Ss1.1-Mixn-0007l05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAATTGTCAGGAGCTTGCCCTCCGTAGAGACTCTGGGCTGCACCTCTGTCATTTGTTCC GATAAAACGGGCACCCTTACCACCAACCAGATGTCTGTCTGCAAGATGTTTGTCATCGAC AAGGTGGAAGGGGACATCTGCCTTCTGAACGAGTTCTCCATCACCGGCTCCACTTACGCT CCAGAAGGAGAGGTCTTGAAGAATGATAAGCCAGTCCGGGCAGGGCAGTATGATGGCCTG GTGGAGCTGGCCACCATTTGTGCCCTCTGCAATGACTCCTCCTTGGACTTCAACGAGGCC AAAGGTGTGTATGAGAAGGTGGGTGAGGCCACTGAGACAGCGCTCACCACCCTGGTGGAG AAGATGAACGTATTCAATACCGACGTGAGAAACCTCTCGAAGGTGGAGAGGGCCAACGCC TGCAACTCGGTGATTCGCCAGCTAATGAAGAAGGAATTCACACTGGAGTTCTCCCGGGAC AGAAAGTCCATGTCCGTCTATTGCTCTCCAGCTAAATCCCGGGCTGCTGTGGGCAACAAG ATGTTTGTCAAGGGCGCTCCCGAGGGGGTCATCGAGCGCTGTAACTACGTGCGGGTTGGT ACCACCCGGGTGCCGATGACAGGGCCGGTGAAGGAGAGGATTCTGTCGGTGATCAAGGAG TGGGGCACTGGCCGGGACACCCTGCGCTGCCTGGCCCTGGCCACCCGCGACACCCCCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAATTGTCAGGAGCTTGCCCTCCGTAGAGACTCTGGGCTGCACCTCTGTCATTTGTTCC GATAAAACGGGCACCCTTACCACCAACCAGATGTCTGTCTGCAAGATGTTTGTCATCGAC AAGGTGGAAGGGGACATCTGCCTTCTGAACGAGTTCTCCATCACCGGCTCCACTTACGCT CCAGAAGGAGAGGTCTTGAAGAATGATAAGCCAGTCCGGGCAGGGCAGTATGATGGCCTG GTGGAGCTGGCCACCATTTGTGCCCTCTGCAATGACTCCTCCTTGGACTTCAACGAGGCC AAAGGTGTGTATGAGAAGGTGGGTGAGGCCACTGAGACAGCGCTCACCACCCTGGTGGAG AAGATGAACGTATTCAATACCGACGTGAGAAACCTCTCGAAGGTGGAGAGGGCCAACGCC TGCAACTCGGTGATTCGCCAGCTAATGAAGAAGGAATTCACACTGGAGTTCTCCCGGGAC AGAAAGTCCATGTCCGTCTATTGCTCTCCAGCTAAATCCCGGGCTGCTGTGGGCAACAAG ATGTTTGTCAAGGGCGCTCCCGAGGGGGTCATCGAGCGCTGTAACTACGTGCGGGTTGGT ACCACCCGGGTGCCGATGACAGGGCCGGTGAAGGAGAGGATTCTGTCGGTGATCAAGGAG TGGGGCACTGGCCGGGACACCCTGCGCTGCCTGGCCCTGGCCACCCGCGACACCCCCCCA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 296-414, + strand, RNAz p=0.801755 | |
| 551-669, + strand, RNAz p=0.630694 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 296-414, + strand, RNAz p=0.801755 | |
| 551-669, + strand, RNAz p=0.630694 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 296-436, gnl|bosTau2|chr25 (24884187-24884047) | |
| 296-436, gnl|canFam2|chr6 (21406888-21407037) | |
| 296-436, gnl|danRer3|chr3 (18375014-18375163) | |
| 296-436, gnl|echTel1|scaffold_294319 (5905-5756) | |
| 296-436, gnl|fr1|chrUn (94520467-94520614) | |
| 296-436, gnl|galGal2|chr19 (3046153-3046300) | |
| 296-436, gnl|hg17|chr16 (28813632-28813782) | |
| 296-436, gnl|Hg17|chr16 (28813642-28813782) | |
| 296-436, gnl|loxAfr1|scaffold_45518 (6039-6185) | |
| 296-436, gnl|mm7|chr7 (122549358-122549209) | |
| 296-436, gnl|Mm7|chr7 (122549346-122549206) | |
| 296-436, gnl|monDom2|scaffold_5 (119379423-119379274) | |
| 296-436, gnl|oryCun1|scaffold_214919 (46489-46340) | |
| 296-436, gnl|panTro1|chr18 (29535620-29535769) | |
| 296-436, gnl|rheMac2|chr16 (3662868-3662717) | |
| 296-436, gnl|rn3|chr10 (59882541-59882696) | |
| 296-436, gnl|tetNig1|chr2 (5455247-5455108) | |
| 296-436, gnl|xenTro1|scaffold_352 (985316-985173) | |
| 551-719, gnl|bosTau2|chr25 (24882344-24882176) | |
| 551-719, gnl|Hg17|chr16 (28817053-28817221) | |
| 551-719, gnl|Mm7|chr7 (122546883-122546715) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 296-436, gnl|bosTau2|chr25 (24884187-24884047) | |
| 296-436, gnl|canFam2|chr6 (21406888-21407037) | |
| 296-436, gnl|danRer3|chr3 (18375014-18375163) | |
| 296-436, gnl|echTel1|scaffold_294319 (5905-5756) | |
| 296-436, gnl|fr1|chrUn (94520467-94520614) | |
| 296-436, gnl|galGal2|chr19 (3046153-3046300) | |
| 296-436, gnl|hg17|chr16 (28813632-28813782) | |
| 296-436, gnl|Hg17|chr16 (28813642-28813782) | |
| 296-436, gnl|loxAfr1|scaffold_45518 (6039-6185) | |
| 296-436, gnl|mm7|chr7 (122549358-122549209) | |
| 296-436, gnl|Mm7|chr7 (122549346-122549206) | |
| 296-436, gnl|monDom2|scaffold_5 (119379423-119379274) | |
| 296-436, gnl|oryCun1|scaffold_214919 (46489-46340) | |
| 296-436, gnl|panTro1|chr18 (29535620-29535769) | |
| 296-436, gnl|rheMac2|chr16 (3662868-3662717) | |
| 296-436, gnl|rn3|chr10 (59882541-59882696) | |
| 296-436, gnl|tetNig1|chr2 (5455247-5455108) | |
| 296-436, gnl|xenTro1|scaffold_352 (985316-985173) | |
| 551-719, gnl|bosTau2|chr25 (24882344-24882176) | |
| 551-719, gnl|Hg17|chr16 (28817053-28817221) | |
| 551-719, gnl|Mm7|chr7 (122546883-122546715) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| mas (0.210305) |