Non-Coding RNA Search

Ss1.1-Mixn-0007l02.5

Sequence:


               
               CCCCTTCCTCCTGGTGGAGGGAAGGCATGTGTTGGAGACCCTTCAACTCGACGGAGGCGT
CCCAGAGGCAAGACAAGCCGCGCTTCTGGGAGCAGAACTTGTGGCCCGTGCTTCCCACGG
GTGCGACCTTTGTATCCGGCCAGCAGAGCAGGGAAAGGAGACCTTGTGTCCTGGGGGCAG
GGGGAGTCGATCCTGTGATGGCCACAGCTCAGCCTCCAGCGGGGGGGCCCAGGGCCCTGC
CCGGGCTGTGACCGTGACTGTCACAGAGCCTTCGGAGAAGGAAAAGTCAAGCTTGCTCCC
CTGGTAGGAGATGCCAGAGACGCACACTCCAGAGATACCCGCCGGACACATGGGGTCGAA
GGTCAACCCTGCCCTGGTGATCCTGAACCCCGTGAACCCAAAGAGCACCGCCTGCAGGAA
GCCCCCCATGCCGGTCAGGAAGTTCACTGCACCTGAGCCATCTGCATTCTCGGTCCACAC
CTTGAAGGGCTCACTGGTGTTGGCGAAGCTCTTCTCCAGGAGGTCCCATGCCCGCCCAGG
CTCCTTCAGCTCCATCCAGCCCACGGCAAACATGCTCCAGGTCATGGCGGGGCCCTGGGG
ACACGTCACAGCCTCGTAAATCTCCAGGTTTTGCCTGCGCACAGTAGGACTCAGGGGAAA
GGGGACGGGGTAGCCCAGGAGCACGACGTCCGCCTGCTTCACCTCCTCTCCAGGCTGGTA
CCCATCAAATTCAGGGTAGAAGTTCAGCTTTGGGTCAAAGGGCACCTTGATCTTATCAGC
CACCTCCAGCCACTGGTTGGGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTTCCTCCTGGTGGAGGGAAGGCATGTGTTGGAGACCCTTCAACTCGACGGAGGCGT
CCCAGAGGCAAGACAAGCCGCGCTTCTGGGAGCAGAACTTGTGGCCCGTGCTTCCCACGG
GTGCGACCTTTGTATCCGGCCAGCAGAGCAGGGAAAGGAGACCTTGTGTCCTGGGGGCAG
GGGGAGTCGATCCTGTGATGGCCACAGCTCAGCCTCCAGCGGGGGGGCCCAGGGCCCTGC
CCGGGCTGTGACCGTGACTGTCACAGAGCCTTCGGAGAAGGAAAAGTCAAGCTTGCTCCC
CTGGTAGGAGATGCCAGAGACGCACACTCCAGAGATACCCGCCGGACACATGGGGTCGAA
GGTCAACCCTGCCCTGGTGATCCTGAACCCCGTGAACCCAAAGAGCACCGCCTGCAGGAA
GCCCCCCATGCCGGTCAGGAAGTTCACTGCACCTGAGCCATCTGCATTCTCGGTCCACAC
CTTGAAGGGCTCACTGGTGTTGGCGAAGCTCTTCTCCAGGAGGTCCCATGCCCGCCCAGG
CTCCTTCAGCTCCATCCAGCCCACGGCAAACATGCTCCAGGTCATGGCGGGGCCCTGGGG
ACACGTCACAGCCTCGTAAATCTCCAGGTTTTGCCTGCGCACAGTAGGACTCAGGGGAAA
GGGGACGGGGTAGCCCAGGAGCACGACGTCCGCCTGCTTCACCTCCTCTCCAGGCTGGTA
CCCATCAAATTCAGGGTAGAAGTTCAGCTTTGGGTCAAAGGGCACCTTGATCTTATCAGC
CACCTCCAGCCACTGGTTGGGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61809555|ref|XP_584788.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809555|ref|XP_584788.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               170-287, + strand, RNAz p=0.760802

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-287, + strand, RNAz p=0.760802

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               170-385, gnl|bosTau2|chr29 (45543536-45543321)
               

               
               170-385, gnl|canFam2|chr18 (28437383-28437541)
               

               
               170-385, gnl|galGal2|chr5 (1858613-1858758)
               

               
               170-385, gnl|hg17|chr11 (284250-284405)
               

               
               170-385, gnl|Hg17|chr11 (284479-284264)
               

               
               170-385, gnl|loxAfr1|scaffold_97937 (2486-2638)
               

               
               170-385, gnl|mm7|chr7 (137363750-137363903)
               

               
               170-385, gnl|Mm7|chr7 (137363977-137363762)
               

               
               170-385, gnl|oryCun1|scaffold_98147 (4393-4240)
               

               
               170-385, gnl|panTro1|chr9 (336387-336542)
               

               
               170-385, gnl|rheMac2|chr14 (104070-104225)
               

               
               170-385, gnl|rn3|chr1 (201276191-201276344)
               

               
               170-385, gnl|xenTro1|scaffold_521 (815688-815533)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-385, gnl|bosTau2|chr29 (45543536-45543321)
               

               
               170-385, gnl|canFam2|chr18 (28437383-28437541)
               

               
               170-385, gnl|galGal2|chr5 (1858613-1858758)
               

               
               170-385, gnl|hg17|chr11 (284250-284405)
               

               
               170-385, gnl|Hg17|chr11 (284479-284264)
               

               
               170-385, gnl|loxAfr1|scaffold_97937 (2486-2638)
               

               
               170-385, gnl|mm7|chr7 (137363750-137363903)
               

               
               170-385, gnl|Mm7|chr7 (137363977-137363762)
               

               
               170-385, gnl|oryCun1|scaffold_98147 (4393-4240)
               

               
               170-385, gnl|panTro1|chr9 (336387-336542)
               

               
               170-385, gnl|rheMac2|chr14 (104070-104225)
               

               
               170-385, gnl|rn3|chr1 (201276191-201276344)
               

               
               170-385, gnl|xenTro1|scaffold_521 (815688-815533)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	170-385, gnl\|bosTau2\|chr29 (45543536-45543321)
	170-385, gnl\|canFam2\|chr18 (28437383-28437541)
	170-385, gnl\|galGal2\|chr5 (1858613-1858758)
	170-385, gnl\|hg17\|chr11 (284250-284405)
	170-385, gnl\|Hg17\|chr11 (284479-284264)
	170-385, gnl\|loxAfr1\|scaffold_97937 (2486-2638)
	170-385, gnl\|mm7\|chr7 (137363750-137363903)
	170-385, gnl\|Mm7\|chr7 (137363977-137363762)
	170-385, gnl\|oryCun1\|scaffold_98147 (4393-4240)
	170-385, gnl\|panTro1\|chr9 (336387-336542)
	170-385, gnl\|rheMac2\|chr14 (104070-104225)
	170-385, gnl\|rn3\|chr1 (201276191-201276344)
	170-385, gnl\|xenTro1\|scaffold_521 (815688-815533)