCCCCACCCCCCGGCCCAAGCATTTCATCC
TGGCGGGGGGGATGTGCTGGCCAAGCAGGGGAGCCGTGCCTGAGGTCCACTCGTTGCCCT
GTGCCTCCCCTCCCCCCAGCATCTCTGGGTGTTTGGAGTTTTTGTGGTTTTGCTCTCCCC
ACCTCGCCTGTAGGCAGTTCACAGAGAGACATCGTGGGGTGGGGTGGGGTGGGGTGGGGC
TTGGTTTGGACGGGTGGGGTTCTTTTTTTTCTTTGTGTGTGTGTATGTCGTTAATCTGAC
AGTTCTCCTTCCTCCCCACTGGCCTGTCCTCGTCCCTCGTGTTTGTACGGTACAAGCAAT
AAAGACACTTGTTTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAGTGAAGGGCGAAGCGTGGAGCCGTGGGGTCTATGCGGATTTCTGGTCGGGGCGCC
CGCAGGCTGCCTGCCCGTGCTGCTGCTTCTGTCAGAGGCTCCCTTCTGGCGGGCCGCCTG
GTGGACAGCGCCCTGGTGCTGCCTTCCTTGCCCTGTCATTAGGCTCCCAGTGGCCTGGCG
TGGGGCAGTCCAGCCCCCTTCTCCCATGGGGGCAGAAAAGCAATAATGTCCAGGGACAGG
GGGTGAGGATAGAGGGTAGGGATGGGCCTTCTGGAAGCTGCGTGCAGGATGGGGGCTTAG
GGCTCCCTCACGTGGGTGGCGCCCCATCCTTCCTGTGGGGAACTAGGAGGGATTCTGGGG
GGTGGGTGCTGCCTGCTGGGCCTCCCCTGCCACCCGCACCCCCTCAGCTGCTCTCCTGAC
CCTGTGGAGGAGGCTAGCCTCCCCGCCCACCAGCCCCGTGCCTTACCAGGGCTTCCTTCC
AGCCGGCCTTACCTCCTGTTGCACCCCCGGCCTGGCCCTGGCCCCTTTTGAGGCGGGGGG
CACGGATCGTCCCCCTTCTCTCTGTCTGGGGCGGAGGGGTGCCAGCCTCAGCTGTTACAC
ATCTCGCACCGAGACAGTATTGGGCCCTGTGGACTTGGGTCAGAGAAGGGGTAGGGCAGG
TGTCTGGTACGTACTGGGTTGGGGGCCTCTGAGAAGGGAGGCTCCAGGCCGCCTCCCCAC
CCCTTCTCCGGGCCCCACATTCTGCAGCCTTAAGGTGAACCTGTCAGCGCTGTGGGCACT
TGGTGTGTGCCTCGGACTGTGTGTGTCTGTGGGTGTCCCTGTGCATCTGGGATGCAGGTG
CATGTGGGAGGTGTGTGTGCGTGTGTGTCGGGTATGTGTGTGTGAGGGCAAGTGTGTCCT
GGCCTCCGGTGTCCGTGGTCTGTGTGGCCCGCCCCACCCCCCGGCCCAAGCATTTCATCC
TGGCGGGGGGGATGTGCTGGCCAAGCAGGGGAGCCGTGCCTGAGGTCCACTCGTTGCCCT
GTGCCTCCCCTCCCCCCAGCATCTCTGGGTGTTTGGAGTTTTTGTGGTTTTGCTCTCCCC
ACCTCGCCTGTAGGCAGTTCACAGAGAGACATCGTGGGGTGGGGTGGGGTGGGGTGGGGC
TTGGTTTGGACGGGTGGGGTTCTTTTTTTTCTTTGTGTGTGTGTATGTCGTTAATCTGAC
AGTTCTCCTTCCTCCCCACTGGCCTGTCCTCGTCCCTCGTGTTTGTACGGTACAAGCAAT
AAAGACACTTGTTTCAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               138-326, + strand, RNAz p=0.997253
               

               
               433-629, - strand, RNAz p=0.999382
               

               
               1032-1138, - strand, RNAz p=0.618564
               

               
               1033-1144, - strand, RNAz p=0.996445

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-326, + strand, RNAz p=0.997253
               

               
               433-629, - strand, RNAz p=0.999382
               

               
               1032-1138, - strand, RNAz p=0.618564
               

               
               1033-1144, - strand, RNAz p=0.996445

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               539-604, + strand, RNAmicro p=0.990677
               

               
               1088-1153, + strand, RNAmicro p=0.961472

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               539-604, + strand, RNAmicro p=0.990677
               

