Non-Coding RNA Search

Ss1.1-Mixn-0007o15.5

Sequence:


               
               CACACAAGATCGCTGTTCCTGCGCAGGCAGCCTTTGCTTTCACAAAGGGTACGTTTCTGC
TAAACCTGACTGAAACGAACGCTCAGTCTCACACTCCCTTTCGTGTTTATTTTGGCAACT
GCATTTTGAGCATGACCACTCATTTTTTTCCCCCAACTAATGAAAATAATTTTGCATGGC
CTCCACCTAAACCCAGAAAGCATGCTCTTACTATCTATGCAAGCAATTAATAAGAAATAC
AGACTACTTAACACTCAATGTAAGGGTTAAAAAAAAAAAAAAAAAGACAACGCTTAGATT
ATGGAGCTCTATTTTTGTAATTTTTTAAATATGGCTTAATCAGTATCAAGAGCATGAATG
TGCTTTCGTGTTTGGATTTCTTGTTTGGCTTTGCACATATTTCTCTGCCGATTTTGGTTT
TTGGATCACAGGCAAGCTTGTGTGTAAAGTGCATATTTTGCAAACAGGAGTGGAATTGGG
TTATGTTGAACACACACTGGTTTATAATACCGTGTCTTTAGCCTGAAGACTTTCCTAAAG
AATTTTGTTCTAAAAATAACCTGCCATTTTTTATAGATCTTCATTTTTTATATCTTCTAG
GGTTCTCTCGTGGTCACAAGGGAAGAATGTGGCTTCTAATAGTGCTAACAATTTTCAAAC
ACTTTTGTAGAGACTTAGAGCTGTTCTGGAAAGCTTCGGAGCTTCCCAGCCACGGGTCAC
GAGGACGCTGTGGAGCTTGCGGTAGCGTTGACAGTGGACTTGGTTCTAGAGTCACCTCAC
ATTCATATGAAACCAGTGTTTGCCGATTTGGGGGAGCAGGCAGATCTCTCGCAGCCTTTT
TCAAACCTCACACGTGTACTCTCCCCTGGGTTCTGTCAAGCCTTTTCTGCAGTCTTGAGA
TTCTGGTACCCAACACCCACTAGAATCATCGAGGGAACTTTAAAAAAACGCCTGGGTCCC
ACTCCCCAACTTTTGATCTAGTTAGTGTAGGGCAGGGCCCAGGAATTCCCGTATGCATGT
AAAGCTCCTAGCTCTTTCTGCTTTGCAGTCAGACCTGAGAACCGCTGTGGCAACACCCTG
CCTTGGCTGAGAACTGCCGTGGGAAGGCCCCGGGAGCGACTCTTGTTTCCTCTGTTGCTT
TGGAGAAAGAAGAAAAGATGGTGAGCTTCTGACATCAACCCTGTCTGAGACAAGGGGGGC
TTCTGCTTCGAGCTCTGATTCAGGAGCTCAGAGCTTGCCCGCCTGGTGGGAGCCGGGGGT
CTTGAGTTTGCTGGAGTGTCCAGGGCGGGGGTGGGGGTTGCATCCTTCCCAGGACTTTTT
CTCTGGGCCAGACCCTTGTGGGAGGAAGGCAGTCGTCCAGAAATGCTGAGCCAAGGCTTC
CAGTGGCTTTGGAAAACCCGTCCTTGATTTCAATAAACCGATGGTCACTTTGTTGTCATT
ATAATAGCAAACCCTAGGCTGCTGCCCAGTGTCCTTCCTCTGTAGCTCACTCTGCTGTCT
AGAATGAAGTTTCAGGACTTTTGCTTTCTTTCTGTCTGTCTGTCTTTTTCGTTTAAAAGT
GAATGTGAAGCATTTTATGGGGGGTCTTTTTTTTCTTTGGCACCCTGGGTATTTTTTTCA
TGTCTTTAAAAAAAATCAAATCATAGTGCGCCCCACCTCGGGCCGTCTCTGTCACCTATG
GAGGCAGATGAAATTTAGTTTTAATCTGTGGTGAGCTGAGTGCACGACAATGTCTTCACG
ATAAGCTGCTGTGCTCCTCTGGCGGTTTCCCCCTGTGGAGGAGGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACAAGATCGCTGTTCCTGCGCAGGCAGCCTTTGCTTTCACAAAGGGTACGTTTCTGC
TAAACCTGACTGAAACGAACGCTCAGTCTCACACTCCCTTTCGTGTTTATTTTGGCAACT
GCATTTTGAGCATGACCACTCATTTTTTTCCCCCAACTAATGAAAATAATTTTGCATGGC
CTCCACCTAAACCCAGAAAGCATGCTCTTACTATCTATGCAAGCAATTAATAAGAAATAC
AGACTACTTAACACTCAATGTAAGGGTTAAAAAAAAAAAAAAAAAGACAACGCTTAGATT
ATGGAGCTCTATTTTTGTAATTTTTTAAATATGGCTTAATCAGTATCAAGAGCATGAATG
TGCTTTCGTGTTTGGATTTCTTGTTTGGCTTTGCACATATTTCTCTGCCGATTTTGGTTT
TTGGATCACAGGCAAGCTTGTGTGTAAAGTGCATATTTTGCAAACAGGAGTGGAATTGGG
