Ss1.1-Mixn-0007p18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAACTCCGGCTCCAGCCTCCCGCTGTTCGACTGCCCGACCTGGGCAGGTAAACCCCCTC CTGGTTTACATCTGGATGTAGTCAAAGGAGACAAGCTAATTGAGAAACTGATTATTGATG AGAAGAAGTATTACTTATTTGGGAGAAACCCTGATTTGTGTGACTTTACCATTGACCACC AGTCTTGCTCTCGGGTCCACGCTGCCTTGGTCTACCACAAGCATCTGAAGAGAGTTTTCC TAATAGATCTCAACAGTACACACGGCACTTTCTTGGGTCACATTCGGTTGGAACCTCACA AGCCTCAGCAAATTCCCATCGATTCCACGGTCTCATTTGGTGCATCCACAAGGGCGTACA CTCTACGAGAGAAGCCTCAGACATTGCCATCGGCTGTGAAAGGAGATGAGAAGATGGGTG GAGAGGATGATGAACTCAAGGGCTTACTGGGGCTTCCAGAGGAGGAAACAGAGCTTGATA ACCTGACAGAGTTCAATACTGCCCACAACAAGCGTATTTCCACTCTCACCATTGAGGAGG GGAATCTGGACATTCAGAGACCAAAGAGGAAAAGGAAGAACTCACGGGTGACCTTCAGTG AGGATGATGAGATCATCAACCCAGAGGATGTGGATCCCTCAGTTGGTCGCTTCCGAAACA TGGTCCAGACTGCTGTGGTTCCAGTCAAGAAGAAGCGGGTGGAGGGCCCTGGCTCCCTGG GCCTGGAAGAAACAGGGAGCAGGCGCATGCAAAACTTTGCTTTCAGTGGAGGACTCTATG GGGGCCTGCCCCCCACGCACAGTGAAGCCGGCTCCCAGCCACACGGCATCCACGGGACAG CACTCATCGGTGGCTTGCCTATGCCATATCCAAACCTCGCTCCTGACGTGGACTTGACTC CCGTCGTGCCGTCAGCAGTGAACATGAACCCTGCTCCAAACCCTGCCGTCTATAACCCTG AAGCTGTCAACGAACCCAAGAAGAAGAAATATGCAAAAGAGGCTTGGCCGGGCAAGAAGC CCACACCTTCCTTACTGATTTGATATTTTTGGTCATGGAGGAGGGTGGGATTGGGTGGGA ATGGGGTGGAAGGGTGATGGGGGAGCTAATGAACTAGGGGAGAAAAACTTTCCATGTGTG CAGTATCGTCTTTCAGAATGTCTCCTGGGCTCCTAACCAAGTAATATTAAAACTGGGGGG GGAGGTTGGACTATCCCAGAAAGACCTGTCTTCAGAACACTTTCATCGTAGAGAAAATTT TTGTACGTTCTTTTCAGTAGACTTCCCTGGCTCTTTCCCAGGTCTTCCATTACCTCCTTT TTCTTTTCTCCCTCTTTCTAGGATCATTTTTATTTAAAGTCACATGTCCCAGGGAGAGAT TCCAGGCCCTCAGGTTGAATCCAGAGTTGTGGAGGTGACAACAGCATCACCAGCCTTGTG GGTCCAGCAGCCTAACTTACATTTACTATTTCTCCAAGTCGCAGGTAGCAGGAGGGTTGC CACGGAGTCCAGGCTGATTAACAAGAGGGTTAGAATTCTTCACTTAAGCTAATTTAAACT CAGAAGTGTTCTCCTGGGTCAGTGGTTTTGAGGTCCACTAGTTAGCCTTTTCTCTTTTGT CCTTTTCATTGGAATGAGAACATTTTGATTTTCCTTCATTTGTGACCAGTGCCATAGACA CAGGTTGATAGTTTTAAACTTACAATATTGTTTGAACTTGTTTTTCTTATTAAACCTGAG TACTCTTCTTGCCCAAGTTTCTCATTTGATTCTAGAGTACTCTTCTCTACTCTCTAAGGC ATTACTTTCCTTTTCGAGTGTGTTATGAAGGCAATTTCTAAAGGATATGACCAGTTAGAG CAATTCCAATTACAAAGGAAAATATTTTACTTTGAAGTAACGGGTGTCTCTAAGAGGACG TTTTTAGATGTTGGTTTGGAGGCTCTTTCCCCCCCTGGACCGAGAGCTCTCATTGTCAGA GCTCCCAGACTAGACCTGGCTAACAACCATAGCAGACGGAGATAGGAAACATTGGTATGA GCTTTGTACAGAGATTTGTACATTTGTGTAATAGGCCTTTTCACGCTTTATGTGTAGCTT TTTACCTGTAACCTTTATTACATTGTAAATTAAATGTAACTTTTGTCAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAACTCCGGCTCCAGCCTCCCGCTGTTCGACTGCCCGACCTGGGCAGGTAAACCCCCTC CTGGTTTACATCTGGATGTAGTCAAAGGAGACAAGCTAATTGAGAAACTGATTATTGATG AGAAGAAGTATTACTTATTTGGGAGAAACCCTGATTTGTGTGACTTTACCATTGACCACC