               
               1088-1153, + strand, RNAmicro p=0.961472

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               138-687, gnl|bosTau2|chr18 (41336971-41336434)
               

               
               138-687, gnl|Hg17|chr19 (45431192-45430624)
               

               
               138-687, gnl|Mm7|chr7 (24557788-24558263)
               


               
               720-1276, gnl|bosTau2|chr18 (41336421-41335902)
               

               
               720-1276, gnl|canFam2|chr1 (116317087-116316742)
               

               
               720-1276, gnl|dasNov1|scaffold_9481 (1165-1484)
               

               
               720-1276, gnl|echTel1|scaffold_246360 (4254-4589)
               

               
               720-1276, gnl|hg17|chr19 (45430053-45430399)
               

               
               720-1276, gnl|Hg17|chr19 (45430611-45430083)
               

               
               720-1276, gnl|loxAfr1|scaffold_151926 (453-809)
               

               
               720-1276, gnl|mm7|chr7 (24558780-24558452)
               

               
               720-1276, gnl|Mm7|chr7 (24558270-24558749)
               

               
               720-1276, gnl|monDom2|scaffold_149 (39075-39496)
               

               
               720-1276, gnl|oryCun1|scaffold_145419 (6738-7052)
               

               
               720-1276, gnl|panTro1|chr20 (42365079-42365425)
               

               
               720-1276, gnl|rheMac2|chr19 (46588590-46588938)
               

               
               720-1276, gnl|rn3|chr1 (82805740-82805413)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-687, gnl|bosTau2|chr18 (41336971-41336434)
               

               
               138-687, gnl|Hg17|chr19 (45431192-45430624)
               

               
               138-687, gnl|Mm7|chr7 (24557788-24558263)
               


               
               720-1276, gnl|bosTau2|chr18 (41336421-41335902)
               

               
               720-1276, gnl|canFam2|chr1 (116317087-116316742)
               

               
               720-1276, gnl|dasNov1|scaffold_9481 (1165-1484)
               

               
               720-1276, gnl|echTel1|scaffold_246360 (4254-4589)
               

               
               720-1276, gnl|hg17|chr19 (45430053-45430399)
               

               
               720-1276, gnl|Hg17|chr19 (45430611-45430083)
               

               
               720-1276, gnl|loxAfr1|scaffold_151926 (453-809)
               

               
               720-1276, gnl|mm7|chr7 (24558780-24558452)
               

               
               720-1276, gnl|Mm7|chr7 (24558270-24558749)
               

               
               720-1276, gnl|monDom2|scaffold_149 (39075-39496)
               

               
               720-1276, gnl|oryCun1|scaffold_145419 (6738-7052)
               

               
               720-1276, gnl|panTro1|chr20 (42365079-42365425)
               

               
               720-1276, gnl|rheMac2|chr19 (46588590-46588938)
               

               
               720-1276, gnl|rn3|chr1 (82805740-82805413)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pla (0.401016)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	138-326, + strand, RNAz p=0.997253
	433-629, - strand, RNAz p=0.999382
	1032-1138, - strand, RNAz p=0.618564
	1033-1144, - strand, RNAz p=0.996445

	539-604, + strand, RNAmicro p=0.990677
	1088-1153, + strand, RNAmicro p=0.961472

	138-687, gnl\|bosTau2\|chr18 (41336971-41336434)
	138-687, gnl\|Hg17\|chr19 (45431192-45430624)
	138-687, gnl\|Mm7\|chr7 (24557788-24558263)

	720-1276, gnl\|bosTau2\|chr18 (41336421-41335902)
	720-1276, gnl\|canFam2\|chr1 (116317087-116316742)
	720-1276, gnl\|dasNov1\|scaffold_9481 (1165-1484)
	720-1276, gnl\|echTel1\|scaffold_246360 (4254-4589)
	720-1276, gnl\|hg17\|chr19 (45430053-45430399)
	720-1276, gnl\|Hg17\|chr19 (45430611-45430083)
	720-1276, gnl\|loxAfr1\|scaffold_151926 (453-809)
	720-1276, gnl\|mm7\|chr7 (24558780-24558452)
	720-1276, gnl\|Mm7\|chr7 (24558270-24558749)
	720-1276, gnl\|monDom2\|scaffold_149 (39075-39496)
	720-1276, gnl\|oryCun1\|scaffold_145419 (6738-7052)
	720-1276, gnl\|panTro1\|chr20 (42365079-42365425)
	720-1276, gnl\|rheMac2\|chr19 (46588590-46588938)
	720-1276, gnl\|rn3\|chr1 (82805740-82805413)

	pla (0.401016)
	ese (0.126502)
	cly (0.120642)
	jca (0.11396)
	cty (0.10408)