TTATGTTGAACACACACTGGTTTATAATACCGTGTCTTTAGCCTGAAGACTTTCCTAAAG
AATTTTGTTCTAAAAATAACCTGCCATTTTTTATAGATCTTCATTTTTTATATCTTCTAG
GGTTCTCTCGTGGTCACAAGGGAAGAATGTGGCTTCTAATAGTGCTAACAATTTTCAAAC
ACTTTTGTAGAGACTTAGAGCTGTTCTGGAAAGCTTCGGAGCTTCCCAGCCACGGGTCAC
GAGGACGCTGTGGAGCTTGCGGTAGCGTTGACAGTGGACTTGGTTCTAGAGTCACCTCAC
ATTCATATGAAACCAGTGTTTGCCGATTTGGGGGAGCAGGCAGATCTCTCGCAGCCTTTT
TCAAACCTCACACGTGTACTCTCCCCTGGGTTCTGTCAAGCCTTTTCTGCAGTCTTGAGA
TTCTGGTACCCAACACCCACTAGAATCATCGAGGGAACTTTAAAAAAACGCCTGGGTCCC
ACTCCCCAACTTTTGATCTAGTTAGTGTAGGGCAGGGCCCAGGAATTCCCGTATGCATGT
AAAGCTCCTAGCTCTTTCTGCTTTGCAGTCAGACCTGAGAACCGCTGTGGCAACACCCTG
CCTTGGCTGAGAACTGCCGTGGGAAGGCCCCGGGAGCGACTCTTGTTTCCTCTGTTGCTT
TGGAGAAAGAAGAAAAGATGGTGAGCTTCTGACATCAACCCTGTCTGAGACAAGGGGGGC
TTCTGCTTCGAGCTCTGATTCAGGAGCTCAGAGCTTGCCCGCCTGGTGGGAGCCGGGGGT
CTTGAGTTTGCTGGAGTGTCCAGGGCGGGGGTGGGGGTTGCATCCTTCCCAGGACTTTTT
CTCTGGGCCAGACCCTTGTGGGAGGAAGGCAGTCGTCCAGAAATGCTGAGCCAAGGCTTC
CAGTGGCTTTGGAAAACCCGTCCTTGATTTCAATAAACCGATGGTCACTTTGTTGTCATT
ATAATAGCAAACCCTAGGCTGCTGCCCAGTGTCCTTCCTCTGTAGCTCACTCTGCTGTCT
AGAATGAAGTTTCAGGACTTTTGCTTTCTTTCTGTCTGTCTGTCTTTTTCGTTTAAAAGT
GAATGTGAAGCATTTTATGGGGGGTCTTTTTTTTCTTTGGCACCCTGGGTATTTTTTTCA
TGTCTTTAAAAAAAATCAAATCATAGTGCGCCCCACCTCGGGCCGTCTCTGTCACCTATG
GAGGCAGATGAAATTTAGTTTTAATCTGTGGTGAGCTGAGTGCACGACAATGTCTTCACG
ATAAGCTGCTGTGCTCCTCTGGCGGTTTCCCCCTGTGGAGGAGGATGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               374-489, + strand, RNAz p=0.540854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-489, + strand, RNAz p=0.540854

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               110-1786, gnl|bosTau2|chr25 (19041148-19039451)
               

               
               110-1786, gnl|Hg17|chr16 (22982708-22980997)
               

               
               110-1786, gnl|Mm7|chr7 (117566677-117565043)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-1786, gnl|bosTau2|chr25 (19041148-19039451)
               

               
               110-1786, gnl|Hg17|chr16 (22982708-22980997)
               

               
               110-1786, gnl|Mm7|chr7 (117566677-117565043)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spc (0.226732)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.226732)
               

               
               ebs (0.118301)

	110-1786, gnl\|bosTau2\|chr25 (19041148-19039451)
	110-1786, gnl\|Hg17\|chr16 (22982708-22980997)
	110-1786, gnl\|Mm7\|chr7 (117566677-117565043)