AGTCTTGCTCTCGGGTCCACGCTGCCTTGGTCTACCACAAGCATCTGAAGAGAGTTTTCC TAATAGATCTCAACAGTACACACGGCACTTTCTTGGGTCACATTCGGTTGGAACCTCACA AGCCTCAGCAAATTCCCATCGATTCCACGGTCTCATTTGGTGCATCCACAAGGGCGTACA CTCTACGAGAGAAGCCTCAGACATTGCCATCGGCTGTGAAAGGAGATGAGAAGATGGGTG GAGAGGATGATGAACTCAAGGGCTTACTGGGGCTTCCAGAGGAGGAAACAGAGCTTGATA ACCTGACAGAGTTCAATACTGCCCACAACAAGCGTATTTCCACTCTCACCATTGAGGAGG GGAATCTGGACATTCAGAGACCAAAGAGGAAAAGGAAGAACTCACGGGTGACCTTCAGTG AGGATGATGAGATCATCAACCCAGAGGATGTGGATCCCTCAGTTGGTCGCTTCCGAAACA TGGTCCAGACTGCTGTGGTTCCAGTCAAGAAGAAGCGGGTGGAGGGCCCTGGCTCCCTGG GCCTGGAAGAAACAGGGAGCAGGCGCATGCAAAACTTTGCTTTCAGTGGAGGACTCTATG GGGGCCTGCCCCCCACGCACAGTGAAGCCGGCTCCCAGCCACACGGCATCCACGGGACAG CACTCATCGGTGGCTTGCCTATGCCATATCCAAACCTCGCTCCTGACGTGGACTTGACTC CCGTCGTGCCGTCAGCAGTGAACATGAACCCTGCTCCAAACCCTGCCGTCTATAACCCTG AAGCTGTCAACGAACCCAAGAAGAAGAAATATGCAAAAGAGGCTTGGCCGGGCAAGAAGC CCACACCTTCCTTACTGATTTGATATTTTTGGTCATGGAGGAGGGTGGGATTGGGTGGGA ATGGGGTGGAAGGGTGATGGGGGAGCTAATGAACTAGGGGAGAAAAACTTTCCATGTGTG CAGTATCGTCTTTCAGAATGTCTCCTGGGCTCCTAACCAAGTAATATTAAAACTGGGGGG GGAGGTTGGACTATCCCAGAAAGACCTGTCTTCAGAACACTTTCATCGTAGAGAAAATTT TTGTACGTTCTTTTCAGTAGACTTCCCTGGCTCTTTCCCAGGTCTTCCATTACCTCCTTT TTCTTTTCTCCCTCTTTCTAGGATCATTTTTATTTAAAGTCACATGTCCCAGGGAGAGAT TCCAGGCCCTCAGGTTGAATCCAGAGTTGTGGAGGTGACAACAGCATCACCAGCCTTGTG GGTCCAGCAGCCTAACTTACATTTACTATTTCTCCAAGTCGCAGGTAGCAGGAGGGTTGC CACGGAGTCCAGGCTGATTAACAAGAGGGTTAGAATTCTTCACTTAAGCTAATTTAAACT CAGAAGTGTTCTCCTGGGTCAGTGGTTTTGAGGTCCACTAGTTAGCCTTTTCTCTTTTGT CCTTTTCATTGGAATGAGAACATTTTGATTTTCCTTCATTTGTGACCAGTGCCATAGACA CAGGTTGATAGTTTTAAACTTACAATATTGTTTGAACTTGTTTTTCTTATTAAACCTGAG TACTCTTCTTGCCCAAGTTTCTCATTTGATTCTAGAGTACTCTTCTCTACTCTCTAAGGC ATTACTTTCCTTTTCGAGTGTGTTATGAAGGCAATTTCTAAAGGATATGACCAGTTAGAG CAATTCCAATTACAAAGGAAAATATTTTACTTTGAAGTAACGGGTGTCTCTAAGAGGACG TTTTTAGATGTTGGTTTGGAGGCTCTTTCCCCCCCTGGACCGAGAGCTCTCATTGTCAGA GCTCCCAGACTAGACCTGGCTAACAACCATAGCAGACGGAGATAGGAAACATTGGTATGA GCTTTGTACAGAGATTTGTACATTTGTGTAATAGGCCTTTTCACGCTTTATGTGTAGCTT TTTACCTGTAACCTTTATTACATTGTAAATTAAATGTAACTTTTGTCAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 480-639, + strand, RNAz p=0.930954 | |
| 688-886, - strand, RNAz p=0.873359 | |
| 967-1086, + strand, RNAz p=0.962811 | |
| 1286-1405, - strand, RNAz p=0.993054 | |
| 2031-2148, - strand, RNAz p=0.965887 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 480-639, + strand, RNAz p=0.930954 | |
| 688-886, - strand, RNAz p=0.873359 | |
| 967-1086, + strand, RNAz p=0.962811 | |
