Ss1.1-Mixn-0008b08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGTGCCCATGCCTCCCTCTGCCCCTCCTATTATGGCACCCCGCCCACCACCCATGATT GTGCCAACAGCCTTTGTACCTGCACCACCTGTGGCACCTGTCCCAGCCCCAGCCCCAATG CCACCTGTCCATCCCCCACCTCCCATGGAAGATGAACCTGCCTCCAAGAAACTAAAGACT GAAGATAGTCTCATGCCTGAGGAAGAGTTCCTACGCAGAAACAAGGGTCCAGTGTCCATC AAAGTCCAAGTGCCCAACATGCAGGATAAGACCGAATGGAAGCTTAACGGACAGGTGCTG GTCTTCACCCTTCCACTCACAGACCAGGTCTCTGTTATTAAGGTGAAGATTCATGAAGCC ACGGGCATGCCAGCAGGGAAACAGAAGCTACAGTATGAGGGCATTTTCATCAAGGATTCC AACTCGCTGGCTTACTACAACATGGCCAATGGTGCCGTCATCCACCTGGCCCTCAAGGAG AGAGGCGGGAGGAAGAAGTAGAAGAGAGAAACCTACTGTCAGGTCCCACCACTGCCGTTT TGCCTTTCTTGTGTCCCGTGTCATCATCGTTCCCCCCTCCCCTCACCCTGTCCTAGACTC AGGAGACCCTGCCTTGCACATTTGTTTCCCTCTTATTAAGTTCGGAAATTCAAACTGTCC TACAGAGTATTCTCCTCCCGCCCCCCCCCCCCCAATTGATAGAATAAGAGAGGATTTTCT CAGCCATTCTCCTCCCCAGTAGCCCCTGGAATCCCTTTGTGTTCAGGTGATTTGAGGGGA TTCATTTCTCGAAGCAGCCCATTAAGAAATGTGAACCCATGGATGTCCTGTGAATATTAT CGTAGTGCCAGAGTGGCGCTTGCCTGGTAGACTGTTGTTGTTATCATCATCCTTGATCAT TTTGTGTCTTGCCATCGGCTAATAAACCTCTTGGACGACCATTCTTGTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGTGCCCATGCCTCCCTCTGCCCCTCCTATTATGGCACCCCGCCCACCACCCATGATT GTGCCAACAGCCTTTGTACCTGCACCACCTGTGGCACCTGTCCCAGCCCCAGCCCCAATG CCACCTGTCCATCCCCCACCTCCCATGGAAGATGAACCTGCCTCCAAGAAACTAAAGACT GAAGATAGTCTCATGCCTGAGGAAGAGTTCCTACGCAGAAACAAGGGTCCAGTGTCCATC AAAGTCCAAGTGCCCAACATGCAGGATAAGACCGAATGGAAGCTTAACGGACAGGTGCTG GTCTTCACCCTTCCACTCACAGACCAGGTCTCTGTTATTAAGGTGAAGATTCATGAAGCC ACGGGCATGCCAGCAGGGAAACAGAAGCTACAGTATGAGGGCATTTTCATCAAGGATTCC AACTCGCTGGCTTACTACAACATGGCCAATGGTGCCGTCATCCACCTGGCCCTCAAGGAG AGAGGCGGGAGGAAGAAGTAGAAGAGAGAAACCTACTGTCAGGTCCCACCACTGCCGTTT TGCCTTTCTTGTGTCCCGTGTCATCATCGTTCCCCCCTCCCCTCACCCTGTCCTAGACTC AGGAGACCCTGCCTTGCACATTTGTTTCCCTCTTATTAAGTTCGGAAATTCAAACTGTCC TACAGAGTATTCTCCTCCCGCCCCCCCCCCCCCAATTGATAGAATAAGAGAGGATTTTCT CAGCCATTCTCCTCCCCAGTAGCCCCTGGAATCCCTTTGTGTTCAGGTGATTTGAGGGGA TTCATTTCTCGAAGCAGCCCATTAAGAAATGTGAACCCATGGATGTCCTGTGAATATTAT CGTAGTGCCAGAGTGGCGCTTGCCTGGTAGACTGTTGTTGTTATCATCATCCTTGATCAT TTTGTGTCTTGCCATCGGCTAATAAACCTCTTGGACGACCATTCTTGTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 108-226, + strand, RNAz p=0.793405 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 108-226, + strand, RNAz p=0.793405 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 68-226, gnl|bosTau2|chr17 (42544933-42544775) | |
| 68-226, gnl|canFam2|chr26 (26517751-26517875) | |
| 68-226, gnl|danRer3|chr8 (33117611-33117484) | |
| 68-226, gnl|dasNov1|scaffold_5013 (51221-51346) | |
| 68-226, gnl|echTel1|scaffold_236764 (1228-1348) | |
| 68-226, gnl|fr1|chrUn (48523417-48523293) | |
| 68-226, gnl|galGal2|chr15 (10717681-10717562) | |
| 68-226, gnl|hg17|chr22 (29057564-29057688) | |
