Non-Coding RNA Search

Ss1.1-Mixn-0007p12.5

Sequence:


               
               GCACCAGCACAGTCACACCATGTGCACAGCCGAGAGGCAAGTTTTTACACCATTTCTCAC
CAACGCATGGCATCTCTGCTTTCTGAGTGTGACCACGGGAGTGTGAGCCAGAATGAAGAT
GGGAATTAAAATGAGGAGAGGACGACCCACTTTACTGAGCACTTATTATGTGCCAGGTAC
TGTGCTAGGAGTACAAGTCGGACATGCCTGGGCCACAGCCTGGGTACCCCATCCTACCAA
TGGTGCTGGAACCTGCGGGTGGACTGCATCGGGCCCTCTACTACCCTTACTACAAGAGGT
GAAGACATATCTGGTATCATCTCCCAGGGCATCAGAAGAACTAAAGCAGGACCTGCGTCT
TGTACATCAAGGTGACCATAAGGTCCAAGGCCAAGAATATCAAAAGCACTCAAGATCGTG
TGCCAATTCATGTTTACAAGCCTTTGATCCCTTTGCTCCAAACTCTGGATGGTGTCACAG
TTCAAAGAACTGAGTCCAGTTCACAAGAGTCATTTCAAAAAGATTTCAGTGATATATTTC
AATTTGTAATACTGTAAGAGTCTTTGCCAAGCACAGAATACCTCTTTACCCCCCTCTTTT
CCTGCCATCTATGTTTAATGCAGTTAATTAAAAATTGTTTATCAATATCAACTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCAGCACAGTCACACCATGTGCACAGCCGAGAGGCAAGTTTTTACACCATTTCTCAC
CAACGCATGGCATCTCTGCTTTCTGAGTGTGACCACGGGAGTGTGAGCCAGAATGAAGAT
GGGAATTAAAATGAGGAGAGGACGACCCACTTTACTGAGCACTTATTATGTGCCAGGTAC
TGTGCTAGGAGTACAAGTCGGACATGCCTGGGCCACAGCCTGGGTACCCCATCCTACCAA
TGGTGCTGGAACCTGCGGGTGGACTGCATCGGGCCCTCTACTACCCTTACTACAAGAGGT
GAAGACATATCTGGTATCATCTCCCAGGGCATCAGAAGAACTAAAGCAGGACCTGCGTCT
TGTACATCAAGGTGACCATAAGGTCCAAGGCCAAGAATATCAAAAGCACTCAAGATCGTG
TGCCAATTCATGTTTACAAGCCTTTGATCCCTTTGCTCCAAACTCTGGATGGTGTCACAG
TTCAAAGAACTGAGTCCAGTTCACAAGAGTCATTTCAAAAAGATTTCAGTGATATATTTC
AATTTGTAATACTGTAAGAGTCTTTGCCAAGCACAGAATACCTCTTTACCCCCCTCTTTT
CCTGCCATCTATGTTTAATGCAGTTAATTAAAAATTGTTTATCAATATCAACTAAAAAAA

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-189, gnl|bosTau2|chr9 (41287297-41287109)
               

               
               1-189, gnl|Hg17|chr6 (133334327-133334140)
               


               
               348-646, gnl|bosTau2|chr9 (41281828-41281526)
               

               
               348-646, gnl|Hg17|chr6 (133330399-133330072)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-189, gnl|bosTau2|chr9 (41287297-41287109)
               

               
               1-189, gnl|Hg17|chr6 (133334327-133334140)
               


               
               348-646, gnl|bosTau2|chr9 (41281828-41281526)
               

               
               348-646, gnl|Hg17|chr6 (133330399-133330072)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ste (0.270416)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.270416)
               

               
               ldo (0.0970026)

	1-189, gnl\|bosTau2\|chr9 (41287297-41287109)
	1-189, gnl\|Hg17\|chr6 (133334327-133334140)

	348-646, gnl\|bosTau2\|chr9 (41281828-41281526)
	348-646, gnl\|Hg17\|chr6 (133330399-133330072)