| 1286-1405, - strand, RNAz p=0.993054 | |
| 2031-2148, - strand, RNAz p=0.965887 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002713, + | |
| 3' of NM_002713, + |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 99-258, gnl|bosTau2|chr2 (76009378-76009537) | |
| 99-258, gnl|Hg17|chr1 (27849346-27849505) | |
| 99-258, gnl|Mm7|chr4 (132213229-132213070) | |
| 259-479, gnl|bosTau2|chr2 (76010916-76011136) | |
| 259-479, gnl|canFam2|chr2 (75419610-75419346) | |
| 259-479, gnl|danRer3|chr19 (39400884-39401125) | |
| 259-479, gnl|dasNov1|scaffold_69043 (3756-3945) | |
| 259-479, gnl|echTel1|scaffold_316771 (16803-16543) | |
| 259-479, gnl|galGal2|chr23 (1377481-1377730) | |
| 259-479, gnl|hg17|chr1 (27851641-27851901) | |
| 259-479, gnl|Hg17|chr1 (27851667-27851887) | |
| 259-479, gnl|mm7|chr4 (132211576-132211324) | |
| 259-479, gnl|Mm7|chr4 (132211550-132211330) | |
| 259-479, gnl|monDom2|scaffold_147 (264360-264610) | |
| 259-479, gnl|oryCun1|scaffold_184801 (4095-3835) | |
| 259-479, gnl|panTro1|chr1 (28540991-28541251) | |
| 259-479, gnl|rheMac2|chr1 (30535002-30535262) | |
| 259-479, gnl|rn3|chr5 (152325780-152326032) | |
| 259-479, gnl|tetNig1|chrUn_random (86050176-86050405) | |
| 259-479, gnl|xenTro1|scaffold_489 (13223-12966) | |
| 480-639, gnl|bosTau2|chr2 (76012671-76012830) | |
| 480-639, gnl|canFam2|chr2 (75418801-75418629) | |
| 480-639, gnl|danRer3|chr19 (39403884-39404032) | |
| 480-639, gnl|dasNov1|scaffold_30022 (9043-8871) | |
| 480-639, gnl|echTel1|scaffold_316771 (15002-14830) | |
| 480-639, gnl|fr1|chrUn (300733222-300733373) | |
| 480-639, gnl|galGal2|chr23 (1378384-1378557) | |
| 480-639, gnl|hg17|chr1 (27853816-27853989) | |
| 480-639, gnl|Hg17|chr1 (27853839-27853998) | |
| 480-639, gnl|loxAfr1|scaffold_52940 (3460-3633) | |
| 480-639, gnl|mm7|chr4 (132209227-132209054) | |
| 480-639, gnl|Mm7|chr4 (132209202-132209052) | |
| 480-639, gnl|monDom2|scaffold_147 (267112-267285) | |
| 480-639, gnl|oryCun1|scaffold_184801 (2490-2319) | |
| 480-639, gnl|panTro1|chr1 (28543165-28543338) | |
| 480-639, gnl|rheMac2|chr1 (30537499-30537672) | |
| 480-639, gnl|rn3|chr5 (152328173-152328346) | |
| 480-639, gnl|tetNig1|chrUn_random (86050682-86050830) | |
| 480-639, gnl|xenTro1|scaffold_489 (9605-9432) | |
| 688-2148, gnl|bosTau2|chr2 (76018865-76020310) | |
| 688-2148, gnl|Hg17|chr1 (27860744-27862181) | |
| 688-2148, gnl|Mm7|chr4 (132206641-132205363) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 99-258, gnl|bosTau2|chr2 (76009378-76009537) | |