| 68-226, gnl|Hg17|chr22 (29057726-29057568) | |
| 68-226, gnl|loxAfr1|scaffold_42930 (929-1043) | |
| 68-226, gnl|mm7|chr11 (4130235-4130111) | |
| 68-226, gnl|Mm7|chr11 (4130071-4130229) | |
| 68-226, gnl|monDom2|scaffold_89 (4645826-4645950) | |
| 68-226, gnl|oryCun1|scaffold_130691 (806-922) | |
| 68-226, gnl|panTro1|chr23 (29152440-29152564) | |
| 68-226, gnl|rheMac2|chr10 (74189670-74189794) | |
| 68-226, gnl|rn3|chr14 (84821628-84821504) | |
| 68-226, gnl|tetNig1|chrUn_random (34370514-34370390) | |
| 68-226, gnl|xenTro1|scaffold_207 (925505-925629) | |
| 398-551, gnl|bosTau2|chr17 (42542881-42542732) | |
| 398-551, gnl|Hg17|chr22 (29055240-29055092) | |
| 398-551, gnl|Mm7|chr11 (4132035-4132182) | |
| 579-952, gnl|bosTau2|chr17 (42542730-42542375) | |
| 579-952, gnl|Hg17|chr22 (29055089-29054721) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-226, gnl|bosTau2|chr17 (42544933-42544775) | |
| 68-226, gnl|canFam2|chr26 (26517751-26517875) | |
| 68-226, gnl|danRer3|chr8 (33117611-33117484) | |
| 68-226, gnl|dasNov1|scaffold_5013 (51221-51346) | |
| 68-226, gnl|echTel1|scaffold_236764 (1228-1348) | |
| 68-226, gnl|fr1|chrUn (48523417-48523293) | |
| 68-226, gnl|galGal2|chr15 (10717681-10717562) | |
| 68-226, gnl|hg17|chr22 (29057564-29057688) | |
| 68-226, gnl|Hg17|chr22 (29057726-29057568) | |
| 68-226, gnl|loxAfr1|scaffold_42930 (929-1043) | |
| 68-226, gnl|mm7|chr11 (4130235-4130111) | |
| 68-226, gnl|Mm7|chr11 (4130071-4130229) | |
| 68-226, gnl|monDom2|scaffold_89 (4645826-4645950) | |
| 68-226, gnl|oryCun1|scaffold_130691 (806-922) | |
| 68-226, gnl|panTro1|chr23 (29152440-29152564) | |
| 68-226, gnl|rheMac2|chr10 (74189670-74189794) | |
| 68-226, gnl|rn3|chr14 (84821628-84821504) | |
| 68-226, gnl|tetNig1|chrUn_random (34370514-34370390) | |
| 68-226, gnl|xenTro1|scaffold_207 (925505-925629) | |
| 398-551, gnl|bosTau2|chr17 (42542881-42542732) | |
| 398-551, gnl|Hg17|chr22 (29055240-29055092) | |
| 398-551, gnl|Mm7|chr11 (4132035-4132182) | |
| 579-952, gnl|bosTau2|chr17 (42542730-42542375) | |
| 579-952, gnl|Hg17|chr22 (29055089-29054721) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| elu (0.385356) | |
| eye (0.341006) | |
| cag (0.302389) | |
| cly (0.241284) | |
| ece (0.229305) | |
| eje (0.197668) | |
| col (0.195008) | |
| fty (0.17584) | |
| sin (0.174948) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ova (0.129132) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| eye (0.341006) | |
| cag (0.302389) | |
| cly (0.241284) | |
| ece (0.229305) | |
| eje (0.197668) | |
| col (0.195008) | |
| fty (0.17584) | |
| sin (0.174948) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ova (0.129132) | |
| pgl (0.118483) | |
| nbm (0.0993246) |