| 99-258, gnl|Hg17|chr1 (27849346-27849505) | |
| 99-258, gnl|Mm7|chr4 (132213229-132213070) | |
| 259-479, gnl|bosTau2|chr2 (76010916-76011136) | |
| 259-479, gnl|canFam2|chr2 (75419610-75419346) | |
| 259-479, gnl|danRer3|chr19 (39400884-39401125) | |
| 259-479, gnl|dasNov1|scaffold_69043 (3756-3945) | |
| 259-479, gnl|echTel1|scaffold_316771 (16803-16543) | |
| 259-479, gnl|galGal2|chr23 (1377481-1377730) | |
| 259-479, gnl|hg17|chr1 (27851641-27851901) | |
| 259-479, gnl|Hg17|chr1 (27851667-27851887) | |
| 259-479, gnl|mm7|chr4 (132211576-132211324) | |
| 259-479, gnl|Mm7|chr4 (132211550-132211330) | |
| 259-479, gnl|monDom2|scaffold_147 (264360-264610) | |
| 259-479, gnl|oryCun1|scaffold_184801 (4095-3835) | |
| 259-479, gnl|panTro1|chr1 (28540991-28541251) | |
| 259-479, gnl|rheMac2|chr1 (30535002-30535262) | |
| 259-479, gnl|rn3|chr5 (152325780-152326032) | |
| 259-479, gnl|tetNig1|chrUn_random (86050176-86050405) | |
| 259-479, gnl|xenTro1|scaffold_489 (13223-12966) | |
| 480-639, gnl|bosTau2|chr2 (76012671-76012830) | |
| 480-639, gnl|canFam2|chr2 (75418801-75418629) | |
| 480-639, gnl|danRer3|chr19 (39403884-39404032) | |
| 480-639, gnl|dasNov1|scaffold_30022 (9043-8871) | |
| 480-639, gnl|echTel1|scaffold_316771 (15002-14830) | |
| 480-639, gnl|fr1|chrUn (300733222-300733373) | |
| 480-639, gnl|galGal2|chr23 (1378384-1378557) | |
| 480-639, gnl|hg17|chr1 (27853816-27853989) | |
| 480-639, gnl|Hg17|chr1 (27853839-27853998) | |
| 480-639, gnl|loxAfr1|scaffold_52940 (3460-3633) | |
| 480-639, gnl|mm7|chr4 (132209227-132209054) | |
| 480-639, gnl|Mm7|chr4 (132209202-132209052) | |
| 480-639, gnl|monDom2|scaffold_147 (267112-267285) | |
| 480-639, gnl|oryCun1|scaffold_184801 (2490-2319) | |
| 480-639, gnl|panTro1|chr1 (28543165-28543338) | |
| 480-639, gnl|rheMac2|chr1 (30537499-30537672) | |
| 480-639, gnl|rn3|chr5 (152328173-152328346) | |
| 480-639, gnl|tetNig1|chrUn_random (86050682-86050830) | |
| 480-639, gnl|xenTro1|scaffold_489 (9605-9432) | |
| 688-2148, gnl|bosTau2|chr2 (76018865-76020310) | |
| 688-2148, gnl|Hg17|chr1 (27860744-27862181) | |
| 688-2148, gnl|Mm7|chr4 (132206641-132205363) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| thg (0.380373) | |
| cte (0.29274) | |
| ova (0.258264) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.380373) | |
| cte (0.29274) | |
| ova (0.258264) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| cbl (0.114797) | |
| spc (0.113366) |